Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ80TT8
DateWed Jul 10 14:12:26 BST 2013
Unique Job ID3c2b219eb02043cd
SequenceMARALRGPGP ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:92.256 Y:64.321 Z:73.643
Model (left) based on template c4kblA_
Top template information
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arih1;
PDBTitle: structure of hhari, a ring-ibr-ring ubiquitin ligase: autoinhibition2 of an ariadne-family e3 and insights into ligation mechanism
Confidence and coverage
Confidence:100.0% Coverage: 21%
386 residues ( 21% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
1425 residues ( 76%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MARALRGPGPRSSLDQHVAAVLATVQISSLDTNLQLSGLCALSQAVEEVTERDHPLVRPD
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   .........70.........80.........90.........100.........110.........120
Sequence  RPLREKLVKTLVDLLTNQVGEKMVVVMALRLLYLLMTKHEWRPLFAREGGIYAVLICMQE
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   .........130.........140.........150.........160.........170.........180
Sequence  YKTSVLVQQAGLAALKMLAIANSSDVPTFIPSRDSIQPLFDTQMTREIFASIDSATRPGS
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   .........190.........200.........210.........220.........230.........240
Sequence  ESLLLSVPAAVVLMLNTEGCSSAVRNGLLLLNLLLCNHHTLGDQIITQELRDTLFRHSGI
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   .........250.........260.........270.........280.........290.........300
Sequence  APGTEPMPTTRTILTMLLSRYSEPRGSPERAVLETPSTQGQDGSPESLIRSLVGDLSAEL
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   .........310.........320.........330.........340.........350.........360
Sequence  FLDLERVLCHEGSPPAAVRPLLRRLQQETQPFLLLLRTLDAPGPNRTLLLTILRVMTRLL
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   .........370.........380.........390.........400.........410.........420
Sequence  DHPETMVLPWHEVLEPCLNCLNGPSSDSEVVQEVTCFLHRLALMQKDYAVVLCCLGGKEA
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   .........430.........440.........450.........460.........470.........480
Sequence  LSKVLDKHSTQLLLASELRHLVAECEKYSQLCSNLTSSILAGCIQMVLGQIEDHRRTYKP
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   .........490.........500.........510.........520.........530.........540
Sequence  ITIPFFDVFLRHLCQGSSVEVKEDRCWEKVEVSSNPHRASKLTDRNPKTYWESNGSTGSH
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   .........550.........560.........570.........580.........590.........600
Sequence  SITLHMHRGVLIRQLTLLVASEDSSYMPARVVVFGGDNVGCISTELNTVNVMPSASRVTL
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   .........610.........620.........630.........640.........650.........660
Sequence  LENLTRFWPIIQIRIKRCQQGGIDTRVRGVEVLGPKPTFWPLFREQLCRRTCLFYTIRAQ
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   .........670.........680.........690.........700.........710.........720
Sequence  AWSRDIAEDRQRLLQLYPRLNRVLRHEQNFADRFLPDDEAAQALGKTCWEALVSPLVQNI
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   .........730.........740.........750.........760.........770.........780
Sequence  TSPDAGGVSSLGWLLDQYLEHRESTRSRQGPAASFASQVRRLCHLLVHVEAPPGPSPEPS
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   .........790.........800.........810.........820.........830.........840
Sequence  SQPLSKNSKGQDGSPTPAPTPVCPSTSLRNLTQCWLSVVQGQVSRFLAAAWRASDFVPRY
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   .........850.........860.........870.........880.........890.........900
Sequence  CSLYQRLQSAGSELFGPRAAFTLALRSGFSGALLQQSFLTAAHISEQFARHIDQQIHGGL
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   .........910.........920.........930.........940.........950.........960
Sequence  LGGAAGVGMLGRLQRHLEPIMVLSGLELATTFEHFYQHYMADRLLSLGSSWLEGAVLEQI
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  GPCFPNRLPQLMLQSLHTSEELQHRFHLFQLQQLDRQLLEQGDQEEWRPEKVEEDDEGQE
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  TGRELFTDPGPAISVLVLSPRCWPVSPLCYLHHPRKHLQAELCDALERFSSFYSHSQNCP
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  VLDIGPHRRLQWTWLGRAELQLGDQTLHVSLNTVQMWLLFNQSEEVSVETLLRNSDLSPE
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  LLHQALLPLTSDNGPLTLEETQDYPQGGVLRLREPRSQTHEEFLWLIPPQTYLSVEKDEG
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  RTLEQKRNLLSCLLVRILKAHREKGLHIDQLVCLVLEAWQKGPDPPGRLGNAAAVGVACS
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  STDVLSCILHLLGQGYVERRDDRPQVLMYATPEPMGPCRGQADVPFCGNKNTETSRPSPE
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  AVVALASLQLPAGRTMSPQEVEGLMEQTVRQVQETLNLEPDVAQHLLAHSHWGTEQLLQS
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   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  YSDDPEPLLLAAGLRVPQAQVVPTRPDQCPVCVTPLGPHDDSPSLCCLHCCCKSCWNEYL
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   .........1450.........1460.........1470.........1480.........1490.........1500
Sequence  TTRIEQNFVLNCTCPIADCPAQPTGAFIRNIVSSPEVISKYEKALLRGYVESCSNLTWCT
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   .........1510.........1520.........1530.........1540.........1550.........1560
Sequence  NPQGCDRILCRQGLGSGTTCSKCGWASCFSCSFPEAHYPASCGHMSQWVDDGGYYDGMSV
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   .........1570.........1580.........1590.........1600.........1610.........1620
Sequence  EAQSKHLAKLISKRCPSCQAPIEKNEGCLHMTCARCNHGFCWRCLKSWKPSHKDYYNCSA
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   .........1630.........1640.........1650.........1660.........1670.........1680
Sequence  MVSKAARQEKRFQDYNERCTFHHQAREFAVNLRNQASAIQEVPPPKSFTFLQDACRALEQ
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   .........1690.........1700.........1710.........1720.........1730.........1740
Sequence  ARKVLAYACVYSFYSQDTEYMDVVEQQTENLELHTNALQILLEETLLRCRDLASSLRFLR
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   .........1750.........1760.........1770.........1780.........1790.........1800
Sequence  ADCLSTGTELLRRIQERLLAILQHSTQDFRVGLQSPSVETREVKGSNVPSDQPQGSSGLE
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   .........1810.........1820.........1830.........1840.........1850.........1860
Sequence  VEDEEEEEEEEEEEEEEEEEDVPEWQHEFDEELDNDSFSYDEESENLDRETFFFGDEDED
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   .....
Sequence  DESYD
Secondary structure 




