Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4l9oA_

Fold library idPDB HeaderMoleculeTitle
c4l9oA_PDB header: protein transportChain: A: PDB Molecule: protein transport protein sec13, copii coat assemblyPDBTitle: crystal structure of the sec13-sec16 blade-inserted complex from2 pichia pastoris


Added to library: Sat Oct 5 09:33:43 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SHMTAPVVRNPRTQFPIFHWCRGGKALSMLPKFDTYGQSKVEINIVGSGSVTIGNAHDDLIHDAVLDYYG
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)



S










TT


TTS





S
SS

TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence RRLATCSSDKTIKIFEIQRLVETLIGHEGPVWQVAWAHPKFGVILASCSYDGKVLIWKEDNGVWNKVAEH
Predicted secondary structure































































SS confidence





































































Known secondary structure (DSSP) STTS



SS


GGG
TTS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence SVHQASVNSVSWAPHEYGPVLLCASSDGKISIVEFKDGGALEPIVIQGHAIGVNAASWAPISNTRRFVSG
Predicted secondary structure





























































SS confidence





































































Known secondary structure (DSSP)


SS


GGG
STTS
BTTB

S

SSS







 .........220.........230.........240.........250.........260.........270.........280
Sequence GCDNLVKIWRYDDAAKTFIEEEAFQGHSDWVRDVAWSPSRLSKSYIATASQDRTVLIWTKDGKSNKWEKQ
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP) TTS
TTTT


SS




SSSTTS

TT
S
 .........290.........300.........310.........320.........330
Sequence PLTKEKFPDVCWRASWSLSGNVLAISGGDNKVTLWKENIQGKWESAGEVD
Predicted secondary structure





















SS confidence

















































Known secondary structure (DSSP) S
SS

SS

SSS

TTS

TTS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D