Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ80WC7
DateWed Jul 10 14:08:33 BST 2013
Unique Job IDc321eb8e04bd8197
SequenceMVMAAKKGPG ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.678 Y:58.947 Z:39.995
Model (left) based on template c2d9lA_
Top template information
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip
Confidence and coverage
Confidence:100.0% Coverage: 27%
130 residues ( 27% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 77% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MVMAAKKGPGPGGGVGGSKAEAEAASEVWCRRVRELGGCSQAGNRHCFECAQRGVTYVDI
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   .........70.........80.........90.........100.........110.........120
Sequence  TVGSFVCTTCSGLLRGLNPPHRVKSISMTTFTEPEVLFLQSRGNEVCRKIWLGLFDARTS
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????
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   .........130.........140.........150.........160.........170.........180
Sequence  LIPDSRDPQKVKEFLQEKYEKKRWYVPPEQVKGPSYSKGSVSATPVQGSVPEGKPIRTLL
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Disorder 

?????
















????????????????????????????????????
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   .........190.........200.........210.........220.........230.........240
Sequence  GDPVPSLSDPASTSSQPGSQSQARSSSQARSSQPPSHSSTKKASTDLLADIGGDPFAAPQ
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   .........250.........260.........270.........280.........290.........300
Sequence  VVPAFASFPGFGVGQTPAHGGFANFDAFSSSPSSSTFGSLPPSVQAPFQAQPTPAGSGQM
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   .........310.........320.........330.........340.........350.........360
Sequence  SAFGVAPLAAASQPNNLADVGGLLGPRMAAGGLPGSVFGMPSQVPALQSAVPGVSGSGGL
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   .........370.........380.........390.........400.........410.........420
Sequence  PFGAYTNPFATPAQAQLPSTNPFQPNGLASGPGFGMSSVRPGLLQPVPPSGAFASPFSAP
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   .........430.........440.........450.........460.........470.........
Sequence  VFPTQAGLADQQNGSSFGDLGTSKLGQRPLSQPAGISTNPFMTGSSAFASKPPTTNPFL
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Confidence Key
High(9)                    Low (0)
?Disordered ( 77%)
Alpha helix ( 16%)
Beta strand ( 3%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2d9l chain A

3D model

Region: 26 - 157
Aligned: 130
Modelled: 132
Confidence: 100.0%
Identity: 69%
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip

Phyre2

PDB 2crr chain A

3D model

Region: 14 - 157
Aligned: 139
Modelled: 144
Confidence: 100.0%
Identity: 27%
PDB header:protein transport
Chain: A: PDB Molecule:stromal membrane-associated protein smap1b;
PDBTitle: solution structure of arfgap domain from human smap1

Phyre2

PDB 3lvr chain E

3D model

Region: 27 - 151
Aligned: 123
Modelled: 125
Confidence: 100.0%
Identity: 20%
PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium

Phyre2

PDB 2iqj chain B

3D model

Region: 24 - 153
Aligned: 122
Modelled: 130
Confidence: 100.0%
Identity: 22%
PDB header:protein transport
Chain: B: PDB Molecule:stromal membrane-associated protein 1-like;
PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like

Phyre2

PDB 1dcq chain A domain 2

3D model

Region: 25 - 148
Aligned: 119
Modelled: 124
Confidence: 100.0%
Identity: 21%
Fold: ArfGap/RecO-like zinc finger
Superfamily: ArfGap/RecO-like zinc finger
Family: Pyk2-associated protein beta ARF-GAP domain

Phyre2

PDB 3feh chain A

3D model

Region: 21 - 150
Aligned: 124
Modelled: 130
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase activator
Chain: A: PDB Molecule:centaurin-alpha-1;
PDBTitle: crystal structure of full length centaurin alpha-1

Phyre2

PDB 3jue chain A

3D model

Region: 29 - 151
Aligned: 118
Modelled: 118
Confidence: 100.0%
Identity: 22%
PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1

Phyre2

PDB 2b0o chain F

3D model

Region: 25 - 150
Aligned: 121
Modelled: 126
Confidence: 100.0%
Identity: 19%
PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain

Phyre2

PDB 1dcq chain A

3D model

Region: 25 - 151
Aligned: 122
Modelled: 127
Confidence: 100.0%
Identity: 20%
PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.

