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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4m4dA_

Fold library idPDB HeaderMoleculeTitle
c4m4dA_PDB header: lipid binding proteinChain: A: PDB Molecule: lipopolysaccharide-binding protein;PDBTitle: crystal structure of lipopolysaccharide binding protein


Added to library: Sat Nov 2 08:31:17 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VNPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQNCELRGSSLKL
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Known secondary structure (DSSP)


STT




TTT


 .........80.........90.........100.........110.........120.........130.........140
Sequence LPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLGMDPSGRPTVSASGCSSRICD
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Known secondary structure (DSSP) TTT
TT




TTS



 .........150.........160.........170.........180.........190.........200.........210
Sequence LDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVTSDLQPYLQTLPVTAEIDNVLGIDYSLVAA
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Known secondary structure (DSSP) TT

TTTTS
S
SSS


BSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence PQAKAQVLDVMFKGEIFNRNHRSPVATPTPTMSLPEDSKQMVYFAISDYAFNIASYLNFSITDDMLPHDS
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Known secondary structure (DSSP)

SS


B

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SSS


SSS




GGGS
SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence GIRLNTKAFRPFTPQIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLG
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Known secondary structure (DSSP)



BTTTSTTT
TTS
S




BSSTT


TTSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VVTNVFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAELAQGFPLPL
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Known secondary structure (DSSP) TTSSS


T



 .........430.........440........
Sequence PRHIQLHDLDFQIRKDFLYLGANVQYMR
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Known secondary structure (DSSP)
TT
SSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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