Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ20646
DateFri May 3 21:47:31 BST 2013
Unique Job ID769c1e9df65d5170

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.485 Y:45.799 Z:45.753
Model (left) based on template d1t4wa_
Top template information
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:p53 DNA-binding domain-like
Confidence and coverage
Confidence:100.0% Coverage: 30%
196 residues ( 30% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
313 residues ( 49%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MEPDDSQLSDILKDARIPDSQDIGVNLTQNLSFDTVQKMIDGVFTPIFSQGTEDSLEKDI
Secondary structure 
SS confidence 
Disorder  ?????
???????
???
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LKTPGISTIYNGILGNGEETKKRTPKISDAFEPDLNTSGDVFDSDKSEDGLMNDESYLSN
Secondary structure 
SS confidence 
Disorder 
??????
???????????????
?
??
????????
????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  TTLSQVVLDSQKYEYLRVRTEEEQQLVIEKRARERFIRKSMKIAEETALSYENDGSRELS
Secondary structure 
SS confidence 
Disorder 
?
????
????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  ETMTQKVTQMDFTETNVPFDGNDESSNLAVRVQSDMNLNEDCEKWMEIDVLKQKVAKSSD
Secondary structure 
SS confidence 
Disorder 
?
????????
?
?
????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  MAFAISSEHEKYLWTKMGCLVPIQVKWKLDKRHFNSNLSLRIRFVKYDKKENVEYAIRNP
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  RSDVMKCRSHTEREQHFPFDSFFYIRNSEHEFSYSAEKGSTFTLIMYPGAVQANFDIIFM
Secondary structure 
SS confidence 
Disorder 
?????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  CQEKCLDLDDRRKTMCLAVFLDDENGNEILHAYIKQVRIVAYPRRDWKNFCEREDAKQKD
Secondary structure 
SS confidence 
Disorder 
?
?????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  FRFPELPAYKKASLESINIKQEVNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNEC
Secondary structure 
SS confidence 
Disorder 
???????
??????????
???????????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  DSPNNDYTMMHRTPPVTGYASRLHGCVPPIETEHENCQSPSMKRSRCTNYSFRTLTLSTA
Secondary structure 
SS confidence 
Disorder 
??
??????????
?
?????????????????
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  EYTKVVEFLAREAKVPRYTWVPTQVVSHILPTEGLERFLTAIKAGHDSVLFNANGIYTMG
Secondary structure 
SS confidence 
Disorder 
?
??
?
Disorder confidence 
 
   .........610.........620.........630.........640....
Sequence  DMIREFEKHNDIFERIGIDSSKLSKYYEAFLSFYRIQEAMKLPK
Secondary structure 
SS confidence 
Disorder 
?
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 27%)
Alpha helix ( 54%)
Beta strand ( 11%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1t4w chain A

3D model

Region: 223 - 418
Aligned: 196
Modelled: 196
Confidence: 100.0%
Identity: 100%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: p53-like transcription factors
Family: p53 DNA-binding domain-like

Phyre2

PDB 2rp5 chain A

3D model

Region: 528 - 644
Aligned: 117
Modelled: 117
Confidence: 100.0%
Identity: 100%
PDB header:transcription
Chain: A: PDB Molecule:putative uncharacterized protein cep-1;
PDBTitle: solution structure of the oligomerization domain in cep-1

Phyre2

PDB 2j1x chain A

3D model

Region: 227 - 409
Aligned: 167
Modelled: 183
Confidence: 99.8%
Identity: 20%
PDB header:nuclear protein
Chain: A: PDB Molecule:cellular tumor antigen p53;
PDBTitle: human p53 core domain mutant m133l-v203a-y220c-n239y-n268d

Phyre2

PDB 2ac0 chain A domain 1

3D model

Region: 227 - 409
Aligned: 167
Modelled: 183
Confidence: 99.8%
Identity: 22%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: p53-like transcription factors
Family: p53 DNA-binding domain-like

Phyre2

PDB 2xip chain A

3D model

Region: 227 - 420
Aligned: 173
Modelled: 194
Confidence: 99.8%
Identity: 23%
PDB header:cell cycle
Chain: A: PDB Molecule:tumour protein p73;
PDBTitle: crystal structure of the dna binding domain of human tp732 refined at 1.8 a resolution

Phyre2

PDB 1hu8 chain A

3D model

Region: 227 - 409
Aligned: 167
Modelled: 183
Confidence: 99.8%
Identity: 23%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: p53-like transcription factors
Family: p53 DNA-binding domain-like

