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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4uweA_

Fold library idPDB HeaderMoleculeTitle
c4uweA_PDB header: signaling proteinChain: A: PDB Molecule: ryanodine receptor 1;PDBTitle: structure of the ryanodine receptor at resolution of 8.5 a2 in partially open state


Added to library: Sat Dec 13 11:44:24 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DEVQFLRTDDEVVLQCSATVLKEQLKLCLAAEGFGNRLCFLEPTSNAQNVPPDLAICCFTLEQSLSVRAL
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)





BTT
TT


SS

B

TTTTTS



TTT

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence QEMLANTVEAGVESSQGGGHRTLLYGHAILLRHAHSRMYLSCLTTSRSMKLAFDVGLQEDATGEACWWTM
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) T
S





TT
B
BTT
TTT


S







SS

SSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence HPASKQRSEGEKVRVGDDLILVSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSCCEEGYVTGGHVL
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SS confidence





































































Known secondary structure (DSSP) SSTT

TTSB

TT
TTT

TTSS








TTB
BTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence RLFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHARSLWRLEPLRISWSGSHLRWGQPLRIRHVTTGRY
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SS confidence





































































Known secondary structure (DSSP) SSSS

TT
TTTT
BGGGGTSGGG
S
STTTTSB

TT

TTT

 .........290.........300.........310.........320.........330.........340.........350
Sequence LALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTAPKRDVEGMGPPEIKYGESLCFVQHVASGLWLTYA
Predicted secondary structure


























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Known secondary structure (DSSP) TTT
GGG


SSSS









SSS




BTTT

BTTT


 .........360.........370.........380.........390.........400.........410.........420
Sequence APDPKALRLGVLKKKAILHQEGHMDDALFLTRCQQEESQAARMIHSTAGLYNQFIKGLDSFSGKPRGSGP
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Known secondary structure (DSSP)



SSSS
SS

SS

GGG


TTS

S



 .........430.........440.........450.........460.........470.........480.........490
Sequence PAGPALPIEAVILSLQDLIGYFEPPSEELQHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTA
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Known secondary structure (DSSP)










SSS
SSTT
TTTTSSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence AHFAEYAGEEAAESWKEIVNLLYELLASLIRGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)
SSSSSS
T



TT



 .........570.........580.........590.........600.........610.........620.........630
Sequence XXXXXXXXXXXXXXXXXXXXXXFVGRAEGSTQYGKWYFEVMVDEVVPFLTAQATHLRVGWALTEGGVGDD
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Known secondary structure (DSSP) TT


S



SS


S

SSS



TT

TTSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence LYSYGFDGLHLWTGHVARPVTSPGQHLLAPEDVVSCCLDLSVPSISFRINGCPVQGVFEAFNLDGLFFPV
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Known secondary structure (DSSP) TT
TTT
TTTT





TT
TTTTTTS


SS


 .........710.........720.........730.........740.........750.........760.........770
Sequence VSFSAGVKVRFLLGGRHGFVPCPVDTVQIVLPPHLERIREKLAENIHELWALTRIEQGWTYGPVRDDNKR
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Known secondary structure (DSSP)
SS

SSS









TT



GGGT
B

SS
BTTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence LHPCLVNFHSLPEPERNYNLQMSGETLKTLLALGCHVGMADEKAEDNLKKTKLPKTYMMSNGYKPAPLDL
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Known secondary structure (DSSP) B



SSGGGS
TT



SSTT

TT

SS
STTS
GGGGGS
 .........850.........860.........870.........880.........890.........900.........910
Sequence SHVRLTPAQTTLVDRLAENGHNVWARDRVAQGWSYSARRNPRLVPYRLLDEATKRSNRDSLCQAVRTLLG
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Known secondary structure (DSSP) TT



T




SS
S
GGGS
 .........920.........930.........940.........950.........960.........970.........980
Sequence YGYNIRIFRAEKSYTVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADELAYVFNGHRGQRWHLGSE
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Known secondary structure (DSSP) TT


S




SSS
SS

TT

TTS
TTSSTTTTTTSSS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PFGRPWQSGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFREIEIGDGFLPVCSLGPGQVGHLNLGQD
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Known secondary structure (DSSP) B
S



TT
TTTTTT


TTS


S


TT


STT

SSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VSNRDDPEIILNTTTYYYSVRVFAGQEPSCVWVGWVTPDYHQHDMNFDLSKVRAVTVTMGDNCYMVWGIS
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Known secondary structure (DSSP)





TTSS
SSS








TT


SB
SS



STT

TTTSSS






 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence HTDLVIGCLVDLATGLMTFTANGKESNTFFQVEPNTKLFPAVFVLPTHQNVIQFELGKQKNXXXXXXXXX
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Known secondary structure (DSSP)


S
TTTTTT


TT


B





TTTT












 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)





S
S

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP) T





 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)







 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)




 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)






 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)





 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)





 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)







 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFDPRPVETLNVIIPEKLDSFINKFAEYT
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Known secondary structure (DSSP)











TT



GGG
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence HEKWAFDKIQNNWSYGENVDEELKTHPMLRPYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEYN
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SS confidence





































































Known secondary structure (DSSP) TT
B

SS
BTTTTB
TT
S
GGG

TT

S




 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence PQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPLLVPYDTLTAKEKARDREKAQEL
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SS confidence





































































Known secondary structure (DSSP)





TT



TT



TT
S
GGGS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence LKFLQMNGYAVTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TT





 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP) TT







 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP) T





 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)




TTT



 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)





 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)







 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)



 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)








 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)







 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)







 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)









 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)



TT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)






S


GG
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP) G


S

S
TTTS






 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP) T



B



 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)

 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)



TT



TT
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)

TT





 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP) SS



S






 .........3300.........3310.........3320..
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure































SS confidence































Known secondary structure (DSSP)


-


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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