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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5f0nA_

Fold library idPDB HeaderMoleculeTitle
c5f0nA_3.20PDB header: cell cycleChain: A: PDB Molecule: cohesin subunit pds5,cohesin subunit pds5, cohesin subunit


Added to library: Sat Apr 23 08:27:15 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XXXXXXXXXXXXXXXXXDLRSLERYRADLIDRKILRNKDHGVRAFAACCLSDILRLYAPDAPYTDKELTE
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Known secondary structure (DSSP)


TTTTT
T
SSTTT
SS

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence IFRLFLAQLKLLQEPENGYLTQQTYLINNLLEYRSIVILTDLPSSSQLVEELFNIFYSPTNSTIQGNMFT
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Known secondary structure (DSSP) GGGG
TTSS
T
TTTSS

STTTSTTGGG

STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence AIGGILGEVISECDSLPMSALKMVFNKFLSHKRAESLDGINYKKDPGFEISLIICQTYSNRLGRHFIKFY
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Known secondary structure (DSSP) TT
SS

TTSGGGSS

TT


TTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence SEIMYEVLGESSAYKTLVKIGNLTSELWKYAPELVGSVTGLLYQLLCSDNELFRESATKCVSKMLGTHSL
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Known secondary structure (DSSP) TTTT

TTT
GGGTT
SSTS

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence INFAVAHSDTYKIWLSKMADISPHVRQAWVSEIPSILMSRSDLSDDISKGLAKALIDSDHTVRLSAIQTF
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Known secondary structure (DSSP) S
TGGGS
S
TT
SS
T
SSGGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence HEVPVKRLWECLPNAAVFAGLVHLTRETRRDLRDECIDAVARIYTESIESIPKTNENKEIWGVVETIPSA
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Known secondary structure (DSSP) TSS



TTTT

SS



STTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence CFNLYYINDLEINMKVDLLTFEKFLPLGLSNEEFVQRLLTLLQGFNEKAFSSFYAFNRRQDQMSTVLWKF
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Known secondary structure (DSSP) GGGGS

TTS
TTS
TT

 .........500.........510.........520.........530.........540.........550.........560
Sequence IEFCEETNSQSPAASLSDTKLIKTVEWISSGFPSHLNVEQILLAFRELNDRRLYRLIKVAVAETSKHLTV
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Known secondary structure (DSSP) S
SSGGGTTSSTTS
GGG
S


TT

 .........570.........580.........590.........600.........610.........620.........630
Sequence RNAVSELFKRLEEPELFRKKNIKIESRFTRDNFSTVFRVLIYRAAPIIFNISNLPSFLNTSNEDEKALKR
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Known secondary structure (DSSP)
TTS



SSS

TTS
STT
GGG



 .........640.........650.........660.........670.........680.........690.........700
Sequence QLIDNISIIKPGIFKDQVKNLVTIITTLSLAEAMRTVYKISKTFFFQKLEDYAKEGNPLEAKYAIKLLGL
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Known secondary structure (DSSP)

GGGGGTT






TTS
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence APNAAEYLSEVATAILPLDLKSKHFASNVLVLAEITKMQPQLLEKDSTEIVGLLIKDVLLSNDVVGDEDD
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Known secondary structure (DSSP) SSS
S

TTSTT
GGGSTTTTTS

SS
S

TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence QQAWFSDEDIYTGKADALSAKVFSLKLFANKIKVMAPDAHADEMTHAFTERTLKLFFYLVASGGELVSES
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Known secondary structure (DSSP)

S


TTSSTTT
SSSSTS

S
TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence NTDNYPTPANYQNKLRCCAGLHILKITKIASLSRFIKPQDISKLMNLVEDESLEVRSSFIGRLKDFLGDG
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Known secondary structure (DSSP)
GGG



T
GGGTTTS
TT
SSTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence SISIKFLPLVFFTAYEPDQALRTSTKMWINYTLSKENFRKGTFFERALPRLIHFIAHHPDVAEGLRLFLT
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Known secondary structure (DSSP)
S
GGGGGGGGGGTT
S
STTT
TTTT

 .........990.........1000.........1010.........1020.........1030........
Sequence GLTTAIDYLVFYADSVLKASNLALLYYLAGRVRQYXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TTTS
STTGGG





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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