Phyre2

PDB 3q06 chain B

3D model

Region: 227 - 419
Aligned: 175
Modelled: 193
Confidence: 99.7%
Identity: 23%
PDB header:cell cycle/dna
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: an induced fit mechanism regulates p53 dna binding kinetics to confer2 sequence specificity

Phyre2

PDB 2rmn chain A

3D model

Region: 245 - 409
Aligned: 151
Modelled: 165
Confidence: 99.5%
Identity: 27%
PDB header:cell cycle, antitumor protein
Chain: A: PDB Molecule:tumor protein 63;
PDBTitle: the solution structure of the p63 dna-binding domain

Phyre2

PDB 1b0x chain A

3D model

Region: 575 - 641
Aligned: 55
Modelled: 67
Confidence: 61.9%
Identity: 27%
Fold: SAM domain-like
Superfamily: SAM/Pointed domain
Family: SAM (sterile alpha motif) domain

Phyre2

PDB 1b0x chain A

3D model

Region: 575 - 641
Aligned: 55
Modelled: 67
Confidence: 61.9%
Identity: 27%
PDB header:transferase
Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase);
PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization.

Phyre2

PDB 3bq7 chain A

3D model

Region: 556 - 620
Aligned: 51
Modelled: 65
Confidence: 57.5%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase delta;
PDBTitle: sam domain of diacylglycerol kinase delta1 (e35g)

Phyre2

PDB 2kg5 chain A

3D model

Region: 575 - 641
Aligned: 55
Modelled: 67
Confidence: 48.3%
Identity: 18%
PDB header:signaling protein
Chain: A: PDB Molecule:arf-gap, rho-gap domain, ank repeat and ph
PDBTitle: nmr solution structure of arap3-sam

Phyre2

PDB 2dl0 chain A

3D model

Region: 575 - 644
Aligned: 58
Modelled: 70
Confidence: 44.5%
Identity: 17%
PDB header:signaling protein
Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1;
PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1

Phyre2

PDB 2k4p chain A

3D model

Region: 575 - 644
Aligned: 58
Modelled: 70
Confidence: 43.4%
Identity: 16%
PDB header:signaling protein
Chain: A: PDB Molecule:phosphatidylinositol-3,4,5-trisphosphate 5-
PDBTitle: solution structure of ship2-sam

Phyre2

PDB 1kx5 chain D

3D model

Region: 610 - 626
Aligned: 17
Modelled: 17
Confidence: 41.5%
Identity: 53%
Fold: Histone-fold
Superfamily: Histone-fold
Family: Nucleosome core histones

Phyre2

PDB 1eqz chain B

3D model

Region: 610 - 626
Aligned: 17
Modelled: 17
Confidence: 39.7%
Identity: 59%
Fold: Histone-fold
Superfamily: Histone-fold
Family: Nucleosome core histones

Phyre2

PDB 1s32 chain D

3D model

Region: 610 - 626
Aligned: 17
Modelled: 17
Confidence: 38.2%
Identity: 53%
Fold: Histone-fold
Superfamily: Histone-fold
Family: Nucleosome core histones

Phyre2

PDB 3k1r chain B

3D model

Region: 572 - 643
Aligned: 65
Modelled: 69
Confidence: 37.9%
Identity: 22%
PDB header:structural protein
Chain: B: PDB Molecule:usher syndrome type-1g protein;
PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans

Phyre2

PDB 3hil chain B

3D model

Region: 570 - 620
Aligned: 48
Modelled: 51
Confidence: 37.7%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: sam domain of human ephrin type-a receptor 1 (epha1)

Phyre2

PDB 3bs7 chain A

3D model

Region: 556 - 640
Aligned: 71
Modelled: 85
Confidence: 37.5%
Identity: 15%
PDB header:signaling protein
Chain: A: PDB Molecule:protein aveugle;
PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle

