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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4rdtA_

Fold library idPDB HeaderMoleculeTitle
c4rdtA_PDB header: membrane proteinChain: A: PDB Molecule: znud;PDBTitle: structure of the bacterial zn-transporter znud from neisseria2 meningitidis (flexible conformation bound to a zinc ion)


Added to library: Sat Aug 22 12:48:26 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PRATSGLLHTSTASDKIISGDTLRQKAVNLGDALDGVPGIHASQYGGGASAPVIRGQTGRRIKVLNHHGE
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Known secondary structure (DSSP)



S
SS



TT
TTS
SSTTSTTTTTTTB
GGGSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence TGDMADFSPDHAIMVDTALSQQVEILRGPVTLLYSSGNVAGLVDVADGKIPEKMPENGVSGELGLRLSSG
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TTT
TTS

S

GGG
SGGGGGT
SS

S
SSS
SS

GGGTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NLEKLTSGGINIGLGKNFVLHTEGLYRKSGDYAVPRYRNLKRLPDSHADSQTGSIGLSWVGEKGFIGVAY
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Known secondary structure (DSSP) TT
SSS
S
SSSTT
STT



SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence SDRRDQYGLPAHDCHADIIWQKSLTEEDIDYDNPGLSCGFGRPWIDLRNKRYELRAEWKQPFPGFEALRV
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Known secondary structure (DSSP)
S




SSSSSS





STTTSSTTSTTT




S

STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence HLNRNDYRHDEKAGDAVENFFNNQTQNARIELRHQPIGRLKGSWGVQYLQQKSSALSAISEAVKQPMLLD
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Known secondary structure (DSSP) TT

SSSSS
TTTS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence NKVQHYSFFGVEQANWDNFTLEGGVRVEKQKASIRQTARSFALSGNWYFTPQHKLSLTASHQERLPSTQE
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Known secondary structure (DSSP)
SS


SSSS


 .........430.........440.........450.........460.........470.........480.........490
Sequence LYAHGKHVATNTFEVGNKHLNKERSNNIELALGYEGDRWQYNLALYRNRFGNYIYAQTLNDSEMKLVRYN
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Known secondary structure (DSSP)
TTTT

S



TT





 .........500.........510.........520.........530.........540.........550.........560
Sequence QSGADFYGAEGEIYFKPTPRYRIGVSGDYVRGRLKNLPDDQNAPRVPAARLGFHLKASLTDRIDANLDYY
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Known secondary structure (DSSP)
SSSSS




B
TT



SSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence RVFAQNKLARYETRTPGHHMLNLGANYRRNTRYGEWNWYVKADNLLNQSVYAHSSFLSDTPQMGRSFTGG
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Known secondary structure (DSSP)

B
S

TT


B



B
SS

TT





TTSS
TTS



S
 .....
Sequence VNVKF
Predicted secondary structure
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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