Phyre2

PDB 3t9k chain A

3D model

Region: 29 - 156
Aligned: 123
Modelled: 128
Confidence: 100.0%
Identity: 22%
PDB header:protein transport
Chain: A: PDB Molecule:arf-gap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of acap1 c-portion mutant s554d fused with integrin2 beta1 peptide

Phyre2

PDB 2owa chain B

3D model

Region: 15 - 143
Aligned: 120
Modelled: 129
Confidence: 100.0%
Identity: 20%
PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)

Phyre2

PDB 2p57 chain A

3D model

Region: 27 - 142
Aligned: 112
Modelled: 116
Confidence: 100.0%
Identity: 19%
PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein

Phyre2

PDB 2crw chain A

3D model

Region: 10 - 151
Aligned: 136
Modelled: 142
Confidence: 100.0%
Identity: 21%
PDB header:signaling protein
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating
PDBTitle: solution structure of the arfgap domain of adp-ribosylation2 factor gtpaseactivating protein 3 (arfgap 3)

Phyre2

PDB 3o47 chain A

3D model

Region: 25 - 152
Aligned: 123
Modelled: 128
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein

Phyre2

PDB 3dwd chain B

3D model

Region: 26 - 142
Aligned: 111
Modelled: 117
Confidence: 100.0%
Identity: 23%
PDB header:transport protein
Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1;
PDBTitle: crystal structure of the arfgap domain of human arfgap1

Phyre2

PDB 1u5k chain A domain 2

3D model

Region: 30 - 142
Aligned: 88
Modelled: 98
Confidence: 97.0%
Identity: 18%
Fold: ArfGap/RecO-like zinc finger
Superfamily: ArfGap/RecO-like zinc finger
Family: RecO C-terminal domain-like

Phyre2

PDB 1u5k chain A

3D model

Region: 30 - 142
Aligned: 88
Modelled: 98
Confidence: 96.7%
Identity: 15%
PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco

Phyre2

PDB 3bji chain A

3D model

Region: 20 - 78
Aligned: 59
Modelled: 59
Confidence: 96.0%
Identity: 15%
PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1

Phyre2

PDB 2d8u chain A

3D model

Region: 37 - 86
Aligned: 46
Modelled: 50
Confidence: 77.6%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin ligase trim63;
PDBTitle: solution structure of the b-box domain of the human2 tripartite motif-containing 63 protein

Phyre2

PDB 1cjy chain A domain 2

3D model

Region: 90 - 143
Aligned: 36
Modelled: 36
Confidence: 76.5%
Identity: 17%
Fold: FabD/lysophospholipase-like
Superfamily: FabD/lysophospholipase-like
Family: Lysophospholipase

Phyre2

PDB 1wr1 chain B

3D model

Region: 9 - 37
Aligned: 28
Modelled: 28
Confidence: 52.1%
Identity: 36%
PDB header:signaling protein
Chain: B: PDB Molecule:ubiquitin-like protein dsk2;
PDBTitle: the complex sturcture of dsk2p uba with ubiquitin

Phyre2
1

c2d9lA_
2

c2crrA_
3

c3lvrE_
4

c2iqjB_
5

d1dcqa2
6

c3fehA_
7

c3jueA_
8

c2b0oF_
9

c1dcqA_
10

c3t9kA_
11

c2owaB_
12

c2p57A_
13

c2crwA_
14

c3o47A_
15

c3dwdB_
16

d1u5ka2
17

c1u5kA_
18

c3bjiA_
19

c2d8uA_
20

d1cjya2
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c1wr1B_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2d9lA_



100.0 69 PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip
2c2crrA_



100.0 27 PDB header:protein transport
Chain: A: PDB Molecule:stromal membrane-associated protein smap1b;
PDBTitle: solution structure of arfgap domain from human smap1
3c3lvrE_



100.0 20 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
4c2iqjB_



100.0 22 PDB header:protein transport
Chain: B: PDB Molecule:stromal membrane-associated protein 1-like;
PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like
5d1dcqa2



100.0 21 Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:Pyk2-associated protein beta ARF-GAP domain
6c3fehA_



100.0 23 PDB header:hydrolase activator
Chain: A: PDB Molecule:centaurin-alpha-1;
PDBTitle: crystal structure of full length centaurin alpha-1
7c3jueA_



100.0 22 PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1
8c2b0oF_



100.0 19 PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain
9c1dcqA_



100.0 20 PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.
10c3t9kA_



100.0 22 PDB header:protein transport
Chain: A: PDB Molecule:arf-gap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of acap1 c-portion mutant s554d fused with integrin2 beta1 peptide
11c2owaB_