Phyre2
1
d1t4wa_
2
c2rp5A_
3
c2j1xA_
4
d2ac0a1
5
c2xipA_
6
d1hu8a_
7
c3q06B_
8
c2rmnA_
9
d1b0xa_
10
c1b0xA_
11
c3bq7A_
12
c2kg5A_
13
c2dl0A_
14
c2k4pA_
15
d1kx5d_
16
d1eqzb_
17
d1s32d_
18
c3k1rB_
19
c3hilB_
20
c3bs7A_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
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44
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46
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49
50
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52
53
54
55
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59
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61
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63
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69
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1t4wa_
100.0 100 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:p53 DNA-binding domain-like
2c2rp5A_
100.0 100 PDB header:transcription
Chain: A: PDB Molecule:putative uncharacterized protein cep-1;
PDBTitle: solution structure of the oligomerization domain in cep-1
3c2j1xA_
99.8 20 PDB header:nuclear protein
Chain: A: PDB Molecule:cellular tumor antigen p53;
PDBTitle: human p53 core domain mutant m133l-v203a-y220c-n239y-n268d
4d2ac0a1
99.8 22 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:p53 DNA-binding domain-like
5c2xipA_
99.8 23 PDB header:cell cycle
Chain: A: PDB Molecule:tumour protein p73;
PDBTitle: crystal structure of the dna binding domain of human tp732 refined at 1.8 a resolution
6d1hu8a_
99.8 23 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:p53 DNA-binding domain-like
7c3q06B_
99.7 23 PDB header:cell cycle/dna
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: an induced fit mechanism regulates p53 dna binding kinetics to confer2 sequence specificity
8c2rmnA_
99.5 27 PDB header:cell cycle, antitumor protein
Chain: A: PDB Molecule:tumor protein 63;
PDBTitle: the solution structure of the p63 dna-binding domain
9d1b0xa_
61.9 27 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
10c1b0xA_
61.9 27 PDB header:transferase
Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase);
PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization.
11c3bq7A_
57.5 14 PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase delta;
PDBTitle: sam domain of diacylglycerol kinase delta1 (e35g)
12c2kg5A_
48.3 18 PDB header:signaling protein
Chain: A: PDB Molecule:arf-gap, rho-gap domain, ank repeat and ph
PDBTitle: nmr solution structure of arap3-sam
13c2dl0A_
44.5 17 PDB header:signaling protein
Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1;
PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1
14c2k4pA_
43.4 16 PDB header:signaling protein
Chain: A: PDB Molecule:phosphatidylinositol-3,4,5-trisphosphate 5-
PDBTitle: solution structure of ship2-sam
15d1kx5d_
41.5 53 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
16d1eqzb_
39.7 59 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
17d1s32d_
38.2 53 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
18c3k1rB_
37.9 22 PDB header:structural protein
Chain: B: PDB Molecule:usher syndrome type-1g protein;
PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans
19c3hilB_
37.7 21 PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: sam domain of human ephrin type-a receptor 1 (epha1)
20c3bs7A_
37.5 15 PDB header:signaling protein
Chain: A: PDB Molecule:protein aveugle;
PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle
21d1ucva_
not modelled 36.4 22 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
22d1rg6a_
not modelled 34.3 16 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
23d1v38a_
not modelled 34.2 17 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
24c2eaoA_
not modelled 32.9 24 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:ephrin type-b receptor 1;
PDBTitle: solution structure of the c-terminal sam-domain of mouse2 ephrin type-b receptor 1 precursor (ec 2.7.1.112)
25d1coka_
not modelled 29.9 21 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
26d1q2ha_
not modelled 29.9 63 Fold:Dimerisation interlock
Superfamily:Phenylalanine zipper
Family:Adapter protein APS, dimerisation domain
27d1sgga_
not modelled 28.5 21 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
28d1jixa_
not modelled 28.1 50 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:beta-Glucosyltransferase (DNA-modifying)
29d1x40a1
not modelled 27.2 23 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
30c2gleA_
not modelled 24.5 17 PDB header:protein binding
Chain: A: PDB Molecule:neurabin-1;
PDBTitle: solution structure of neurabin sam domain
31d2f3na1
not modelled 23.6 17 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
32d2ccqa1
not modelled 23.2 20 Fold:PUG domain-like
Superfamily:PUG domain-like
Family:PUG domain
33c1vjqB_
not modelled 22.4 30 PDB header:structural genomics, de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability.
34c2ke7A_
not modelled 21.6 18 PDB header:protein binding
Chain: A: PDB Molecule:ankyrin repeat and sterile alpha motif domain-
