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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4wsbB_

Fold library idPDB HeaderMoleculeTitle
c4wsbB_PDB header: transferase/rnaChain: B: PDB Molecule: rna-directed rna polymerase catalytic subunit;PDBTitle: bat influenza a polymerase with bound vrna promoter


Added to library: Sat Nov 22 08:17:50 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDVNPMLIFLKVPVQNAISTTFPYTGDPPYSHGTGTGYTMDTVIRTHDYSSRGIWKTNSETGAQQLNPID
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Known secondary structure (DSSP)



GGGGGGTS
TGGGGGGG

TTS





S
SSTTS
TTT


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence GPLPEDNEPSGYAQTDCVLELIEGLDRSHPGLFETACQETIDAIQQTRVDKLTQGRQTYDWTLNRNQPAA
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Known secondary structure (DSSP)




SSS





STT

GGGGSSSS
TTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TALANTIEVFRKNGYKLNESGRLIDFLKDVLLSFENDSMEVTTHFQKKKRIRDNMITQRTIGKKRVKLTK
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Known secondary structure (DSSP) TT

SGGGS
TTT
SS




 .........220.........230.........240.........250.........260.........270.........280
Sequence KNYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVELLARNICERLEQSGLPVGGNEKKAKLAN
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Known secondary structure (DSSP) T

S

S
SS


BTT
TTB

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VIKKMMAKSTDEELSYTITGDNTKWNENQNPRIFLAMVLRITAGQPEWFRDLLAVAPIMFSNKVARLGRG
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Known secondary structure (DSSP) S
TT
BTTTTTT

TTS
T



S
 .........360.........370.........380.........390.........400.........410.........420
Sequence YMFESKSMHLRTQISAENLSDINLRYFNEDTKKKIEKIRHLMVEGTASLSPGMMMGMFNMLSTVLGVSVL
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Known secondary structure (DSSP) TTTT
GGGGSS

TTSS
TTTT

SS

TTS

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence NLGQREILKRTYWWDGLQSSDDFALIINGHFKEDIQQGVNHFYRTCKLVGINMSQKKSYINKTGTFFTSF
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Known secondary structure (DSSP) TT

SSTTSSTTT

B
TTT
TTB

TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence FYRYGFVANFSMELPSFGVAGNNESADMSIGTTVIKTNMINNDLGPATAQMAIQLFIKDYRYTYRCHRGD
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Known secondary structure (DSSP)
BBSSB



GGGGGGSS

SS
S


T


TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence TNLETRRTKSIKRLWTETISKAGLLVADGGPNPYNLRNLHIPEVCLKWSLMDPDYRGRLCNPNNPFVHHM
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Known secondary structure (DSSP)




SS
S
GGGS
GGGT





GGGTTS
TGGGS
T
TT
SSS


 .........640.........650.........660.........670.........680.........690.........700
Sequence EVESTNLAVVMPGPAKSLEYDAVATTHSWTPKRNRSILNTNQRGILEDERIYQKCCQVFEKFFPSSTYRR
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Known secondary structure (DSSP)
TTTTT










TT







GGGTSGGG
GGGGTS
 .........710.........720.........730.........740.....
Sequence PIGMASMLDAMLSRARIDARIDLESGSSQDFSEITNTCKAIEALK
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Known secondary structure (DSSP)



S
T




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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