100.0 20 PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)
12c2p57A_



100.0 19 PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein
13c2crwA_



100.0 21 PDB header:signaling protein
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating
PDBTitle: solution structure of the arfgap domain of adp-ribosylation2 factor gtpaseactivating protein 3 (arfgap 3)
14c3o47A_



100.0 24 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
15c3dwdB_



100.0 23 PDB header:transport protein
Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1;
PDBTitle: crystal structure of the arfgap domain of human arfgap1
16d1u5ka2



97.0 18 Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:RecO C-terminal domain-like
17c1u5kA_



96.7 15 PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco
18c3bjiA_



96.0 15 PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1
19c2d8uA_



77.6 20 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin ligase trim63;
PDBTitle: solution structure of the b-box domain of the human2 tripartite motif-containing 63 protein
20d1cjya2



76.5 17 Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:Lysophospholipase
21c3ihpB_



not modelled 75.0 20 PDB header:hydrolase
Chain: B: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: covalent ubiquitin-usp5 complex
22d2ba0d2



not modelled 74.2 14 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
23c2vrwB_



not modelled 73.4 11 PDB header:signaling protein
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor
24c3c5kA_



not modelled 73.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:histone deacetylase 6;
PDBTitle: crystal structure of human hdac6 zinc finger domain
25c1kxuA_



not modelled 72.5 19 PDB header:regulatory protein
Chain: A: PDB Molecule:cyclin h;
PDBTitle: cyclin h, a positive regulatory subunit of cdk activating kinase
26d1y0ja1



not modelled 71.8 19 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
27d2br2b2



not modelled 69.1 18 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
28d2djaa1



not modelled 68.0 20 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
29d2je6b2



not modelled 67.1 21 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
30c2difA_



not modelled 67.0 22 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 39;
PDBTitle: one sequence two fold ? : miss fold of the zf-b-box domain2 from human tripartite motif protein 39
31c2junA_



not modelled 67.0 25 PDB header:ligase
Chain: A: PDB Molecule:midline-1;
PDBTitle: structure of the mid1 tandem b-boxes reveals an interaction2 reminiscent of intermolecular ring heterodimers
32c2yrgA_



not modelled 66.6 29 PDB header:ligase
Chain: A: PDB Molecule:tripartite motif-containing protein 5;
PDBTitle: solution structure of the b-box domain from tripartite2 motif-containing protein 5
33c2egmA_



not modelled 66.2 19 PDB header:transcription/metal binding protein
Chain: A: PDB Molecule:tripartite motif-containing protein 41;
PDBTitle: solution structure of the zf-b_box domain from human2 tripartite motif protein 41
34d2idaa1



not modelled 65.7 29 Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
35d2dq5a1



not modelled 61.0 27 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
36d5gata_



not modelled 60.7 21 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
37c2bg5C_



not modelled 60.5 16 PDB header:transferase
Chain: C: PDB Molecule:phosphoenolpyruvate-protein kinase;
PDBTitle: crystal structure of the phosphoenolpyruvate-binding enzyme2 i-domain from the thermoanaerobacter tengcongensis pep:3 sugar phosphotransferase system (pts)
38c3ky9B_



not modelled 59.7 13 PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
39d2a2pa1



not modelled 56.8 24 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Selenoprotein W-related
40d2g45a1



not modelled 56.6 23 Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
41c2gb5B_



not modelled 56.6 21 PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
42d2crga1



not modelled 56.3 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
43c2hwgA_



not modelled 55.1 11 PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of phosphorylated enzyme i of the2 phosphoenolpyruvate:sugar phosphotransferase system
44d1zbdb_



not modelled 53.8 20 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
45c3r07A_



not modelled 52.4 16 PDB header:transferase
Chain: A: PDB Molecule:lipoate-protein ligase a subunit 1;
PDBTitle: structural analysis of an archaeal lipoylation system. a bi-partite2 lipoate protein ligase and its e2 lipoyl domain from thermoplasma3 acidophilum
46c2zetD_



not modelled 52.1 21 PDB header:signaling protein
Chain: D: PDB Molecule:melanophilin;
PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin
47c1wr1B_



