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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3wbdA_

Fold library idPDB HeaderMoleculeTitle
c3wbdA_PDB header: immune systemChain: A: PDB Molecule: single chain fv fragment of mab735;PDBTitle: crystal structure of anti-polysialic acid antibody single chain fv2 fragment (mab735) complexed with octasialic acid


Added to library: Sat Oct 19 09:10:36 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLYWYLQKPGQSPKPLIYRVSNRFSGVPDRFSG
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Known secondary structure (DSSP)




S


TT

SS

B
TTS
B

TTS
TTT
TT

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence SGSGTDFTLKISRVEAEDLGVYFCFQGTHVPYTFGGGTRLEGGSQIQLQQSGPELVRPGASVKISCKASG
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Known secondary structure (DSSP) TTSS

GGG

SSSS






TT




TT

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence YTFTDYYIHWVKQRPGEGLEWIGWIYPGSGNTKYNEKFKGKATLTVDTSSSTAYMQLSSLTSEDSAVYFC
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Known secondary structure (DSSP) S
GGGS
TTS
TTTT
TTTBTTGGGT
S

GGG
 .........220.........230.
Sequence ARGGKFAMDYWGQGTSVTVSS
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Known secondary structure (DSSP)
SS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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