Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ8BGC0
DateTue Jul 30 13:06:17 BST 2013
Unique Job ID80faff71e2095cf7
SequenceMSGNNLSGND ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.131 Y:74.402 Z:54.353
Model (left) based on template c2ghpC_
Top template information
PDB header:rna binding protein
Chain: C: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: crystal structure of the n-terminal 3 rna binding domains of the yeast2 splicing factor prp24
Confidence and coverage
Confidence:100.0% Coverage: 26%
199 residues ( 26% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
274 residues ( 36%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 63% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSGNNLSGNDEFDEQLRMQELYGGDPKEGDTQNEPSGEAHSLGQPPDDTPYEWDLDKKAW
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Disorder  ?????????









?????????????????
??

















?

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   .........70.........80.........90.........100.........110.........120
Sequence  FPKITEDFIATYQANYGFSSDGASSSTANVQDANTKAVEEPPQKEVPETPDSKRKGEKRK
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?

????????????????????????????????????????????
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   .........130.........140.........150.........160.........170.........180
Sequence  AESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQGN
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   .........190.........200.........210.........220.........230.........240
Sequence  LKGDGLCCYLKKESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKK
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??????????????









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   .........250.........260.........270.........280.........290.........300
Sequence  LSLQQKQLDWRPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFG
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   .........310.........320.........330.........340.........350.........360
Sequence  QIRKLLLFDRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWDGTTDYQVEETS
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?
???????
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   .........370.........380.........390.........400.........410.........420
Sequence  REREERLRGWEAFLNAPEASRGLRRMDSIAGSERPGPSRMRHFSEHPSMSNMKAQEATTG
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??????

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???????????
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   .........430.........440.........450.........460.........470.........480
Sequence  MAFEETIDENKFEKAEEGGESEGDASEKDAKEGGSDGDHPEREGGEGCSKKENEEGCPER
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Disorder  ????????????????????????????????????????????????????
???????
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   .........490.........500.........510.........520.........530.........540
Sequence  ALEPEEGNPQTEAQENGPEREARKKSKMDYEKNGFSKESEDNDLGKESEGEDSLKKESED
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   .........550.........560.........570.........580.........590.........600
Sequence  DDSEEESEEDSSEKQSQDGSDKEIEENGVKKDVDQDVSDKEFPEDVEKESEENETDKSEF
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??

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   .........610.........620.........630.........640.........650.........660
Sequence  DEGSERVLDEEGSEREFEEDSDEKEEEGDDDEEEVVYERVFDDDSDDIEEEEEADEKECE
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?????
???
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   .........670.........680.........690.........700.........710.........720
Sequence  DADDKEEDNDIDEKLFDDSDEKEDEEDTDGKKDDDASDKVFEDNSNEKLFDEEEGPNEKL
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Disorder  ????????????????????????????????????????????????????????????
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   .........730.........740.........750.......
Sequence  FDDSDERGTVGNVKEDGSQSTDSSFALSSSDDDDDEV
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Confidence Key
High(9)                    Low (0)
?Disordered ( 63%)
Alpha helix ( 51%)
Beta strand ( 9%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2ghp chain C

3D model

Region: 134 - 351
Aligned: 199
Modelled: 210
Confidence: 100.0%
Identity: 16%
PDB header:rna binding protein
Chain: C: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: crystal structure of the n-terminal 3 rna binding domains of the yeast2 splicing factor prp24

Phyre2

PDB 3s01 chain A

3D model

Region: 132 - 347
Aligned: 192
Modelled: 193
Confidence: 99.9%
Identity: 16%
PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l;
PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution

Phyre2

PDB 2adc chain A

3D model

Region: 128 - 347
Aligned: 194
Modelled: 220
Confidence: 99.9%
Identity: 19%
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1;
PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd34 complexed with cucucu rna

Phyre2

PDB 3h2u chain D

3D model

Region: 131 - 347
Aligned: 193
Modelled: 217
Confidence: 99.9%
Identity: 18%
PDB header:cell adhesion
Chain: D: PDB Molecule:raver-1;
PDBTitle: human raver1 rrm1, rrm2, and rrm3 domains in complex with2 human vinculin tail domain vt

