Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP70399
DateWed Jul 10 14:00:13 BST 2013
Unique Job ID53e0aadb1527396b
SequenceMDPTGSQLDS ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.923 Y:58.520 Z:49.279
Model (left) based on template c1kzyD_
Top template information
PDB header:dna binding protein, protein binding
Chain: D: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: crystal structure of the 53bp1 brct region complexed to2 tumor suppressor p53
Confidence and coverage
Confidence:100.0% Coverage: 12%
232 residues ( 12% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
402 residues ( 21%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 90% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDPTGSQLDSDFSQQDTPCLIIEDSQPESQVLEEDAGSHFSVLSRHLPNLQMHKENPVLD
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   .........70.........80.........90.........100.........110.........120
Sequence  IVSNPEQSAVEQGDSNSSFNEHLKEKKASDPVESSHLGTSGSISQVIERLPQPNRTSSAL
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   .........130.........140.........150.........160.........170.........180
Sequence  AVTVEAASLPEEEKEEEELEEKEGVGANAPGADSLAAEDSASSQLGFGVLELSQSQDVEE
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   .........190.........200.........210.........220.........230.........240
Sequence  HTVPYDVNQEHLQLVTTNSGSSPLSDVDASTAIKCEEQPTEDIAMIEQPSKDIPVTVQPG
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   .........250.........260.........270.........280.........290.........300
Sequence  KGIHVVEEQNLPLVRSEDRPSSPQVSVAAVETKEQVPARELLEEGPQVQPSSEPEVSSTQ
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   .........310.........320.........330.........340.........350.........360
Sequence  EDLFDQSSKTASDGCSTPSREEGGCSPVSTPATTLQLLQLSGQKPLVQESLSTNSSDLVA
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   .........370.........380.........390.........400.........410.........420
Sequence  PSPDAFRSTPFIVPSSPTEQGGRKDEPMDMSVIPAGGEPFQKLHDDEAMETEKPLLPSQP
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   .........430.........440.........450.........460.........470.........480
Sequence  TVSPQASTPVSRSTPVFTPGSLPIPSQPEFSHDIFIPSPSLEEPSDDVKKGGGLHSSSLT
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   .........490.........500.........510.........520.........530.........540
Sequence  VECSKTSESEPKNFTDDLGLSMTGDSCKLMLSTSEYSQSSKMESLGSPRTEEDRENTQID
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   .........550.........560.........570.........580.........590.........600
Sequence  DTEPLSPVSNSKLPADSENVLVTPSQDDQVEMSQNVDKAKEDETEDRGDCKGREDAVAED
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   .........610.........620.........630.........640.........650.........660
Sequence  VCIDLTCDSGSQAVPSPATRSEALSSVLDQEEAMDTKEHHPEEGFSGSEVEEVPETPCGS
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   .........670.........680.........690.........700.........710.........720
Sequence  HREEPKEEAMESIPLHLSLTETQSEALCLQKEAPKEECPEAMEVETSVISIDSPQKLQVL
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   .........730.........740.........750.........760.........770.........780
Sequence  DQELEHKDPDTWEEATSEDSSVVIVDVKEPSPRADVSCEPLEEVEKCSDSQSWEGVAPEE
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   .........790.........800.........810.........820.........830.........840
Sequence  EPCAENRLDTPEEKRIECDGDSKAETTEKDAVTEDSPQPPLPSVRDEPVRPDQETQQPQV
