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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4v1oW_

Fold library idPDB HeaderMoleculeTitle
c4v1oW_PDB header: transcriptionChain: W: PDB Molecule: mediator of rna polymerase ii transcription subunit 11;PDBTitle: architecture of the rna polymerase ii-mediator core2 transcription initiation complex


Added to library: Sat Feb 7 08:41:55 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QFVKRRRDMLEHINLAMNESSLALEFVSLLLSSVKESTGMSSMSPFLRKVVKPSSLNSDKIPYVAPTKKE
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Known secondary structure (DSSP)
TSS
SSGGGGS
S
SS






SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence YIELDILNKGWKLQSLNESKDLLRASFNKLSSILQNEHDYWNKIMQSISNKDVIFKKLLAIKYGDRGIAN
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Known secondary structure (DSSP)

TTSS

SSS







 .........150.........160.........170.........180.........190.........200.........210
Sequence INLDLIPHHSVKKFLRVRIFTKIESEDDYILSGESVMDRDIRKQIQLLKKIIFEKELMYQIKKECALLIS
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Known secondary structure (DSSP)






S


TT
S






TGGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence YGVSIENENKVIIELPNEKFEIELLSLDDDLPKINDKRANLMLVMLRLLLVVIFKKTLRSRISSPHGLIN
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Known secondary structure (DSSP) GTTT
SS
SS




TTTTTSS


 .........290.........300.........310.........320.........330.........340.........350
Sequence LNVDDDILIIRPILGKVRFANYKLLLKKIIKDYVLDIVPGSSITETEVENITKLNKEIRAFDKLLNIPRR
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Known secondary structure (DSSP)



STTTTSTT




TTS

 .........360.........370.........380.........390.........400.........410.........
Sequence ELKINLPLTEHKSPNLSLMLESPNYCNALIHIKFSAGTEANAVSFDTTFSDFKEVEDFLHFIVAEYIQQ
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Known secondary structure (DSSP)



SS



TTSSS



TTT


S
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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