SS confidence 




Disorder  ?????
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Confidence Key
High(9)                    Low (0)
?Disordered ( 31%)
Alpha helix ( 54%)
Beta strand ( 7%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 4kbl chain A

3D model

Region: 1335 - 1763
Aligned: 386
Modelled: 393
Confidence: 100.0%
Identity: 28%
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arih1;
PDBTitle: structure of hhari, a ring-ibr-ring ubiquitin ligase: autoinhibition2 of an ariadne-family e3 and insights into ligation mechanism

Phyre2

PDB 2hye chain C

3D model

Region: 642 - 1291
Aligned: 515
Modelled: 555
Confidence: 100.0%
Identity: 21%
PDB header:protein binding
Chain: C: PDB Molecule:cullin-4a;
PDBTitle: crystal structure of the ddb1-cul4a-rbx1-sv5v complex

Phyre2

PDB 4a0l chain H

3D model

Region: 642 - 1291
Aligned: 508
Modelled: 563
Confidence: 100.0%
Identity: 21%
PDB header:ligase/dna-binding protein/dna
Chain: H: PDB Molecule:cullin-4b;
PDBTitle: structure of ddb1-ddb2-cul4b-rbx1 bound to a 12 bp abasic2 site containing dna-duplex

Phyre2

PDB 1u6g chain A

3D model

Region: 643 - 1291
Aligned: 512
Modelled: 555
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: A: PDB Molecule:cullin homolog 1;
PDBTitle: crystal structure of the cand1-cul1-roc1 complex

Phyre2

PDB 4k95 chain G

3D model

Region: 1404 - 1617
Aligned: 195
Modelled: 200
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase parkin;
PDBTitle: crystal structure of parkin

Phyre2

PDB 3dpl chain C

3D model

Region: 882 - 1291
Aligned: 346
Modelled: 363
Confidence: 99.9%
Identity: 18%
PDB header:ligase
Chain: C: PDB Molecule:cullin-5;
PDBTitle: structural insights into nedd8 activation of cullin-ring2 ligases: conformational control of conjugation.