Phyre2

PDB 1qm9 chain A

3D model

Region: 133 - 347
Aligned: 189
Modelled: 215
Confidence: 99.9%
Identity: 20%
PDB header:ribonucleoprotein
Chain: A: PDB Molecule:polypyrimidine tract-binding protein;
PDBTitle: nmr, representative structure

Phyre2

PDB 3sde chain B

3D model

Region: 131 - 349
Aligned: 151
Modelled: 175
Confidence: 99.9%
Identity: 29%
PDB header:rna binding protein
Chain: B: PDB Molecule:non-pou domain-containing octamer-binding protein;
PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono

Phyre2

PDB 2dit chain A domain 1

3D model

Region: 257 - 355
Aligned: 99
Modelled: 99
Confidence: 99.9%
Identity: 95%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 1u1q chain A

3D model

Region: 129 - 357
Aligned: 176
Modelled: 196
Confidence: 99.9%
Identity: 15%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2go9 chain A

3D model

Region: 133 - 349
Aligned: 151
Modelled: 162
Confidence: 99.9%
Identity: 15%
PDB header:rna binding protein
Chain: A: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: rrm domains 1 and 2 of prp24 from s. cerevisiae

Phyre2

PDB 2yh0 chain A

3D model

Region: 135 - 347
Aligned: 181
Modelled: 195
Confidence: 99.9%
Identity: 13%
PDB header:transcription
Chain: A: PDB Molecule:splicing factor u2af 65 kda subunit;
PDBTitle: solution structure of the closed conformation of human u2af65 tandem2 rrm1 and rrm2 domains

Phyre2

PDB 2qfj chain A

3D model

Region: 133 - 347
Aligned: 167
Modelled: 187
Confidence: 99.8%
Identity: 19%
PDB header:transcription repressor/dna
Chain: A: PDB Molecule:fbp-interacting repressor;
PDBTitle: crystal structure of first two rrm domains of fir bound to2 ssdna from a portion of fuse

Phyre2

PDB 1b7f chain A

3D model

Region: 132 - 347
Aligned: 159
Modelled: 178
Confidence: 99.8%
Identity: 26%
PDB header:rna-binding protein/rna
Chain: A: PDB Molecule:protein (sxl-lethal protein);
PDBTitle: sxl-lethal protein/rna complex

Phyre2

PDB 1rkj chain A

3D model

Region: 129 - 347
Aligned: 162
Modelled: 182
Confidence: 99.8%
Identity: 20%
PDB header:transcription/rna
Chain: A: PDB Molecule:nucleolin;
PDBTitle: solution structure of the complex formed by the two n-2 terminal rna-binding domains of nucleolin and a pre-rrna3 target

Phyre2

PDB 2dhs chain A

3D model

Region: 127 - 349
Aligned: 170
Modelled: 189
Confidence: 99.8%
Identity: 22%
PDB header:rna binding protein
Chain: A: PDB Molecule:cug triplet repeat rna-binding protein 1;
PDBTitle: solution structure of nucleic acid binding protein cugbp1ab2 and its binding study with dna and rna

Phyre2

PDB 3s6e chain B

3D model

Region: 260 - 348
Aligned: 88
Modelled: 89
Confidence: 99.8%
Identity: 27%
PDB header:rna binding protein
Chain: B: PDB Molecule:rna-binding protein 39;
PDBTitle: crystal structure of a rna binding motif protein 39 (rbm39) from mus2 musculus at 0.95 a resolution

Phyre2

PDB 1fnx chain H

3D model

Region: 131 - 347
Aligned: 160
Modelled: 179
Confidence: 99.8%
Identity: 26%
PDB header:immune system/rna
Chain: H: PDB Molecule:hu antigen c;
PDBTitle: solution structure of the huc rbd1-rbd2 complexed with the2 au-rich element

Phyre2

PDB 3md3 chain A

3D model

Region: 135 - 347
Aligned: 157
Modelled: 177
Confidence: 99.8%
Identity: 21%
PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the first two rrm domains of yeast poly(u)2 binding protein (pub1)

Phyre2

PDB 2f3j chain A

3D model

Region: 66 - 221
Aligned: 145
Modelled: 156
Confidence: 99.8%
Identity: 14%
PDB header:transport protein
Chain: A: PDB Molecule:rna and export factor binding protein 2;
PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155).

