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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4ifqA_

Fold library idPDB HeaderMoleculeTitle
c4ifqA_PDB header: protein transportChain: A: PDB Molecule: nucleoporin nup192;PDBTitle: crystal structure of saccharomyces cerevisiae nup192, residues 2 to2 960 [scnup192(2-960)]


Added to library: Sat Feb 23 08:24:13 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SLKWSAIPFQTLYRSIESGEFDFDLFKEVLPDLQNLNLNTDKLKNNASRSQLEKGEIELSDGSTFKVNQE
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Known secondary structure (DSSP)




STT


TTT


S
B

STTTS
SSS


 .........80.........90.........100.........110.........120.........130.........140
Sequence FIFEAISLSDELNLDEIVACELILSGDTTANNGKVQYFLRRQYILQIVSFIVNCFHEDTELYQELIKNGA
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Known secondary structure (DSSP) TTB
TTS

STT
S
SS
TS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LVSNILSAFKFIHTQLSEIKQQINKAQILENYNALFQQNIKFRRDFLLREYDILSQILYGLVDKGAIXKN
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Known secondary structure (DSSP) TT


S
TT
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence KDFILSLLHHVSELDSNDFFIIYYTPAFFHLFASLRVLPDADVKLLHSQFXKDLKDDSIYTKPVKVALIF
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Known secondary structure (DSSP) TS
TTBGGGGGGTTGGGS
TTSGGGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence IFFAYFIGWCKEDPKRRADTXDFKTDVDEPXTSAVELGAIEQILIFAADTSIVEQDKSXELFYDIRSLLE
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Known secondary structure (DSSP) TTSTTTTTTT

TTTTT

GGG
TT


SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence RHIPRLIPKQLLDSYTTIVLSDQTQEFFLSSFDDVLQTIITDCAFLLTKIKDAEEDSLLSGEDLTLDDIS
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Known secondary structure (DSSP)
SS


B
GGG



S




TS
SSS


 .........430.........440.........450.........460.........470.........480.........490
Sequence LKADLERFFLSIYFFYASRPEYSCTFWSDKESNAYGFIEWCSRCNDNLXRSCFYLXVSSLSFGPENALNV
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Known secondary structure (DSSP) TTTT
T
SSSTT

S

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence YHYFGENSSISWKNIAQCLSDYTKKISNFNSNEEAVIFLSSLLTLVGSVTYQVDEDVKSSLSKVFSDVLF
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Known secondary structure (DSSP) SSSSS
T

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence EFTKINTPLVGAAFKVISNLVPKLESSRTKFWSFLDSLIFKDSSLNYSSESYRNAFTNVLTKYSDVLGFL
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Known secondary structure (DSSP) TTS

TT

SSGGGGTT



SS

S
 .........640.........650.........660.........670.........680.........690.........700
Sequence QLFHNLISIHSRENNSEYXVFGKLAFPTRLGQGYRKVGIWPYFDYIFNDILAHVDQIVDIRNKRAVQLPI
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Known secondary structure (DSSP) T


SB
TTS
SB
TT

SS
TTTTTTTSSBSSTTGGGGGG
SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LKIIYTGLCSFDYSVILNNFFNYVQECPAIPIFNYIFTEKIYKSIFNVVDVGVDGGKNQAELLQLAVKII
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Known secondary structure (DSSP) SS
T


TTSS




TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence NKVLDYQETYVEELFPIVKKHGKTDYFLPKNYSLHGLRSFYDAIFFNIPLVAHLGLYVGVDDQILATNSL
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Known secondary structure (DSSP) T

TTB


TT




TT

SS
 .........850..
Sequence RILAKLSERSNG
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Known secondary structure (DSSP) TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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