Phyre2

PDB 1ldk chain B

3D model

Region: 880 - 1291
Aligned: 345
Modelled: 365
Confidence: 99.9%
Identity: 21%
PDB header:ligase
Chain: B: PDB Molecule:cullin homolog;
PDBTitle: structure of the cul1-rbx1-skp1-f boxskp2 scf ubiquitin2 ligase complex

Phyre2

PDB 1gqp chain A

3D model

Region: 499 - 635
Aligned: 130
Modelled: 137
Confidence: 99.9%
Identity: 23%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: APC10-like

Phyre2

PDB 1gqp chain B

3D model

Region: 476 - 635
Aligned: 159
Modelled: 160
Confidence: 99.9%
Identity: 19%
PDB header:cell cycle
Chain: B: PDB Molecule:doc1/apc10;
PDBTitle: apc10/doc1 subunit of s. cerevisiae

Phyre2

PDB 1ldj chain A domain 3

3D model

Region: 881 - 1165
Aligned: 234
Modelled: 252
Confidence: 99.8%
Identity: 24%
Fold: Cullin homology domain
Superfamily: Cullin homology domain
Family: Cullin homology domain

Phyre2

PDB 1jhj chain A

3D model

Region: 501 - 635
Aligned: 133
Modelled: 135
Confidence: 99.7%
Identity: 26%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: APC10-like

Phyre2

PDB 2m48 chain A

3D model

Region: 1489 - 1616
Aligned: 126
Modelled: 128
Confidence: 99.7%
Identity: 24%
PDB header:ligase
Chain: A: PDB Molecule:sd01679p;
PDBTitle: solution structure of ibr-ring2 tandem domain from parkin

Phyre2

PDB 2hye chain C domain 3

3D model

Region: 885 - 1160
Aligned: 227
Modelled: 244
Confidence: 99.7%
Identity: 24%
Fold: Cullin homology domain
Superfamily: Cullin homology domain
Family: Cullin homology domain

Phyre2

PDB 1wd2 chain A

3D model

Region: 1567 - 1623
Aligned: 57
Modelled: 57
Confidence: 99.5%
Identity: 40%
Fold: RING/U-box
Superfamily: RING/U-box
Family: RING finger domain, C3HC4

Phyre2

PDB 1wim chain A

3D model

Region: 1403 - 1493
Aligned: 90
Modelled: 91
Confidence: 99.1%
Identity: 21%
Fold: RING/U-box
Superfamily: RING/U-box
Family: RING finger domain, C3HC4

Phyre2

PDB 2ct7 chain A domain 1

3D model

Region: 1571 - 1623
Aligned: 52
Modelled: 53
Confidence: 98.8%
Identity: 25%
Fold: RING/U-box
Superfamily: RING/U-box
Family: IBR domain

Phyre2

PDB 3o2p chain E

3D model

Region: 1196 - 1291
Aligned: 79
Modelled: 82
Confidence: 98.4%
Identity: 25%
PDB header:ligase, cell cycle
Chain: E: PDB Molecule:cell division control protein 53;
PDBTitle: a dual e3 mechanism for rub1 ligation to cdc53: dcn1(p)-cdc53(whb)

Phyre2

PDB 1ldj chain A domain 1

3D model

Region: 1196 - 1291
Aligned: 80
Modelled: 82
Confidence: 98.4%
Identity: 26%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: SCF ubiquitin ligase complex WHB domain

Phyre2

PDB 1iuy chain A

3D model

Region: 1196 - 1291
Aligned: 80
Modelled: 81
Confidence: 98.2%
Identity: 23%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: SCF ubiquitin ligase complex WHB domain

Phyre2

PDB 2hye chain C domain 1

3D model

Region: 1196 - 1291
Aligned: 78
Modelled: 80
Confidence: 98.0%
Identity: 27%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: SCF ubiquitin ligase complex WHB domain