PDBTitle: nmr structure of the first sam domain from aida1
35c2jssA_
not modelled 21.5 48 PDB header:chaperone/nuclear protein
Chain: A: PDB Molecule:chimera of histone h2b.1 and histone h2a.z;
PDBTitle: nmr structure of chaperone chz1 complexed with histone2 h2a.z-h2b
36c1tmxA_
not modelled 21.3 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase;
PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from2 nocardioides simplex 3e
37d1imhc2
not modelled 20.9 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:Rel/Dorsal transcription factors, DNA-binding domain
38d1pdaa2
not modelled 19.6 24 Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
39c3kkaD_
not modelled 19.6 21 PDB header:transferase
Chain: D: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: co-crystal structure of the sam domains of epha1 and epha2
40c2e8nA_
not modelled 19.4 19 PDB header:transferase, signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1)
41c2eamA_
not modelled 19.2 18 PDB header:signaling protein
Chain: A: PDB Molecule:putative 47 kda protein;
PDBTitle: solution structure of the n-terminal sam-domain of a human2 putative 47 kda protein
42d1tzyb_
not modelled 19.1 59 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
43d1wwva1
not modelled 18.5 26 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
44c2v2gC_
not modelled 18.4 24 PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxiredoxin 6;
PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form
45c3okzB_
not modelled 18.2 24 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein gbs0355;
PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127
46c2kncB_
not modelled 18.0 23 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
47d1ow5a_
not modelled 17.8 18 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
48c1ow5A_
not modelled 17.8 18 PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase ste11;
PDBTitle: nmr structure of the saccharomyces cerevisiae sam (sterile2 alpha motif) domain
49c3s88J_
not modelled 17.7 46 PDB header:immune system/viral protein
Chain: J: PDB Molecule:envelope glycoprotein;
PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6
50d1p7hl2
not modelled 17.6 14 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:Rel/Dorsal transcription factors, DNA-binding domain
51c3suiB_
not modelled 17.5 83 PDB header:calcium-binding protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: crystal structure of ca2+-calmodulin in complex with a trpv1 c-2 terminal peptide
52c2qkqA_
not modelled 17.4 26 PDB header:transferase
Chain: A: PDB Molecule:ephrin type-b receptor 4;
PDBTitle: structure of the sam domain of human ephrin type-b receptor2 4
53c2jynA_
not modelled 17.4 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0368 protein ypl225w;
PDBTitle: a novel solution nmr structure of protein yst0336 from2 saccharomyces cerevisiae. northeast structural genomics3 consortium target yt51/ontario centre for structural4 proteomics target yst0336
54c1s4xA_
not modelled 17.4 25 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: nmr structure of the integrin b3 cytoplasmic domain in dpc2 micelles
55d2r7ka1
not modelled 17.1 35 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:PurP N-terminal domain-like
56c4g5sE_
not modelled 17.1 54 PDB header:cell cycle/signaling protein
Chain: E: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl3/galphai3 complex
57c4g5sF_
not modelled 17.1 54 PDB header:cell cycle/signaling protein
Chain: F: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl3/galphai3 complex
58c2lcyA_
not modelled 17.0 38 PDB header:viral protein
Chain: A: PDB Molecule:virion spike glycoprotein;
PDBTitle: nmr structure of the complete internal fusion loop from ebolavirus gp22 at ph 5.5
59c1oxjA_
not modelled 16.6 18 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein smaug;
PDBTitle: crystal structure of the smaug rna binding domain
60d1d8ba_
not modelled 16.4 9 Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
61c2ddiA_
not modelled 15.7 17 PDB header:protein binding
Chain: A: PDB Molecule:wap, follistatin/kazal, immunoglobulin, kunitz
PDBTitle: nmr structure of the second kunitz domain of human wfikkn1
62c2l01A_
not modelled 14.6 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bvu3908 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr153
63c3ukzC_
not modelled 14.3 100 PDB header:protein transport/protein binding
Chain: C: PDB Molecule:nuclear cap-binding protein subunit 1;
PDBTitle: mouse importin alpha: mouse cbp80 cnls complex
64d1jmsa3
not modelled 14.1 18 Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
65d2f9zc1
not modelled 13.9 28 Fold:CNF1/YfiH-like putative cysteine hydrolases
Superfamily:CNF1/YfiH-like putative cysteine hydrolases
Family:CheD-like
66d1rvga_
not modelled 13.8 24 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
67d1id3d_
not modelled 13.5 65 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
68d1gtka2
not modelled 13.4 24 Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