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   .........850.........860.........870.........880.........890.........900
Sequence  QEKESPVTVDAEVADDKQLGPEGACQQLEKAPACASQSFCESSSETPFHFTLPKEGDIIP
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   .........910.........920.........930.........940.........950.........960
Sequence  PLTGATPPLIGHLKLEPKRHSTPIGISNYPESTIATSDVTSESMVEINDPLLGNEKGDSE
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  SAPEMDGKLSLKMKLVSPETEASEESLQFSLEKPTTAERKNGSTAIAEPVASLQKPVPVF
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  GCIYEAQQEKEAQSEAPPSAPDRANLLHFPSAQEEDKERPDVTPKLRQSEQPVKPVGPVM
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  DDAAPEDSASPVSQQRASQEPFSPAEDVMETDLLEGLAANQDRPSKMLMDRPTQSNIGIQ
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  TVDHSLCAPETVSAATQTVKSVCEQGTSTAEQNSGKQDATVQTERGSGEKPASAPVDDTE
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  SLHSQGEEEFEMPQPPHGHVLHRHMRTIREVRTLVTRVITDVYYVDGTEVERKVTEETEE
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  PIVECQECETEVSPSQTGGSSGDLGDISSFSSKASSSHHTSSGTSLSAIHSSGSSGRGAG
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  PLKGKASGTEAADFALPSSRGGPGKLSPRKGISQTGAPVCEEDGDAGLGIRQGGKAPVTP
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   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  RGRGRRGRPPSRTTGTRETVVSGPLGVEDISPSMSPDDKSFTRIMPRVPDSTKRTDASSS
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   .........1450.........1460.........1470.........1480.........1490.........1500
Sequence  TLRRSDSPEIPFQAATGSSDGLDSSSSGNSFVGLRVVAKWSSNGYFYSGKITRDVGAGKY
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   .........1510.........1520.........1530.........1540.........1550.........1560
Sequence  KLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIEKE
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   .........1570.........1580.........1590.........1600.........1610.........1620
Sequence  GQRKWYKRMAVILSLEQGNRLREQYGLGPYEAVTPLTKAADISLDNLVEGKRKRRSNISS
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   .........1630.........1640.........1650.........1660.........1670.........1680
Sequence  PVTPTAASSSSTTPTRKATESPRASTGVPSGKRKLPTSEEERSPAKRGRKSATVKPGTVG
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   .........1690.........1700.........1710.........1720.........1730.........1740
Sequence  AAEFVSPCETGDNIGEPSVLEEPRGPLPLNKTLFLGYAFLLTMATTSDKLASRSKLLDGP
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   .........1750.........1760.........1770.........1780.........1790.........1800
Sequence  TGSSEEEEEFLEIPPFNKQYTECQLRAGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKY
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   .........1810.........1820.........1830.........1840.........1850.........1860
Sequence  FLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSLEEQRILDWQPRENPFQNLKVL
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   .........1870.........1880.........1890.........1900.........1910.........1920
Sequence  LVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAE
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   .........1930.........1940.........1950.......
Sequence  ALQLPVVSQEWVIQCLIVGERIGFKQHPKYKHDYVSH
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Confidence Key
High(9)                    Low (0)
?Disordered ( 90%)
Alpha helix ( 6%)
Beta strand ( 4%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1kzy chain D