Phyre2

PDB 3l6y chain A

3D model

Region: 59 - 473
Aligned: 333
Modelled: 333
Confidence: 92.6%
Identity: 15%
PDB header:cell adhesion
Chain: A: PDB Molecule:catenin delta-1;
PDBTitle: crystal structure of p120 catenin in complex with e-cadherin

Phyre2

PDB 4gmn chain A

3D model

Region: 26 - 95
Aligned: 61
Modelled: 61
Confidence: 56.5%
Identity: 23%
PDB header:rna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structural basis of rpl5 recognition by syo1

Phyre2
1

c4kblA_
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c2hyeC_
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c4a0lH_
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c1u6gA_
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c4k95G_
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c3dplC_
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c1ldkB_
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d1gqpa_
9

c1gqpB_
10

d1ldja3
11

d1jhja_
12

c2m48A_
13

d2hyec3
14

d1wd2a_
15

d1wima_
16

d2ct7a1
17

c3o2pE_
18

d1ldja1
19

d1iuya_
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d2hyec1
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c3l6yA_
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c4gmnA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4kblA_



100.0 28 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arih1;
PDBTitle: structure of hhari, a ring-ibr-ring ubiquitin ligase: autoinhibition2 of an ariadne-family e3 and insights into ligation mechanism
2c2hyeC_



100.0 21 PDB header:protein binding
Chain: C: PDB Molecule:cullin-4a;
PDBTitle: crystal structure of the ddb1-cul4a-rbx1-sv5v complex
3c4a0lH_



100.0 21 PDB header:ligase/dna-binding protein/dna
Chain: H: PDB Molecule:cullin-4b;
PDBTitle: structure of ddb1-ddb2-cul4b-rbx1 bound to a 12 bp abasic2 site containing dna-duplex
4c1u6gA_



100.0 22 PDB header:ligase
Chain: A: PDB Molecule:cullin homolog 1;
PDBTitle: crystal structure of the cand1-cul1-roc1 complex
5c4k95G_



100.0 24 PDB header:ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase parkin;
PDBTitle: crystal structure of parkin
6c3dplC_



99.9 18 PDB header:ligase
Chain: C: PDB Molecule:cullin-5;
PDBTitle: structural insights into nedd8 activation of cullin-ring2 ligases: conformational control of conjugation.
7c1ldkB_



99.9 21 PDB header:ligase
Chain: B: PDB Molecule:cullin homolog;
PDBTitle: structure of the cul1-rbx1-skp1-f boxskp2 scf ubiquitin2 ligase complex
8d1gqpa_



99.9 23 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:APC10-like
9c1gqpB_



99.9 19 PDB header:cell cycle
Chain: B: PDB Molecule:doc1/apc10;
PDBTitle: apc10/doc1 subunit of s. cerevisiae
10d1ldja3



99.8 24 Fold:Cullin homology domain
Superfamily:Cullin homology domain
Family:Cullin homology domain
11d1jhja_



99.7 26 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:APC10-like
12c2m48A_



99.7 24 PDB header:ligase
Chain: A: PDB Molecule:sd01679p;
PDBTitle: solution structure of ibr-ring2 tandem domain from parkin
13d2hyec3



99.7 24 Fold:Cullin homology domain
Superfamily:Cullin homology domain
Family:Cullin homology domain
14d1wd2a_



99.5 40 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
15d1wima_



99.1 21 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
16d2ct7a1



98.8 25 Fold:RING/U-box
Superfamily:RING/U-box
Family:IBR domain
17c3o2pE_



98.4 25 PDB header:ligase, cell cycle
Chain: E: PDB Molecule:cell division control protein 53;
PDBTitle: a dual e3 mechanism for rub1 ligation to cdc53: dcn1(p)-cdc53(whb)
18d1ldja1



98.4 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:SCF ubiquitin ligase complex WHB domain
19d1iuya_



98.2 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:SCF ubiquitin ligase complex WHB domain
20d2hyec1



