PD2 ca2main

A server for reconstructing the backbone of Calpha proteins using Gaussian mixture models. Please upload a single chain in PDB format.


Upload PDB file with missing (total or partial) backbone atoms:
 

Options

Perform energy minimisation
Add sidechains to final model
 
Please cite: PD2 ca2main: High quality protein backbone reconstruction from alpha carbons using Gaussian mixture models. Benjamin L. Moore, James W. Murray and James T. MacDonald, Journal of Computational Chemistry https://doi.org/10.1002/jcc.23330
Structural alphabet in PDB format
Download source code

Contact

Web Server issues: Lawrence Kelley or Harry Powell

Algorithm: James MacDonald