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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5a9qY_

Fold library idPDB HeaderMoleculeTitle
c5a9qY_PDB header: transport proteinChain: Y: PDB Molecule: nucleoporin seh1;PDBTitle: human nuclear pore complex


Added to library: Sat Oct 3 10:35:08 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEF
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Known secondary structure (DSSP)
B



B

BB
B
T

BB

TTB

BBSS
B
GGGS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVR
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Known secondary structure (DSSP) SS

SSS


SS
TTTTS



SSBTBTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence IYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYA
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Known secondary structure (DSSP)


STT


TTTBT

SBSB

BBTTTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence KAETLMTVTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQ
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Known secondary structure (DSSP)
BTB





BB
BTB

SBBBTTTTT
BBBBBBTTBT
S


TTSBTTS
SB
 .........290.........300.........310.........320..
Sequence VWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGN
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Known secondary structure (DSSP) BBSB
S
BTBB
SGGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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