98.0 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:SCF ubiquitin ligase complex WHB domain
21c2j1aA_



not modelled 98.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase;
PDBTitle: structure of cbm32 from clostridium perfringens beta-n-2 acetylhexosaminidase gh84c in complex with galactose
22c2jmoA_



not modelled 97.9 21 PDB header:ligase
Chain: A: PDB Molecule:parkin;
PDBTitle: ibr domain of human parkin
23d1w8oa2



not modelled 97.8 20 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Galactose-binding domain
24c2kd7A_



not modelled 97.2 17 PDB header:cell adhesion
Chain: A: PDB Molecule:putative chitobiase;
PDBTitle: solution nmr structure of f5/8 type c-terminal domain of a2 putative chitobiase from bacteroides thetaiotaomicron.3 northeast structural genomics consortium target btr324b
25c3eypB_



not modelled 96.7 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of putative alpha-l-fucosidase from bacteroides2 thetaiotaomicron
26c4a44A_



not modelled 96.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylglucosaminidase family protein;
PDBTitle: cpgh89cbm32-5, from clostridium perfringens, in complex with the tn2 antigen
27d1tvga_



not modelled 96.6 15 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:APC10-like
28d1e4ua_



not modelled 96.5 32 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
29c2jdaA_



not modelled 96.4 11 PDB header:sugar-binding protein
Chain: A: PDB Molecule:yecbm32;
PDBTitle: structure of a pectin binding carbohydrate binding module2 determined in an monoclinic crystal form.
30c4a42B_



not modelled 96.4 20 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-n-acetylglucosaminidase family protein;
PDBTitle: cpgh89cbm32-6 produced by clostridium perfringens
31c3htkC_



not modelled 96.2 24 PDB header:recombination/replication/ligase
Chain: C: PDB Molecule:e3 sumo-protein ligase mms21;
PDBTitle: crystal structure of mms21 and smc5 complex
32c3hnmD_



not modelled 96.1 13 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative chitobiase;
PDBTitle: crystal structure of protein bt_411 (putative chitobiase,2 fragment 298-461) from bacteroides thetaiotaomicron,3 northeast structural genomics consortium target btr319d
33c3l11A_



not modelled 96.1 19 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf168;
PDBTitle: crystal structure of the ring domain of rnf168
34c2ct2A_



not modelled 95.6 29 PDB header:ligase
Chain: A: PDB Molecule:tripartite motif protein 32;
PDBTitle: solution structure of the ring domain of the tripartite2 motif protein 32
35c3ztgA_



not modelled 95.6 21 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rbbp6;
PDBTitle: solution structure of the ring finger-like domain of2 retinoblastoma binding protein-6 (rbbp6)
36c2vz1A_



not modelled 95.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:galactose oxidase;
PDBTitle: premat-galactose oxidase
37d1k3ia2



not modelled 95.3 15 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Galactose-binding domain
38c2yc2A_



not modelled 95.3 16 PDB header:transport protein
Chain: A: PDB Molecule:intraflagellar transport protein 25;
PDBTitle: intraflagellar transport complex 25-27 from chlamydomonas
39c2yu4A_



not modelled 95.2 14 PDB header:apoptosis
Chain: A: PDB Molecule:e3 sumo-protein ligase nse2;
PDBTitle: solution structure of the sp-ring domain in non-smc element2 2 homolog (mms21, s. cerevisiae)
40c2csyA_



not modelled 95.2 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:zinc finger protein 183-like 1;
PDBTitle: solution structure of the ring domain of the zinc finger2 protein 183-like 1
41c3lrqB_



not modelled 94.9 27 PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim37;
PDBTitle: crystal structure of the u-box domain of human ubiquitin-2 protein ligase (e3), northeast structural genomics3 consortium target hr4604d.
42c4a6oB_



not modelled 94.9 17 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-n-acetylglucosaminidase family protein;
PDBTitle: cpgh89cbm32-4, produced by clostridium perfringens, in2 complex with glcnac-alpha-1,4-galactose
43c2d8tA_



not modelled 94.8 19 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger protein 146;
PDBTitle: solution structure of the ring domain of the human ring2 finger protein 146
44c2ecwA_



not modelled 94.8 22 PDB header:apoptosis
Chain: A: PDB Molecule:tripartite motif-containing protein 30;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain tripartite motif protein 30
45c4epoL_