3D model

Region: 1699 - 1957
Aligned: 232
Modelled: 232
Confidence: 100.0%
Identity: 99%
PDB header:dna binding protein, protein binding
Chain: D: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: crystal structure of the 53bp1 brct region complexed to2 tumor suppressor p53

Phyre2

PDB 1kzy chain C domain 2

3D model

Region: 1852 - 1957
Aligned: 106
Modelled: 106
Confidence: 100.0%
Identity: 100%
Fold: BRCT domain
Superfamily: BRCT domain
Family: 53BP1

Phyre2

PDB 2vxc chain A

3D model

Region: 1713 - 1943
Aligned: 184
Modelled: 192
Confidence: 100.0%
Identity: 21%
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9;
PDBTitle: structure of the crb2-brct2 domain complex with2 phosphopeptide.

Phyre2

PDB 1kzy chain C domain 1

3D model

Region: 1699 - 1851
Aligned: 126
Modelled: 126
Confidence: 100.0%
Identity: 98%
Fold: BRCT domain
Superfamily: BRCT domain
Family: 53BP1

Phyre2

PDB 1xni chain I

3D model

Region: 1470 - 1587
Aligned: 118
Modelled: 118
Confidence: 99.9%
Identity: 100%
PDB header:cell cycle
Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: tandem tudor domain of 53bp1

Phyre2

PDB 1ssf chain A

3D model

Region: 1469 - 1591
Aligned: 123
Modelled: 123
Confidence: 99.9%
Identity: 100%
PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)

Phyre2

PDB 3l40 chain A

3D model

Region: 1756 - 1945
Aligned: 182
Modelled: 190
Confidence: 99.9%
Identity: 16%
PDB header:cell cycle
Chain: A: PDB Molecule:brct-containing protein 1;
PDBTitle: crystal structure of s. pombe brc1 brct5-brct6 domains

Phyre2

PDB 3al3 chain A

3D model

Region: 1715 - 1953
Aligned: 192
Modelled: 210
Confidence: 99.9%
Identity: 20%
PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of topbp1 brct7/8-bach1 peptide complex

Phyre2

PDB 2azm chain B

3D model

Region: 1756 - 1947
Aligned: 175
Modelled: 192
Confidence: 99.8%
Identity: 21%
PDB header:cell cycle
Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1;
PDBTitle: crystal structure of the mdc1 brct repeat in complex with2 the histone tail of gamma-h2ax

Phyre2

PDB 1z56 chain C

3D model

Region: 1711 - 1945
Aligned: 197
Modelled: 213
Confidence: 99.8%
Identity: 14%
PDB header:ligase
Chain: C: PDB Molecule:dna ligase iv;
PDBTitle: co-crystal structure of lif1p-lig4p

Phyre2

PDB 2r1z chain B

3D model

Region: 1758 - 1945
Aligned: 179
Modelled: 179
Confidence: 99.8%
Identity: 12%
PDB header:antitumor protein
Chain: B: PDB Molecule:brca1-associated ring domain protein 1;
PDBTitle: crystal structure of the bard1 brct repeat

Phyre2

PDB 1y98 chain A

3D model

Region: 1717 - 1947
Aligned: 193
Modelled: 202
Confidence: 99.8%
Identity: 20%
PDB header:antitumor protein
Chain: A: PDB Molecule:breast cancer type 1 susceptibility protein;
PDBTitle: structure of the brct repeats of brca1 bound to a ctip2 phosphopeptide.

Phyre2

PDB 3t1n chain A

3D model

Region: 1758 - 1945
Aligned: 165
Modelled: 188
Confidence: 99.8%
Identity: 15%
PDB header:cell cycle/peptide
Chain: A: PDB Molecule:microcephalin;
PDBTitle: structure of human microcephalin (mcph1) tandem brct domains in2 complex with a cdc27 phosphopeptide

Phyre2

PDB 2xnk chain A

3D model

Region: 1702 - 1945
Aligned: 187
Modelled: 215
Confidence: 99.7%
Identity: 13%
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: structure and function of the rad9-binding region of the dna damage2 checkpoint adaptor topbp1

Phyre2

PDB 1l0b chain A

3D model

Region: 1753 - 1947
Aligned: 168
Modelled: 175
Confidence: 99.7%
Identity: 18%
PDB header:unknown function
Chain: A: PDB Molecule:brca1;
PDBTitle: crystal structure of rat brca1 tandem-brct region

Phyre2

PDB 3ueo chain B

3D model

Region: 1712 - 1945
Aligned: 179
Modelled: 190
Confidence: 99.7%
Identity: 18%
PDB header:peptide binding protein
Chain: B: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of topbp1 brct4/5 domains in complex with a phospho-2 peptide

Phyre2

PDB 3ii6 chain Y

3D model

Region: 1711 - 1947
Aligned: 193
Modelled: 209
Confidence: 99.7%
Identity: 19%
PDB header:ligase/dna binding protein
Chain: Y: PDB Molecule:dna ligase 4;
PDBTitle: structure of human xrcc4 in complex with the tandem brct2 domains of dna ligaseiv.