52.1 36 PDB header:signaling protein
Chain: B: PDB Molecule:ubiquitin-like protein dsk2;
PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
48d1gnfa_



not modelled 51.4 19 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
49d1jkwa1



not modelled 50.4 19 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
50c2yusA_



not modelled 50.0 16 PDB header:transcription
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-
PDBTitle: solution structure of the sant domain of human swi/snf-2 related matrix-associated actin-dependent regulator of3 chromatin subfamily c member 1
51c2eqrA_



not modelled 48.8 17 PDB header:transcription
Chain: A: PDB Molecule:nuclear receptor corepressor 1;
PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1
52c2kgoA_



not modelled 48.6 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ybii;
PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402
53c3h9mA_



not modelled 48.1 23 PDB header:lyase
Chain: A: PDB Molecule:p-aminobenzoate synthetase, component i;
PDBTitle: crystal structure of para-aminobenzoate synthetase,2 component i from cytophaga hutchinsonii
54d2vuti1



not modelled 48.0 23 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
55d2g5fa1



not modelled 47.3 5 Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
56c2kdxA_



not modelled 45.2 20 PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
57c1d4uA_



not modelled 44.2 25 PDB header:dna binding protein
Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd);
PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies
58c1x79C_



not modelled 44.2 31 PDB header:protein transport
Chain: C: PDB Molecule:rab gtpase binding effector protein 1;
PDBTitle: crystal structure of human gga1 gat domain complexed with2 the gat-binding domain of rabaptin5
59c3q8dB_



not modelled 44.0 15 PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein reco;
PDBTitle: e. coli reco complex with ssb c-terminus
60d3gata_



not modelled 43.6 16 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
61d2d8ua1



not modelled 43.2 18 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
62c4jxjA_



not modelled 43.1 17 PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a;
PDBTitle: crystal structure of ribosomal rna small subunit methyltransferase a2 from rickettsia bellii determined by iodide sad phasing
63c3mhsA_



not modelled 43.0 11 PDB header:hydrolase/transcription regulator/protei
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 8;
PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde
64c2eblA_



not modelled 43.0 23 PDB header:transcription
Chain: A: PDB Molecule:coup transcription factor 1;
PDBTitle: solution structure of the zinc finger, c4-type domain of2 human coup transcription factor 1
65c1x68A_



not modelled 42.8 20 PDB header:protein binding
Chain: A: PDB Molecule:fhl5 protein;
PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein
66c3pihA_



not modelled 42.5 19 PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein a;
PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
67c2dvkA_



not modelled 41.9 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0130 protein ape0816;
PDBTitle: crystal structure of hypothetical protein from aeropyrum pernix
68c3w2zA_



not modelled 41.8 23 PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cyanobacterial protein
69c1x6iB_



not modelled 41.5 6 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ygfy;
PDBTitle: crystal structure of ygfy from escherichia coli
70c4grhA_



not modelled 41.0 8 PDB header:transferase
Chain: A: PDB Molecule:aminodeoxychorismate synthase;
PDBTitle: crystal structure of pabb of stenotrophomonas maltophilia
71c1nltA_



not modelled 40.7 26 PDB header:protein transport
Chain: A: PDB Molecule:mitochondrial protein import protein mas5;
PDBTitle: the crystal structure of hsp40 ydj1
72d2bkra1



not modelled 40.6 13 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
73d2nn6b2



not modelled 40.5 6 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
74c1hk8A_



not modelled 39.6 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp
75d1hk8a_



not modelled 39.6 22 Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
76d1pjua1



not modelled 39.6 30 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
77c3zey8_



not modelled 38.9 33 PDB header:ribosome
Chain: 8: PDB Molecule:ribosomal protein s29, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
78c2o1tB_



not modelled 38.6 17 PDB header:chaperone
Chain: B: PDB Molecule:endoplasmin;
PDBTitle: structure of middle plus c-terminal domains (m+c) of grp94
79c3j20P_



not modelled 38.3 33 PDB header:ribosome
Chain: P: PDB Molecule:30s ribosomal protein s14p type z;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
80d2cora1



not modelled 38.2 17 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
81d2dida1



not modelled 38.1 19 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
82c2lb5A_



not modelled 37.9 16 PDB header:transferase
Chain: A: PDB Molecule:sensor histidine kinase;
PDBTitle: refined structural basis for the photoconversion of a phytochrome to2 the activated far-red light-absorbing form
83c2yvoA_



not modelled 37.4 17 PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8
84c2xssB_



not modelled 37.2 7 PDB header:hydrolase
Chain: B: PDB Molecule:cgmp-specific 3', 5'-cyclic phosphodiesterase;
PDBTitle: crystal structure of gafb from the human phosphodiesterase 5
85c1l4aE_



not modelled 37.2 14 PDB header:endocytosis/exocytosis
Chain: E: PDB Molecule:synaphin a;
PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei
86d1qdla_



not modelled 37.1 5 Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
87c2d8vA_



not modelled 37.0 23 PDB header:metal binding protein
Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 19;
PDBTitle: solution structure of the b-box domain of the zinc finger2 fyve domain-containing protein 19 from mus musculus
88c2qg3B_