not modelled 94.7 29 PDB header:protein binding/ligase
Chain: L: PDB Molecule:e3 ubiquitin-protein ligase rnf8;
PDBTitle: crystal structure of rnf8 bound to the ubc13/mms2 heterodimer
46d2hyec2



not modelled 94.6 15 Fold:alpha-alpha superhelix
Superfamily:Cullin repeat-like
Family:Cullin repeat
47c2yurA_



not modelled 94.6 24 PDB header:protein binding
Chain: A: PDB Molecule:retinoblastoma-binding protein 6;
PDBTitle: solution structure of the ring finger of human2 retinoblastoma-binding protein 6
48c2berA_



not modelled 94.5 20 PDB header:hydrolase
Chain: A: PDB Molecule:bacterial sialidase;
PDBTitle: y370g active site mutant of the sialidase from2 micromonospora viridifaciens in complex with beta-neu5ac3 (sialic acid).
49c2v72A_



not modelled 94.3 12 PDB header:sugar-binding protein
Chain: A: PDB Molecule:exo-alpha-sialidase;
PDBTitle: the structure of the family 32 cbm from c. perfringens nanj2 in complex with galactose
50c2egpA_



not modelled 94.3 25 PDB header:antiviral protein
Chain: A: PDB Molecule:tripartite motif-containing protein 34;
PDBTitle: solution structure of the ring-finger domain from human2 tripartite motif protein 34
51c2j22A_



not modelled 94.2 14 PDB header:carbohydrate-binding protein
Chain: A: PDB Molecule:fucolectin-related protein;
PDBTitle: structure of a streptococcus pneumoniae fucose binding2 module, spx-3
52c2cklB_



not modelled 94.2 26 PDB header:transcription
Chain: B: PDB Molecule:ubiquitin ligase protein ring2;
PDBTitle: ring1b-bmi1 e3 catalytic domain structure
53c2kizA_



not modelled 94.2 25 PDB header:metal binding protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arkadia;
PDBTitle: solution structure of arkadia ring-h2 finger domain
54c2y43B_



not modelled 94.1 23 PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rad18;
PDBTitle: rad18 ubiquitin ligase ring domain structure
55c2ecvA_



not modelled 94.0 26 PDB header:ligase
Chain: A: PDB Molecule:tripartite motif-containing protein 5;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of tripartite motif-containing protein 5
56c2ep4A_



not modelled 93.8 29 PDB header:protein binding
Chain: A: PDB Molecule:ring finger protein 24;
PDBTitle: solution structure of ring finger from human ring finger2 protein 24
57c2l0bA_



not modelled 93.8 23 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase praja-1;
PDBTitle: solution nmr structure of zinc finger domain of e3 ubiquitin-protein2 ligase praja-1 from homo sapiens, northeast structural genomics3 consortium (nesg) target hr4710b
58c2ectA_



not modelled 93.7 29 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger protein 126;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of ring finger protein 126
59d1jm7a_



not modelled 93.6 20 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
60c2yslA_



not modelled 93.6 25 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif-containing protein 31;
PDBTitle: solution structure of the ring domain (1-66) from2 tripartite motif-containing protein 31
61c2ecmA_



not modelled 93.3 25 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger and chy zinc finger domain-
PDBTitle: solution structure of the ring domain of the ring finger2 and chy zinc finger domain-containing protein 1 from mus3 musculus
62d1rmda2



not modelled 93.3 20 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
63c2w1sB_



not modelled 93.0 12 PDB header:hydrolase
Chain: B: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: unique ligand binding specificity of a family 322 carbohydrate-binding module from the mu toxin produced by3 clostridium perfringens
64c3l6yA_



