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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3j4aJ_

Fold library idPDB HeaderMoleculeTitle
c3j4aJ_PDB header: viral proteinChain: J: PDB Molecule: head-to-tail joining protein;PDBTitle: structure of gp8 connector protein


Added to library: Sat Aug 10 08:30:23 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MAEKRTGLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQAVGARGLNNLA
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Known secondary structure (DSSP)

SSS
GGG

STS
S

S


SSS
S



S
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence SKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVA
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Known secondary structure (DSSP) TTSSSS








SS

SSSS

SSS
STTSS
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence GNVLLYLPEPEGSNYNPMKLYRLSSYVVQRDAFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADET
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Known secondary structure (DSSP) S
B






SSS







BTTTB


S

TT





B





STT

SSS




SSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence IDVYTHIYLDEDSGEYLRYEEVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLE
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SSSS





SS

SS
SSSSS
S






SSS


T
 .........290.........300.........310.........320.........330.........340.........350
Sequence NLQEAIVKMSMISSKVIGLVNPAGITQPRRLTKAQTGDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEA
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STTT
S
SSS



SS
SSS


T






 .........360.........370.........380.........390.........400.........410.........420
Sequence RLSFAFMLNSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKE
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Known secondary structure (DSSP)




SSS

ST



STS

TTSS


S

 .........430.........440.........450.........460.........470.........480.........490
Sequence AVEPTISTGLEAIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQ
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Known secondary structure (DSSP)










SS





S

SBTTTSS
B



SS
 .......
Sequence KMAQQSM
Predicted secondary structure

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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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