Phyre2

PDB 1o0p chain A

3D model

Region: 261 - 349
Aligned: 88
Modelled: 89
Confidence: 99.8%
Identity: 30%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2cjk chain A

3D model

Region: 131 - 347
Aligned: 157
Modelled: 177
Confidence: 99.8%
Identity: 20%
PDB header:rna-binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 4;
PDBTitle: structure of the rna binding domain of hrp1 in complex with2 rna

Phyre2
1

c2ghpC_
2

c3s01A_
3

c2adcA_
4

c3h2uD_
5

c1qm9A_
6

c3sdeB_
7

d2dita1
8

d1u1qa_
9

c2go9A_
10

c2yh0A_
11

c2qfjA_
12

c1b7fA_
13

c1rkjA_
14

c2dhsA_
15

c3s6eB_
16

c1fnxH_
17

c3md3A_
18

c2f3jA_
19

d1o0pa_
20

c2cjkA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ghpC_



100.0 16 PDB header:rna binding protein
Chain: C: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: crystal structure of the n-terminal 3 rna binding domains of the yeast2 splicing factor prp24
2c3s01A_



99.9 16 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l;
PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution
3c2adcA_



99.9 19 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1;
PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd34 complexed with cucucu rna
4c3h2uD_



99.9 18 PDB header:cell adhesion
Chain: D: PDB Molecule:raver-1;
PDBTitle: human raver1 rrm1, rrm2, and rrm3 domains in complex with2 human vinculin tail domain vt
5c1qm9A_



99.9 20 PDB header:ribonucleoprotein
Chain: A: PDB Molecule:polypyrimidine tract-binding protein;
PDBTitle: nmr, representative structure
6c3sdeB_



99.9 29 PDB header:rna binding protein
Chain: B: PDB Molecule:non-pou domain-containing octamer-binding protein;
PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono
7d2dita1



99.9 95 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
8d1u1qa_



99.9 15 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
9c2go9A_



99.9 15 PDB header:rna binding protein
Chain: A: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: rrm domains 1 and 2 of prp24 from s. cerevisiae
10c2yh0A_



99.9 13 PDB header:transcription
Chain: A: PDB Molecule:splicing factor u2af 65 kda subunit;
PDBTitle: solution structure of the closed conformation of human u2af65 tandem2 rrm1 and rrm2 domains
11c2qfjA_



99.8 19 PDB header:transcription repressor/dna
Chain: A: PDB Molecule:fbp-interacting repressor;
PDBTitle: crystal structure of first two rrm domains of fir bound to2 ssdna from a portion of fuse
12c1b7fA_



99.8 26 PDB header:rna-binding protein/rna
Chain: A: PDB Molecule:protein (sxl-lethal protein);
PDBTitle: sxl-lethal protein/rna complex
13c1rkjA_



99.8 20 PDB header:transcription/rna
Chain: A: PDB Molecule:nucleolin;
PDBTitle: solution structure of the complex formed by the two n-2 terminal rna-binding domains of nucleolin and a pre-rrna3 target
14c2dhsA_



99.8 22 PDB header:rna binding protein
Chain: A: PDB Molecule:cug triplet repeat rna-binding protein 1;
PDBTitle: solution structure of nucleic acid binding protein cugbp1ab2 and its binding study with dna and rna
15c3s6eB_



99.8 27 PDB header:rna binding protein
Chain: B: PDB Molecule:rna-binding protein 39;
PDBTitle: crystal structure of a rna binding motif protein 39 (rbm39) from mus2 musculus at 0.95 a resolution
16c1fnxH_



99.8 26 PDB header:immune system/rna
Chain: H: PDB Molecule:hu antigen c;
PDBTitle: solution structure of the huc rbd1-rbd2 complexed with the2 au-rich element
17c3md3A_



99.8 21 PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the first two rrm domains of yeast poly(u)2 binding protein (pub1)
18c2f3jA_



99.8 14 PDB header:transport protein
Chain: A: PDB Molecule:rna and export factor binding protein 2;
PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155).
19d1o0pa_