92.6 15 PDB header:cell adhesion
Chain: A: PDB Molecule:catenin delta-1;
PDBTitle: crystal structure of p120 catenin in complex with e-cadherin
65c2cklA_



not modelled 92.6 30 PDB header:transcription
Chain: A: PDB Molecule:polycomb group ring finger protein 4;
PDBTitle: ring1b-bmi1 e3 catalytic domain structure
66d1ldja2



not modelled 92.6 18 Fold:alpha-alpha superhelix
Superfamily:Cullin repeat-like
Family:Cullin repeat
67c2ecjA_



not modelled 92.4 21 PDB header:metal binding protein
Chain: A: PDB Molecule:tripartite motif-containing protein 39;
PDBTitle: solution structure of the ring domain of the human2 tripartite motif-containing protein 39
68c2j1sB_



not modelled 92.4 12 PDB header:carbohydrate-binding protein
Chain: B: PDB Molecule:fucolectin-related protein;
PDBTitle: structure of a streptococcus pneumoniae fucose binding2 module in complex with fucose
69d1chca_



not modelled 92.4 31 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
70c2ea6A_



not modelled 92.3 30 PDB header:transcription
Chain: A: PDB Molecule:ring finger protein 4;
PDBTitle: solution structure of the ring domain of the human ring2 finger protein 4
71d1v87a_



not modelled 92.2 24 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
72c1z6uA_



not modelled 92.2 19 PDB header:ligase
Chain: A: PDB Molecule:np95-like ring finger protein isoform b;
PDBTitle: np95-like ring finger protein isoform b [homo sapiens]
73c2djbA_



not modelled 92.0 38 PDB header:gene regulation
Chain: A: PDB Molecule:polycomb group ring finger protein 6;
PDBTitle: solution structure of the ring domain of the human polycomb2 group ring finger protein 6
74d1jm7b_



not modelled 91.9 21 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
75c1x4jA_



not modelled 91.9 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ring finger protein 38;
PDBTitle: solution structure of ring finger in ring finger protein 38
76c2eciA_



not modelled 91.8 24 PDB header:metal binding protein
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein
77c2ecyA_



not modelled 91.7 22 PDB header:apoptosis
Chain: A: PDB Molecule:tnf receptor-associated factor 3;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger)" domain of tnf receptor-associated factor 3
78c3fl2A_



not modelled 91.5 22 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of the ring domain of the e3 ubiquitin-2 protein ligase uhrf1
79c2h0dB_



not modelled 91.5 21 PDB header:metal binding protein/ligase
Chain: B: PDB Molecule:ubiquitin ligase protein ring2;
PDBTitle: structure of a bmi-1-ring1b polycomb group ubiquitin ligase complex
80c3knvA_



not modelled 91.3 19 PDB header:signaling protein
Chain: A: PDB Molecule:tnf receptor-associated factor 2;
PDBTitle: crystal structure of the ring and first zinc finger domains2 of traf2
81c2f42A_



not modelled 90.9 12 PDB header:chaperone
Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1;
PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein
82c3mo4B_



not modelled 90.8 25 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-1,3/4-fucosidase;
PDBTitle: the crystal structure of an alpha-(1-3,4)-fucosidase from2 bifidobacterium longum subsp. infantis atcc 15697
83c2ls6A_



not modelled 90.8 13 PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: solution nmr structure of a non-canonical galactose-binding cbm32 from2 clostridium perfringens
84c3hcsA_



not modelled 90.5 26 PDB header:signaling protein
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: crystal structure of the n-terminal domain of traf6
85c2y9iB_



not modelled 90.5 15 PDB header:sugar binding protein
Chain: B: PDB Molecule:carbohydrate binding family 6;
PDBTitle: cbm62 in complex with xyloglucan oligosaccharide
86d1g25a_



not modelled 90.4 28 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
87c2y38A_



not modelled 89.7 23 PDB header:structural protein
Chain: A: PDB Molecule:laminin subunit alpha-5;
PDBTitle: laminin alpha5 chain n-terminal fragment
88c1rmdA_



not modelled 89.6 21 PDB header:dna-binding protein
Chain: A: PDB Molecule:rag1;
PDBTitle: rag1 dimerization domain
89c2d8sA_



not modelled 89.5 19 PDB header:metal binding protein
Chain: A: PDB Molecule:cellular modulator of immune recognition;
PDBTitle: solution structure of the ring domain of the human cellular2 modulator of immune recognition protein
90d2c2vv1



not modelled 89.4 13 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
91d1ur6b_



not modelled 89.3 33 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
92d1fbva4



not modelled 88.6 25 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
93c2ecnA_



