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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4pkdB_

Fold library idPDB HeaderMoleculeTitle
c4pkdB_PDB header: gene regulationChain: B: PDB Molecule: u1 small nuclear ribonucleoprotein a,u1 small nuclearPDBTitle: u1-70k in complex with u1 snrna stem-loops 1 and u1-a rrm in complex2 with stem-loop 2


Added to library: Sat Jan 3 09:31:20 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF
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Known secondary structure (DSSP)



SS

SSS
TTS


STTTTT
SSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence PFYDKPMRIQYAKTDSDIIAKMKGTFVEETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAF
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Known secondary structure (DSSP) B
SSSB

SS

T





TT

GGG
TT

S
GG
 .........150.........160.........170.........180.........190.........200.........210
Sequence KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR
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Known secondary structure (DSSP) GS

TT

TTS

TTT

SS
TT
TT
 .........220.........230.........240
Sequence RVLVDVERGRTVKGWRPRRLGGGLGGTRRG
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Known secondary structure (DSSP)


TTTSTT


GGGT




TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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