99.8 30 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
20c2cjkA_



99.8 20 PDB header:rna-binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 4;
PDBTitle: structure of the rna binding domain of hrp1 in complex with2 rna
21c2pehA_



not modelled 99.8 25 PDB header:protein binding
Chain: A: PDB Molecule:splicing factor 45;
PDBTitle: crystal structure of the uhm domain of human spf45 in complex with2 sf3b155-ulm5
22c2g4bA_



not modelled 99.8 15 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:splicing factor u2af 65 kda subunit;
PDBTitle: structure of u2af65 variant with polyuridine tract
23c2dnyA_



not modelled 99.8 35 PDB header:rna binding protein
Chain: A: PDB Molecule:fuse-binding protein-interacting repressor,
PDBTitle: solution structure of the third rna binding domain of fbp-2 interacting repressor, siahbp1
24c2la6A_



not modelled 99.8 26 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein fus;
PDBTitle: solution nmr structure of rrm domain of rna-binding protein fus from2 homo sapiens, northeast structural genomics consortium target hr6430a
25c2lcwA_



not modelled 99.8 22 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein fus;
PDBTitle: solution structure of fus/tls rrm domain
26c1cvjF_



not modelled 99.7 27 PDB header:gene regulation/rna
Chain: F: PDB Molecule:polyadenylate binding protein 1;
PDBTitle: x-ray crystal structure of the poly(a)-binding protein in2 complex with polyadenylate rna
27d2cpea1



not modelled 99.7 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
28c2kn4A_



not modelled 99.7 18 PDB header:rna binding protein
Chain: A: PDB Molecule:immunoglobulin g-binding protein g, splicing factor;
PDBTitle: the structure of the rrm domain of sc35
29c3s8sA_



not modelled 99.7 15 PDB header:transcription
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd1a;
PDBTitle: crystal structure of the rrm domain of human setd1a
30d1hl6a_



not modelled 99.7 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
31d1n54b_



not modelled 99.7 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
32d1u6fa1



not modelled 99.7 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
33c2ku7A_



not modelled 99.7 19 PDB header:transcription
Chain: A: PDB Molecule:mll1 phd3-cyp33 rrm chimeric protein;
PDBTitle: solution structure of mll1 phd3-cyp33 rrm chimeric protein
34c2do0A_



not modelled 99.7 14 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m;
PDBTitle: solution structure of the rna binding domain of2 heterogeneous nuclear ribonucleoprotein m
35d1h2tz_



not modelled 99.7 14 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
36c3pgwS_



not modelled 99.7 19 PDB header:splicing/dna/rna
Chain: S: PDB Molecule:u1-70k;
PDBTitle: crystal structure of human u1 snrnp
37c2i38A_



not modelled 99.7 19 PDB header:rna binding protein/chimera
Chain: A: PDB Molecule:fusion protein consists of immunoglobin g-
PDBTitle: solution structure of the rrm of srp20
38c2jwnB_



not modelled 99.7 19 PDB header:rna binding protein
Chain: B: PDB Molecule:embryonic polyadenylate-binding protein 2-b;
PDBTitle: solution nmr structure of the protease-resistent domain of2 xenopus laevis epabp2
39d1jmta_



not modelled 99.7 25 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Splicing factor U2AF subunits
40c2dgpA_



not modelled 99.7 24 PDB header:rna binding protein
Chain: A: PDB Molecule:bruno-like 4, rna binding protein;
PDBTitle: solution structure of the n-terminal rna binding domain in2 bruno-like 4 rna-binding protein
41c2fy1A_



not modelled 99.7 23 PDB header:structural protein/rna
Chain: A: PDB Molecule:rna-binding motif protein, y chromosome, family
PDBTitle: a dual mode of rna recognition by the rbmy protein
42c2ywkA_



not modelled 99.7 28 PDB header:rna binding protein
Chain: A: PDB Molecule:putative rna-binding protein 11;
PDBTitle: crystal structure of rrm-domain derived from human putative2 rna-binding protein 11
43c3egnA_



not modelled 99.7 16 PDB header:splicing
Chain: A: PDB Molecule:rna-binding protein 40;
PDBTitle: c-terminal rna recognition motif of the u11/u12 65k protein
44d1whxa_