69c2l02B_
not modelled 13.4 28 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375
70c1k09B_
not modelled 13.3 50 PDB header:de novo protein
Chain: B: PDB Molecule:core module ii;
PDBTitle: solution structure of betacore, a designed water soluble2 four-stranded antiparallel b-sheet protein
71d1oxja1
not modelled 13.3 16 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
72c4g5sG_
not modelled 13.2 63 PDB header:cell cycle/signaling protein
Chain: G: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl3/galphai3 complex
73c2kn8A_
not modelled 13.1 30 PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:dna cleavage and packaging protein large subunit, ul89;
PDBTitle: nmr structure of the c-terminal domain of pul89
74d1gjia2
not modelled 12.9 50 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:Rel/Dorsal transcription factors, DNA-binding domain
75d1v54g_
not modelled 12.8 50 Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIa
Family:Mitochondrial cytochrome c oxidase subunit VIa
76d1doqa_
not modelled 12.8 13 Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
77d1gvfa_
not modelled 12.8 12 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
78d1yela1
not modelled 12.7 15 Fold:DNA-binding pseudobarrel domain
Superfamily:DNA-binding pseudobarrel domain
Family:B3 DNA binding domain
79c2opiB_
not modelled 12.5 20 PDB header:lyase
Chain: B: PDB Molecule:l-fuculose-1-phosphate aldolase;
PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from bacteroides2 thetaiotaomicron
80c3qm3C_
not modelled 12.2 16 PDB header:lyase
Chain: C: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: 1.85 angstrom resolution crystal structure of fructose-bisphosphate2 aldolase (fba) from campylobacter jejuni
81c3lvgD_
not modelled 12.0 16 PDB header:structural protein
Chain: D: PDB Molecule:clathrin light chain b;
PDBTitle: crystal structure of a clathrin heavy chain and clathrin light chain2 complex
82c3csyJ_
not modelled 12.0 38 PDB header:immune system/viral protein
Chain: J: PDB Molecule:envelope glycoprotein gp2;
PDBTitle: crystal structure of the trimeric prefusion ebola virus glycoprotein2 in complex with a neutralizing antibody from a human survivor
83c2lmrA_
not modelled 11.9 14 PDB header:signaling protein
Chain: A: PDB Molecule:ankyrin repeat and sam domain-containing protein 1a;
PDBTitle: solution structure of the first sam domain of odin
84d1hd2a_
not modelled 11.8 18 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
85c2xhfA_
not modelled 11.8 6 PDB header:oxidoreductase
Chain: A: PDB Molecule:peroxiredoxin 5;
PDBTitle: crystal structure of peroxiredoxin 5 from alvinella pompejana
86c3d3rA_
not modelled 11.8 29 PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf;
PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
87d1miua4
not modelled 11.8 35 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
88c2o1uA_
not modelled 11.5 36 PDB header:chaperone
Chain: A: PDB Molecule:endoplasmin;
PDBTitle: structure of full length grp94 with amp-pnp bound
89d1a66a_
not modelled 11.5 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:Rel/Dorsal transcription factors, DNA-binding domain
90c3n9tA_
not modelled 11.2 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:pnpc;
PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4
91c3au9A_
not modelled 10.8 23 PDB header:isomerase/isomerase inhibitor
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of the quaternary complex-1 of an isomerase
92c3q94B_
not modelled 10.8 20 PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii;
PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor'
93c1m8oB_
not modelled 10.7 25 PDB header:membrane protein
Chain: B: PDB Molecule:platele integrin beta3 subunit: cytoplasmic
PDBTitle: platelet integrin alfaiib-beta3 cytoplasmic domain
94c3ihtB_
not modelled 10.6 44 PDB header:transferase
Chain: B: PDB Molecule:s-adenosyl-l-methionine methyl transferase;
PDBTitle: crystal structure of s-adenosyl-l-methionine methyl transferase2 (yp_165822.1) from silicibacter pomeroyi dss-3 at 1.80 a resolution
95c4de8A_
not modelled 10.5 18 PDB header:membrane protein
Chain: A: PDB Molecule:cps2a;
PDBTitle: lytr-cps2a-psr family protein with bound octaprenyl monophosphate2 lipid
96d1b4fa_
not modelled 10.5 19 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
97c2cqtA_
not modelled 9.8 9 PDB header:transferase
Chain: A: PDB Molecule:cellobiose phosphorylase;
PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate
98d1ooaa2
not modelled 9.7 29 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:Rel/Dorsal transcription factors, DNA-binding domain
99c2iswB_
not modelled 9.7 16 PDB header:lyase
Chain: B: PDB Molecule:putative fructose-1,6-bisphosphate aldolase;
PDBTitle: structure of giardia fructose-1,6-biphosphate aldolase in2 complex with phosphoglycolohydroxamate

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Transmembrane helix prediction 

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