Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4mijA_

Fold library idPDB HeaderMoleculeTitle
c4mijA_PDB header: transport proteinChain: A: PDB Molecule: trap dicarboxylate transporter, dctp subunit;PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 polaromonas sp. js666 (bpro_3107), target efi-510173, with bound3 alpha/beta d-galacturonate, space group p21


Added to library: Sat Sep 21 08:34:46 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TEFRSADTHNADDYPTVAAVKYMGELLEKKSGGKHKIKVFNKQALGSEKETIDQVKIGALDFTRVNVGPM
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)





TT
TTTS

TTTT

TTSSSSGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence NAICPLTQVPTMPFLFSSIAHMRKSLDGPVGDEILKSCESAGFIGLAFYDSGARSIYAKKPIRTVADAKG
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TTTSGGGSTT
SSSSGGGGT



SS


STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LKIRVQQSDLWVALVSAMGANATPMPYGEVYTGLKTGLIDAAENNIPSFDTAKHVEAVKVYSKTEHSMAP
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)

S
TTT


GGGTSSS
TT




 .........220.........230.........240.........250.........260.........270.........280
Sequence EILVMSKIIYDKLPKAEQDMIRAAAKESVAFERQKWDEQEAKSLANVKAAGAEIVEVDKKSFQAVMGPVY
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) S
TT



TT
 .........290.........300..
Sequence DKFMTTPDMKRLVKAVQDTKAE
Predicted secondary structure




SS confidence





















Known secondary structure (DSSP)

ST




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D