Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5a1vV_

Fold library idPDB HeaderMoleculeTitle
c5a1vV_PDB header: transport proteinChain: V: PDB Molecule: coatomer subunit gamma-1;PDBTitle: the structure of the copi coat linkage i


Added to library: Sat Jul 11 08:25:06 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYL
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)


GGGGGSS


S



GGGS

 .........80.........90.........100.........110.........120.........130.........140
Sequence TIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPAVRALCQITDSTMLQAVERYMKQAIVDKVPSVSSSAL
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TS
S
GGGSSS

T
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYC
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP)
TT

S
SSSS

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence MMIRVASKQLEEEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPK
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TS



TTS

SS


TTBTTB
SS

TTS
SS

BTTB
SSSTT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence AALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDSNRSIATLAITTLLKTGSESSIDRLMKQISSFMSE
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) STT

SS
SS
TTT




TTTTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence ISDEFKVVVVQAISALCQKYPRKHAVLMNFLFTMLREEGGFEYKRAIVDCIISIIEENSESKETGLSHLC
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) S
STTS
SSSSTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence EFIEDCEFTVLATRILHLLGQEGPKTNNPSKYIRFIYNRVVLEHEEVRAGAVSALAKFGAQNEEMLPSIL
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TS
SSSS


SSS
TS

GGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence VLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLEKALQQYTLEPSQPEKVAATRQ
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) STTTSSSSTS
S
SS


S







-



S
SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence EIFQEQLAAVPEFQGLGPLFKSSPEPVALTESETEYVIRCTKHTFSDHLVFQFDCTNTLNDQTLENVTVQ
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) SSSS

SS

TTSSSS

SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence MEPTEAYEVLSYVPARSLPYNQPGTCYTLVALPTEDPTAVACTFSCVMKFTVKDCDPNTGEIDEEGYEDE
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) SSS


BT



SS
SS
S


SSS



SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence YVLEDLEVTVADHIQKVMKVNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVP
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)






S
TTS
TT

ST
TTSTTS

 .........780.........790.........800.........810.........820....
Sequence ENKNTHTLLLAGVFRGGHDILVRSRLLLLDTVTMQVTARSSEELPVDIILASVG
Predicted secondary structure














SS confidence





















































Known secondary structure (DSSP) TT
STTTSSSSS
-


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D