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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4c0pD_

Fold library idPDB HeaderMoleculeTitle
c4c0pD_PDB header: transport proteinChain: D: PDB Molecule: transportin-3;PDBTitle: unliganded transportin 3


Added to library: Sat Jan 25 08:21:50 2014
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GAKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQDVESCYFAAQTMKMKIQ
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Known secondary structure (DSSP)





SSTSTT


 .........80.........90.........100.........110.........120.........130.........140
Sequence TSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPF
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Known secondary structure (DSSP)

TTS
TTTTS

SSSTTGGGSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEEKMLMKVFRCLGSWFNLGVLDSN
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Known secondary structure (DSSP) TT
TT



ST

TTTT
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence FMANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVARE
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Known secondary structure (DSSP) T

TTS

S
TTTTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence DLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTN
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Known secondary structure (DSSP)
TSTTSGGG
TSS
GGGS
 .........360.........370.........380.........390.........400.........410.........420
Sequence DEVIHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTL
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Known secondary structure (DSSP)
T


TT

S


SSSGGGT
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence KEPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFL
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Known secondary structure (DSSP)



TTT




SST

TTS
TTSSGGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence DPVLGYLMKGLAEKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSLDSFLLSPEAAVGLLKGTALVL
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Known secondary structure (DSSP) SGGGSTTGGGTTTGGGS


 .........570.........580.........590.........600.........610.........620.........630
Sequence ARLPLDKITECLSELCSVQVMALKKLDPTVFLDRLAVIFRHTNPIVHPCQKVIQEIWPVLSETLNKHRAD
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Known secondary structure (DSSP) TS









TTSTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence NRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDML
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Known secondary structure (DSSP) S
TTTTTTS

TSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence QALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANCSV
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Known secondary structure (DSSP) TSTT
TT
SSTTT


 .........780.........790.........800.........810.........820.........830.........840
Sequence MRFLRDLIHTGVANDHEEDFELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIMQVDR
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Known secondary structure (DSSP) GGGTS
TTSTTTTS
GGG
 .........850.........860.........870.........880.........890
Sequence PTFCRWLENSLKGLPKTVTHKQLTDFHKQVTSAEECKQVCWALRDFTRLF
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Known secondary structure (DSSP) T






ST
SSTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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