not modelled 99.7 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
45c2jrsA_



not modelled 99.7 21 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 39;
PDBTitle: solution nmr structure of caper rrm2 domain. northeast2 structural genomics target hr4730a
46d2cpza1



not modelled 99.7 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
47d1x5oa1



not modelled 99.7 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
48c2dnoA_



not modelled 99.7 16 PDB header:rna binding protein
Chain: A: PDB Molecule:trinucleotide repeat containing 4 variant;
PDBTitle: solution structure of rna binding domain in trinucleotide2 repeat containing 4 variant
49d1fjeb1



not modelled 99.6 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
50c3cw18_



not modelled 99.6 21 PDB header:splicing
Chain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda;
PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop; PDBTitle: crystal structure of human spliceosomal u1 snrnp
51d1s79a_



not modelled 99.6 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
52d1l3ka1



not modelled 99.6 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
53d1fnxh2



not modelled 99.6 34 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
54c3bs9A_



not modelled 99.6 28 PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolysin tia-1 isoform p40;
PDBTitle: x-ray structure of human tia-1 rrm2
55c2rneA_



not modelled 99.6 26 PDB header:rna binding protein
Chain: A: PDB Molecule:tia1 protein;
PDBTitle: solution structure of the second rna recognition motif2 (rrm) of tia-1
56c2d9pA_



not modelled 99.6 23 PDB header:rna binding protein
Chain: A: PDB Molecule:polyadenylate-binding protein 3;
PDBTitle: solution structure of rna binding domain 4 in2 polyadenylation binding protein 3
57d1x5ua1



not modelled 99.6 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
58c2dhgA_



not modelled 99.6 16 PDB header:rna binding protein
Chain: A: PDB Molecule:trna selenocysteine associated protein (secp43);
PDBTitle: solution structure of the c-terminal rna recognition motif2 in trna selenocysteine associated protein
59c2e44A_



not modelled 99.6 15 PDB header:rna binding protein
Chain: A: PDB Molecule:insulin-like growth factor 2 mrna binding
PDBTitle: solution structure of rna binding domain in insulin-like2 growth factor 2 mrna binding protein 3
60c2dnzA_



not modelled 99.6 29 PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna-binding protein 23;
PDBTitle: solution structure of the second rna binding domain of rna2 binding motif protein 23
61d2f9da1



not modelled 99.6 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
62d1b7fa1



not modelled 99.6 29 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
63d1fxla1



not modelled 99.6 29 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
64d1x4ha1



not modelled 99.6 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
65d1whwa_



not modelled 99.6 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
66d1h2vz_



not modelled 99.6 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
67d1fj7a_



not modelled 99.6 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
68d1fnxh1



not modelled 99.6 30 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
69c4f26A_



not modelled 99.6 24 PDB header:translation
Chain: A: PDB Molecule:polyadenylate-binding protein 1;
PDBTitle: crystal structure of the second rrm domain of human pabpc1 a ph 9.0
70d1no8a_



not modelled 99.6 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
71c1no8A_



not modelled 99.6 18 PDB header:rna binding protein
Chain: A: PDB Molecule:aly;
PDBTitle: solution structure of the nuclear factor aly rbd domain
72c2dngA_



not modelled 99.6 17 PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4h;
PDBTitle: solution structure of rna binding domain in eukaryotic2 translation initiation factor 4h
73d2up1a2



not modelled 99.6 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
74d2cq0a1



not modelled 99.6 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
75d2adca1



not modelled 99.6 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
76c2do4A_



not modelled 99.6 20 PDB header:immune system
Chain: A: PDB Molecule:squamous cell carcinoma antigen recognized by t-
PDBTitle: solution structure of the rna binding domain of squamous2 cell carcinoma antigen recognized by t cells 3
77d1zh5a2



not modelled 99.6 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
78c3q2tC_



not modelled 99.6 22 PDB header:rna binding protein/rna
Chain: C: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6;
PDBTitle: crystal structure of cfim68 rrm/cfim25/rna complex
79c2osrA_



not modelled 99.6 21 PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolar protein 3;
PDBTitle: nmr structure of rrm-2 of yeast npl3 protein
80d1uawa_