Phyre2

PDB 2g3r chain A domain 2

3D model

Region: 1523 - 1588
Aligned: 66
Modelled: 66
Confidence: 99.7%
Identity: 100%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: Tudor domain

Phyre2

PDB 2g3r chain A domain 1

3D model

Region: 1470 - 1522
Aligned: 53
Modelled: 53
Confidence: 99.7%
Identity: 100%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: Tudor domain

Phyre2

PDB 3t7k chain B

3D model

Region: 1758 - 1955
Aligned: 185
Modelled: 198
Confidence: 99.4%
Identity: 13%
PDB header:protein binding
Chain: B: PDB Molecule:regulator of ty1 transposition protein 107;
PDBTitle: complex structure of rtt107p and phosphorylated histone h2a

Phyre2

PDB 2fhd chain A

3D model

Region: 1466 - 1675
Aligned: 134
Modelled: 130
Confidence: 99.3%
Identity: 16%
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9/crb2;
PDBTitle: crystal structure of crb2 tandem tudor domains

Phyre2
1

c1kzyD_
2

d1kzyc2
3

c2vxcA_
4

d1kzyc1
5

c1xniI_
6

c1ssfA_
7

c3l40A_
8

c3al3A_
9

c2azmB_
10

c1z56C_
11

c2r1zB_
12

c1y98A_
13

c3t1nA_
14

c2xnkA_
15

c1l0bA_
16

c3ueoB_
17

c3ii6Y_
18

d2g3ra2
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d2g3ra1
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c3t7kB_
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c2fhdA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1kzyD_



100.0 99 PDB header:dna binding protein, protein binding
Chain: D: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: crystal structure of the 53bp1 brct region complexed to2 tumor suppressor p53
2d1kzyc2



100.0 100 Fold:BRCT domain
Superfamily:BRCT domain
Family:53BP1
3c2vxcA_



100.0 21 PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9;
PDBTitle: structure of the crb2-brct2 domain complex with2 phosphopeptide.
4d1kzyc1



100.0 98 Fold:BRCT domain
Superfamily:BRCT domain
Family:53BP1
5c1xniI_



99.9 100 PDB header:cell cycle
Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: tandem tudor domain of 53bp1
6c1ssfA_



99.9 100 PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
7c3l40A_



99.9 16 PDB header:cell cycle
Chain: A: PDB Molecule:brct-containing protein 1;
PDBTitle: crystal structure of s. pombe brc1 brct5-brct6 domains
8c3al3A_



99.9 20 PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of topbp1 brct7/8-bach1 peptide complex
9c2azmB_



99.8 21 PDB header:cell cycle
Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1;
PDBTitle: crystal structure of the mdc1 brct repeat in complex with2 the histone tail of gamma-h2ax
10c1z56C_



99.8 14 PDB header:ligase
Chain: C: PDB Molecule:dna ligase iv;
PDBTitle: co-crystal structure of lif1p-lig4p
11c2r1zB_



99.8 12 PDB header:antitumor protein
Chain: B: PDB Molecule:brca1-associated ring domain protein 1;
PDBTitle: crystal structure of the bard1 brct repeat
12c1y98A_



99.8 20 PDB header:antitumor protein
Chain: A: PDB Molecule:breast cancer type 1 susceptibility protein;
PDBTitle: structure of the brct repeats of brca1 bound to a ctip2 phosphopeptide.
13c3t1nA_



99.8 15 PDB header:cell cycle/peptide
Chain: A: PDB Molecule:microcephalin;
PDBTitle: structure of human microcephalin (mcph1) tandem brct domains in2 complex with a cdc27 phosphopeptide
14c2xnkA_



99.7 13 PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: structure and function of the rad9-binding region of the dna damage2 checkpoint adaptor topbp1
15c1l0bA_



99.7 18 PDB header:unknown function
Chain: A: PDB Molecule:brca1;
PDBTitle: crystal structure of rat brca1 tandem-brct region
16c3ueoB_



99.7 18 PDB header:peptide binding protein
Chain: B: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of topbp1 brct4/5 domains in complex with a phospho-2 peptide
17c3ii6Y_