not modelled 88.2 27 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger protein 141;
PDBTitle: solution structure of the ring domain of the human ring2 finger protein 141
94d1v92a_



not modelled 86.7 23 Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
95c2xeuA_



not modelled 86.6 33 PDB header:transcription
Chain: A: PDB Molecule:ring finger protein 4;
PDBTitle: ring domain
96d3dplr1



not modelled 85.6 24 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
97c2jrjA_



not modelled 85.1 24 PDB header:ligase
Chain: A: PDB Molecule:ring finger and chy zinc finger domain
PDBTitle: solution structure of the human pirh2 ring-h2 domain.2 northeast structural genomics consortium target ht2b
98c3nw0A_



not modelled 85.0 14 PDB header:metal binding protein
Chain: A: PDB Molecule:non-structural maintenance of chromosomes element 1
PDBTitle: crystal structure of mageg1 and nse1 complex
99c2jmdA_



not modelled 83.6 26 PDB header:ligase
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: solution structure of the ring domain of human traf6
100c3hctA_



not modelled 83.6 21 PDB header:signaling protein/ligase
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: crystal structure of traf6 in complex with ubc13 in the p12 space group
101d1bora_



not modelled 83.0 30 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
102d1vyxa_



not modelled 82.8 27 Fold:RING/U-box
Superfamily:RING/U-box
Family:Variant RING domain
103d1t1ha_



not modelled 82.3 16 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
104c3le0A_



not modelled 82.1 10 PDB header:blood clotting
Chain: A: PDB Molecule:platelet aggregation factor sm-hpaf;
PDBTitle: lectin domain of lectinolysin complexed with glycerol
105c2wzkA_



not modelled 80.9 23 PDB header:protein binding
Chain: A: PDB Molecule:cullin-5;
PDBTitle: structure of the cul5 n-terminal domain at 2.05a resolution.
106d1xm9a1



not modelled 80.8 12 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Plakophilin 1 helical region
107d1iyma_



not modelled 80.5 32 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
108c1dgsB_



not modelled 79.6 27 PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
109d2c2la2



not modelled 79.4 10 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
110c2ct0A_



not modelled 78.9 18 PDB header:gene regulation
Chain: A: PDB Molecule:non-smc element 1 homolog;
PDBTitle: solution structure of the ring domain of the non-smc2 element 1 protein
111c2kreA_



not modelled 78.8 17 PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b;
PDBTitle: solution structure of e4b/ufd2a u-box domain
112c2z6gA_



not modelled 78.6 14 PDB header:cell adhesion
Chain: A: PDB Molecule:b-catenin;
PDBTitle: crystal structure of a full-length zebrafish beta-catenin
113c4aqsA_



not modelled 78.2 21 PDB header:cell adhesion
Chain: A: PDB Molecule:laminin subunit beta-1;
PDBTitle: laminin beta1 ln-le1-4 structure
114d1zbdb_



not modelled 77.6 16 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
115c3zyiB_



not modelled 76.4 26 PDB header:cell adhesion
Chain: B: PDB Molecule:netrin-g2;
PDBTitle: netring2 in complex with ngl2
116c3t7uA_



not modelled 75.2 15 PDB header:cell adhesion
Chain: A: PDB Molecule:adenomatous polyposis coli protein;
PDBTitle: a new crytal structure of apc-arm
117c4ap4A_



not modelled 74.7 26 PDB header:ligase/signalling protein
Chain: A: PDB Molecule:e3 ubiquitin ligase rnf4;
PDBTitle: rnf4 - ubch5a - ubiquitin heterotrimeric complex
118c2eclA_



not modelled 74.0 22 PDB header:metal binding protein
Chain: A: PDB Molecule:ring-box protein 2;
PDBTitle: solution structure of the ring domain of the human ring-box2 protein 2
119c2hdpB_



not modelled 73.4 12 PDB header:ligase
Chain: B: PDB Molecule:ubiquitin-protein ligase e3 mdm2;
PDBTitle: solution structure of hdm2 ring finger domain
120c3tbdA_



not modelled 72.8 26 PDB header:cell adhesion
Chain: A: PDB Molecule:netrin-g2;
PDBTitle: crystal structure of domain vi and le1 of human netrin-g2

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