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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3iz3C_

Fold library idPDB HeaderMoleculeTitle
c3iz3C_PDB header: virusChain: C: PDB Molecule: structural protein vp1;PDBTitle: cryoem structure of cytoplasmic polyhedrosis virus


Added to library: Thu Jan 10 00:07:46 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AKIATASSARQTDVEKPADVTFTIENVDDVGIMQQKKPPTVVQSRTDVFNEQFANEALHPMTKVIFNGLD
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Known secondary structure (DSSP)

S







B







SSSS


S









SS









SS


SSSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence VNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDF
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Known secondary structure (DSSP)








SSS


STT


S





STTSTTTTSS
SSB


TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVV
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Known secondary structure (DSSP) S
GGGT
B
SSSS
B
S
SS

SSS


SS
TTTTTTT

B

S
B


GGGS
 .........220.........230.........240.........250.........260.........270.........280
Sequence NNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHALNIDH
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Known secondary structure (DSSP) TTS
B
SS



TTTTTT



TTTTSSS





SS
S
BSSSB
B

SB
 .........290.........300.........310.........320.........330.........340.........350
Sequence FAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAANYPRL
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Known secondary structure (DSSP) SS

BTTSSSTT

S
TT
B

S



SSSTTTTTS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence EGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNV
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Known secondary structure (DSSP) TT

B

SS

SS
SSS
S
TTTTT




TTTS

SB
 .........430.........440.........450.........460.........470.........480.........490
Sequence HELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFIQRGATYTINA
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Known secondary structure (DSSP)

B







SGGG
STTSSTTTTTTTTS
STTT
S


S
 .........500.........510.........520.........530.........540.........550.........560
Sequence AGEFEFSGRNEKWDQSLYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQ
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Known secondary structure (DSSP) SSS


BSS




STTSSSS
GGG




SS
GGG


S

B


TTTTTT


SSSS

 .........570.........580.........590.........600.........610.........620.........630
Sequence TYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHL
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Known secondary structure (DSSP) B


S



SSS

TT


SSSTTTTTTTTTGGGTSSTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence SVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTY
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Known secondary structure (DSSP) TS
SS

S



S
TTS




TTTSSB



BSSTTSSB
S
TTSGGGSS
B
 .........710.........720.........730.........740.........750.........760.........770
Sequence PLVEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYL
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Known secondary structure (DSSP)








TSTT

S


B

STT

SS
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence SHIRERLHITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGSASTYLRENEVLVVMPDYYDVV
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Known secondary structure (DSSP) TTTTTTTTT




B

SS

TTT
S


SS


TT
S

S
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence SRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTD
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Known secondary structure (DSSP)


SSS
TTSS



B

TTTT


TTS

S
TTTS



TTS


SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence YGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELRLRRLSVGLRLITNPR
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Known secondary structure (DSSP) SS
B
BTTT

B





SS


TTT



TTSS
STTS


SS
T
TT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IARRFDGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPH
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Known secondary structure (DSSP) T










SSS






SS




SSS
TT


TTT




SSS
S

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VHMTINERAGMSKLVADNIIASVIKSNWVVDIHDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQF
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Known secondary structure (DSSP)


S

STT
TTS

BB



TTT

S



TTGGGT

TT

B


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence MDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDL
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Known secondary structure (DSSP)

SS




SSS



S





SS
S



S



BTTTB

TT




TTTT



B
SSSSB
 .........1200.........1210.........1220.........1230.........1240....
Sequence LYSPVAVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA
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Known secondary structure (DSSP)









SSSS



B



BBS

SS
SS






STT




-


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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