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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3jb6A_

Fold library idPDB HeaderMoleculeTitle
c3jb6A_PDB header: transferase/viral proteinChain: A: PDB Molecule: rna-dependent rna polymerase;PDBTitle: in situ structures of the segmented genome and rna polymerase complex2 inside a dsrna virus


Added to library: Sat Oct 31 08:20:50 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TKLHNTIFSETRKFTRESFKEIEHLTARLANDRVARHDFLFNTSIVLISDYSGEDSNGNQLQATITIPNE
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Known secondary structure (DSSP)

GGGS
S

TT
S
TT



S
TTS




 .........80.........90.........100.........110.........120.........130.........140
Sequence IINPKEYDPSDYPLAEDESFFKQGHKYDYLVTFRAGSLTNTYEPKTKMYKLHAALDKLMHVKQRKSRFAD
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Known secondary structure (DSSP) S
B


GGGS
B
TT
SSB
SS
S
SS


BBTTT



S
TTSTTT


SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LWRELCAVIASLDVWYQTTNYPLRTYVKLLFHKGDEFPFYESPSQDRIIFNDKSVASILPTFVYTCCQVG
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Known secondary structure (DSSP) S
S


BTTB
STTTTS
TTSBSSGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence TAIMSGILTHVESIVAMNHFLHCAKDSYIDEKLKIKGIGRSWYQEALHNVCQATVPVWSQFNEVIGHRTK
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Known secondary structure (DSSP) TSS

SS
TTT

TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence STSEPHFVSSTFISLRAKRAELLYPEFNAYINRAIQLSKTQNDVANYYAACRAMTNDGTFLATLTELSLD
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Known secondary structure (DSSP)



TS
S

SS



B



TTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence AAVFPRIEQHLVTRPAVLMSNTRHESLKQKYTNGVGSIAQSYLSSFTDEIAKRVNGRHHDEAWLNFLTTS
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Known secondary structure (DSSP) S



SS




TTS

SSSGGGS

 .........430.........440.........450.........460.........470.........480.........490
Sequence RIVMQAVFAREYRTPERIFKSLKAPIKLVERQQSDRRQRAISGLDNDRLFLSFMPYTIGKQIYELNDNAA
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Known secondary structure (DSSP)
SSS






BTS





SSSGGGGGT
SSB
 .........500.........510.........520.........530.........540.........550.........560
Sequence QGKQAGNAFDIGEMLYWTSQRNVLLSSIDVAGMDASVTTNTKDIYNTFVLDVASKCTVPRFGPYYAKNME
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Known secondary structure (DSSP)
S


SSTTTTTTSSSSS
TT




STT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VFEAGNRQSQVRYVNAAWQACALEAANSQTSTSYESEIFGQVKNAEGTYPSGRADTSTHHTVLLQGLVRG
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Known secondary structure (DSSP) TT
SS

S




TTT

SS


S
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence NELKRASDGKNSCLATIKILGDDIMEIFQGSESDTYDHAVSNASILNESGFATTAELSQNSIVLLQQLVV
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Known secondary structure (DSSP) TT




SSS
TT




SS
SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence NGTFWGFADRISLWTREDTKDIGRLNLAMMELNALIDDLVFRVRRPEGLKMLGFFCGAICLRRFTLSVDN
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Known secondary structure (DSSP) TT


GGGS
SS

SS



S
TGGGSS
TT
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence KLYDSTYNNLSKYMTLTKYDKNPDSDSTLMSLILPLAWLFMPRGGEYPAYPFERRDGTFTEDESMFTARG
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Known secondary structure (DSSP) TTTTTS



TTSS

GGGGB
SSS
B





B
TTS
B




TT

BG
 .........850.........860.........870.........880.........890.........900.........910
Sequence AYKRRLLYDVSNIGEMIQQNSMALDDDLLHEYGFTGALLLIDLNILDLIDEVKKEDISPVKVSELATSLE
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Known secondary structure (DSSP) GGGGTT
TT




TTTT
S



T





S
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence QLGKLGEREKSRRAASDLKIRGHALSNDIVYGYGLQEKIQKSAMATKETTVQSKRVSSRLHDVIVAKTRD
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Known secondary structure (DSSP)

TT



TTTSTTTT

S







 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence YKISTIPADALHLHEFEVEDVTVDLLPHAKHTSYSSLAYNMSFGSDGWFAFALLGGLDRSANLLRLDVAS
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Known secondary structure (DSSP)





GGGGGG




TTSSS
SSSS

TTSS



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IRGNYHKFSYDDPVFKQGYKIYKSDATLLNDFFTAISAGPKEQGILLRAFAYYSLYGNVEYHYVLSPRQL
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Known secondary structure (DSSP) SS




TTS
GGGTT

TT
S




B

TTTS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FFLSDNPVSAERLVRIPPKYYVSTQCRALYNIFSYLHILRSIANNRGKRLKMVLHPGLIAYVRGTSQGAI
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Known secondary structure (DSSP) SSS
S
GGGGGGG

T



GGG

S
TTS
 ......
Sequence LPEADN
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Known secondary structure (DSSP)
SSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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