not modelled 36.8 16 PDB header:unknown function
Chain: B: PDB Molecule:upf0130 protein af_2059;
PDBTitle: crystal structure of a tyw3 methyltransferase-like protein (af_2059)2 from archaeoglobus fulgidus dsm 4304 at 1.95 a resolution
89c2cszA_



not modelled 36.6 29 PDB header:signaling protein
Chain: A: PDB Molecule:synaptotagmin-like protein 4;
PDBTitle: solution structure of the ring domain of the synaptotagmin-2 like protein 4
90c3k1fM_



not modelled 35.7 28 PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of rna polymerase ii in complex with tfiib
91c1v85A_



not modelled 34.6 17 PDB header:apoptosis
Chain: A: PDB Molecule:similar to ring finger protein 36;
PDBTitle: sterile alpha motif (sam) domain of mouse bifunctional2 apoptosis regulator
92d2o9ca1



not modelled 34.5 13 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
93d1pfta_



not modelled 34.1 32 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
94d1unld_



not modelled 33.6 38 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
95c4hc7B_



not modelled 33.3 16 PDB header:transcription/dna
Chain: B: PDB Molecule:trans-acting t-cell-specific transcription factor gata-3;
PDBTitle: crystal structure of the full dna binding domain of gata3-complex 2
96c1unhD_



not modelled 33.0 38 PDB header:cell cycle
Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1;
PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin.
97c3d00A_



not modelled 32.9 24 PDB header:metal binding protein
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e;
PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution
98d1cvra2



not modelled 32.5 14 Fold:Caspase-like
Superfamily:Caspase-like
Family:Gingipain R (RgpB), N-terminal domain
99c1dvbA_



not modelled 32.3 26 PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
100c2j83B_



not modelled 32.2 20 PDB header:hydrolase
Chain: B: PDB Molecule:ulilysin;
PDBTitle: ulilysin metalloprotease in complex with batimastat.
101c2k8dA_



not modelled 31.6 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb;
PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase
102d1dl6a_



not modelled 31.4 21 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
103c1freA_



not modelled 31.2 24 PDB header:zinc-binding protein
Chain: A: PDB Molecule:nuclear factor xnf7;
PDBTitle: xnf7 bbox, developmental protein, ph 7.5, 30 c, with zinc,2 nmr, 1 structure
104c2i6yA_



not modelled 30.7 5 PDB header:lyase
Chain: A: PDB Molecule:anthranilate synthase component i, putative;
PDBTitle: structure and mechanism of mycobacterium tuberculosis salicylate2 synthase, mbti
105d1v6za2



not modelled 30.6 20 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
106d1xc5a1



not modelled 30.5 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
107c3qi6B_



not modelled 30.2 21 PDB header:lyase
Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs);
PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99
108c4fofA_



not modelled 30.0 7 PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the blue-light absorbing form of the2 thermosynechococcus elongatus pixj gaf-domain
109d1d0qa_



not modelled 29.8 17 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:DNA primase zinc finger
110d2nn6d2



not modelled 29.5 20 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
111c2gq0B_



not modelled 29.3 15 PDB header:chaperone, hydrolase
Chain: B: PDB Molecule:chaperone protein htpg;
PDBTitle: crystal structure of the middle domain of htpg, the e. coli2 hsp90
112c3s5bB_



not modelled 28.7 13 PDB header:hydrolase
Chain: B: PDB Molecule:endonuclease g;
PDBTitle: crystal structure of ced-3 protease suppressor-6 (cps-6) from2 caenorhabditis elegans
113c4a5bA_



not modelled 28.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside-triphosphatase 2;
PDBTitle: crystal structure of the c258s/c268s variant of toxoplasma gondii2 nucleoside triphosphate diphosphohydrolase 1 (ntpdase1)
114d2uzga1



not modelled 28.1 13 Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
115d1g8ta_



not modelled 28.0 6 Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:DNA/RNA non-specific endonuclease
116d2nllb_



not modelled 27.8 24 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
117c2vf7B_



not modelled 27.7 26 PDB header:dna-binding protein
Chain: B: PDB Molecule:excinuclease abc, subunit a.;
PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
118c3eeaB_



not modelled 27.7 8 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:gaf domain/hd domain protein;
PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens
119d2hrca1



not modelled 27.3 18 Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
120c3hjcA_



not modelled 27.2 15 PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 83-1;
PDBTitle: crystal structure of the carboxy-terminal domain of hsp90 from2 leishmania major, lmjf33.0312

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