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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4g1eA_

Fold library idPDB HeaderMoleculeTitle
c4g1eA_PDB header: protein bindingChain: A: PDB Molecule: integrin alpha-v;PDBTitle: crystal structure of integrin alpha v beta 3 with coil-coiled tag.


Added to library: Wed Jan 9 19:27:33 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FNLDVDSPAEYSGPEGSYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPI
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Known secondary structure (DSSP)

B

SS


TTS
TTS


SS


TT


SSTT
SS


SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EFDATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYA
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Known secondary structure (DSSP)
S





TTS
TT

TTSTTTT

TTSSS





TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence PCRSQDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLAT
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Known secondary structure (DSSP) TT
SS

TTTTTTT

TTS
TTSTTTBT

TT
SS


SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence RTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGEQMAAYFGFSV
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Known secondary structure (DSSP)



GGGTT

BTS

SSSS

TTT

TTT


SSTTS
TTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence AATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDL
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Known secondary structure (DSSP)
SSSSSS
TT

TTS




TTS


SSTTS
TTSSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence DQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYP
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Known secondary structure (DSSP) S
SSS
TT
SGGG


B
SSSB
SS
S




SSS



SS
SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence DLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRK
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Known secondary structure (DSSP) TTTT
B

SSTT


SB
TTSS
B


SS

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence LNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFME
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Known secondary structure (DSSP) STTS
TTS


TTT
SSBSS





GGG
S

SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence YRLDYRTAADTTGLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSVDSDQKKIYIDDNPLTLIVKA
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Known secondary structure (DSSP)
SSTT

SSS



SS

S
S

SS













 .........640.........650.........660.........670.........680.........690.........700
Sequence QNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVVCDLGNPMKAGTQLLAGLRFSV
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Known secondary structure (DSSP)
SS
BTT


SS

S
SSS





TT



SSB
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence HQQSEMDTSVKFDLQIQSSNLFDKVSPVVSHKVDLAVLAAVEIRGVSSPDHVFLPIPNWEHKENPETEED
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Known secondary structure (DSSP)


SSS
S
S
SSS
B






SSS
TT



SS

S
 .........780.........790.........800.........810.........820.........830.........840
Sequence VGPVVQHIYELRNNGPSSFSKAMLHLQWPYKYNNNTLLYILHYDIDGPMNCTSDMEINPLRIKISSLTEK
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Known secondary structure (DSSP)


SSS
BSSSS


SS
SS
SSTT








S
 .........850.........860.........870.........880.........890.........900.........910
Sequence NDTVAGDIHTLGCGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTETFMNKENQNHSYSLKSSASFNVIEF
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Known secondary structure (DSSP)
S






TTTS

B
TT
STT
SS


 .........920.........930.........940.........950.........960....
Sequence PYKNLPIEDITNSTLVTTNVTWGIQPAPCEKELQALEKENAQLEWELQALEKEL
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Known secondary structure (DSSP) S
SSS





S
S


T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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