not modelled 99.6 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
81d2cqpa1



not modelled 99.6 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
82d1fxla2



not modelled 99.6 36 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
83d2j0sd1



not modelled 99.6 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
84d2cq4a1



not modelled 99.6 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
85d2cpya1



not modelled 99.6 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
86c2jvrA_



not modelled 99.6 21 PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolar protein 3;
PDBTitle: segmental isotope labeling of npl3p
87c2dnmA_



not modelled 99.6 20 PDB header:rna binding protein
Chain: A: PDB Molecule:srp46 splicing factor;
PDBTitle: solution structure of rna binding domain in srp46 splicing2 factor
88d1b7fa2



not modelled 99.6 33 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
89c2kxnB_



not modelled 99.6 21 PDB header:rna binding protein/rna
Chain: B: PDB Molecule:transformer-2 protein homolog beta;
PDBTitle: nmr structure of human tra2beta1 rrm in complex with aagaac rna
90d1cvja1



not modelled 99.6 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
91c3nnhA_



not modelled 99.6 16 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:cugbp elav-like family member 1;
PDBTitle: crystal structure of the cugbp1 rrm1 with guuguuuuguuu rna
92d1x4ba1



not modelled 99.6 15 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
93c3p6yD_



not modelled 99.6 22 PDB header:rna binding protein/rna
Chain: D: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6;
PDBTitle: cf im25-cf im68-uguaa complex
94c2e5jA_



not modelled 99.6 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain
PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing
95c2divA_



not modelled 99.6 13 PDB header:rna binding protein
Chain: A: PDB Molecule:trna selenocysteine associated protein;
PDBTitle: solution structure of the rrm domain of trna selenocysteine2 associated protein
96c2fc8A_



not modelled 99.6 20 PDB header:rna binding protein
Chain: A: PDB Molecule:ncl protein;
PDBTitle: solution structure of the rrm_1 domain of ncl protein
97d2ghpa2



not modelled 99.6 14 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
98d2msta_



not modelled 99.6 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
99d2disa1



not modelled 99.6 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
100c2x1aA_



not modelled 99.6 19 PDB header:transcription/rna
Chain: A: PDB Molecule:mrna 3'-end-processing protein rna15;
PDBTitle: structure of rna15 rrm with rna bound (g)
101d1wg5a_



not modelled 99.6 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
102c3b4mD_



not modelled 99.6 29 PDB header:rna binding protein
Chain: D: PDB Molecule:polyadenylate-binding protein 2;
PDBTitle: crystal structure of human pabpn1 rrm
103d1wi8a_



not modelled 99.6 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
104c3ex7B_



not modelled 99.6 19 PDB header:hydrolase/rna binding protein/rna
Chain: B: PDB Molecule:rna-binding protein 8a;
PDBTitle: the crystal structure of ejc in its transition state
105d1hd0a_



not modelled 99.6 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
106d1l3ka2



not modelled 99.6 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
107c2dgsA_



not modelled 99.6 23 PDB header:rna binding protein
Chain: A: PDB Molecule:daz-associated protein 1;
PDBTitle: solution structure of the second rna binding domain in daz-2 associated protein 1
108d2cqga1



not modelled 99.6 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
109d2cqba1



not modelled 99.6 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
110d2cqca1



not modelled 99.6 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
111c2dgtA_



not modelled 99.6 20 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 30;
PDBTitle: solution structure of the second rna binding domain in rna-2 binding protein 30
112d2cqda1



not modelled 99.6 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
113c3md1B_



not modelled 99.6 16 PDB header:rna binding protein
Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1)
114c2dgwA_



not modelled 99.6 19 PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna-binding protein 19;
PDBTitle: solution structure of the second rna recognition motif in2 rna-binding protein 19
115d2u2fa_



not modelled 99.6 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
116c2rs2A_



not modelled 99.6 18 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:rna-binding protein musashi homolog 1;
PDBTitle: 1h, 13c, and 15n chemical shift assignments for musashi1 rbd1:r(guagu)2 complex
117d1weza_



not modelled 99.6 15 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
118d2cqia1



not modelled 99.6 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
119d1x4aa1



not modelled 99.6 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
120d2cpha1



not modelled 99.6 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite