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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5aooB_

Fold library idPDB HeaderMoleculeTitle
c5aooB_UNKPDB header: virusChain: B: PDB Molecule: vp1;


Added to library: Sat Mar 12 09:39:42 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NVTTDVGANGWAPTVSTGLGDGPVSASADSLPGRSGGASSEKTKVGSRFSKWWEPAPSSTANPQPSLIAL
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Known secondary structure (DSSP)

SS



SS

TTTB
SS
B










S
SSTTT





SS

SS



S
SSS



SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence NPSATQSGNASILTGSTAPSLLAYPTATPVPLPNPDEPSQPGPSGDRTWLLDTVTWSQEFTRGWNIAGSN
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Known secondary structure (DSSP)

TTSS


SS





S

S

B

GGGTSS
TT

TT


TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GMQWTGLESLIFPVSTDTNWTSTSSPTAYPLPFSFVRAYPDSSWAAMYNTHSMWNCGWRVQVTVNGSQFH
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Known secondary structure (DSSP)
B

SS
S


SSTTS

SS


BT
TTSTT



TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence AGALILYMVPEATTHAIQTARDNAGFVFPYVILNLYESNTATIEVPYISPTPNTSSGLHAPWTFYLQVLS
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Known secondary structure (DSSP) S

SGGGGGSSTTT
S



SSSSTTT

S
 .........290.........300.........310....
Sequence PLNPPPSLPTSLSCSIYVTPVDSSFHGLRYLAPQ
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Known secondary structure (DSSP)

TTS
S
S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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