99.7 19 PDB header:ligase/dna binding protein
Chain: Y: PDB Molecule:dna ligase 4;
PDBTitle: structure of human xrcc4 in complex with the tandem brct2 domains of dna ligaseiv.
18d2g3ra2



99.7 100 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
19d2g3ra1



99.7 100 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
20c3t7kB_



99.4 13 PDB header:protein binding
Chain: B: PDB Molecule:regulator of ty1 transposition protein 107;
PDBTitle: complex structure of rtt107p and phosphorylated histone h2a
21c2d8mA_



not modelled 99.4 24 PDB header:dna binding protein
Chain: A: PDB Molecule:dna-repair protein xrcc1;
PDBTitle: solution structure of the first brct domain of dna-repair2 protein xrcc1
22c2fhdA_



99.3 16 PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9/crb2;
PDBTitle: crystal structure of crb2 tandem tudor domains
23d1t15a2



not modelled 99.3 17 Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
24d1wf6a_



not modelled 99.2 15 Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA topoisomerase II binding protein 1, TopBP1
25c2qqsB_



not modelled 99.2 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation
PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide
26c2e2wA_



not modelled 99.1 15 PDB header:ligase
Chain: A: PDB Molecule:dna ligase 4;
PDBTitle: solution structure of the first brct domain of human dna2 ligase iv
27c4id3B_



not modelled 99.0 16 PDB header:protein binding
Chain: B: PDB Molecule:dna repair protein rev1;
PDBTitle: crystal structure of the brct domain of s. cerevisiae rev1
28d1l0ba1



not modelled 99.0 28 Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
29c3dlmA_



not modelled 99.0 21 PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1;
PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1
30c2xdpA_



not modelled 99.0 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 4c;
PDBTitle: crystal structure of the tudor domain of human jmjd2c
31d1cdza_



not modelled 98.9 17 Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA-repair protein XRCC1
32c2ebwA_



not modelled 98.9 18 PDB header:transferase
Chain: A: PDB Molecule:dna repair protein rev1;
PDBTitle: solution structure of the brct domain from human dna repair2 protein rev1
33c2couA_



not modelled 98.8 20 PDB header:cell cycle
Chain: A: PDB Molecule:ect2 protein;
PDBTitle: solution structure of the second brct domain of epithelial2 cell transforming 2
34c3l3eA_



not modelled 98.8 17 PDB header:cell cycle
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of the sixth brct domain of human topbp1
35d1t15a1



not modelled 98.8 24 Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
36c2ep8A_



not modelled 98.8 22 PDB header:cell cycle
Chain: A: PDB Molecule:pescadillo homolog 1;
PDBTitle: solution structure of the brct domain from human pescadillo2 homolog 1
37c3ktfB_



not modelled 98.8 14 PDB header:cell cycle
Chain: B: PDB Molecule:microcephalin;
PDBTitle: structure of the n-terminal brct domain of human2 microcephalin (mcph1).
38c2cokA_



not modelled 98.7 17 PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1;
PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1
39c2jw5A_



not modelled 98.6 13 PDB header:protein binding
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: polymerase lambda brct domain
40c2equA_



not modelled 98.6 28 PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
41c3ef1A_



not modelled 98.6 20 PDB header:hydrolase
Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase;
PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd phosphatase
42c3qiiA_



not modelled 98.5 31 PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
43d1l0ba2



not modelled 98.5 22 Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
44c2ldmA_



not modelled 98.5 31 PDB header:transcription/protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of human phf20 tudor2 domain bound to a p53 segment2 containing a dimethyllysine analog p53k370me2
45c3ef0A_



not modelled 98.5 22 PDB header:hydrolase
Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase;
PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd phosphatase
46c3p8dB_



not modelled 98.4 31 PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
47c2l42A_



not modelled 98.1 20 PDB header:protein binding
Chain: A: PDB Molecule:dna-binding protein rap1;
PDBTitle: the solution structure of rap1 brct domain from saccharomyces2 cerevisiae
48c2ebuA_



not modelled 98.0 16 PDB header:replication
Chain: A: PDB Molecule:replication factor c subunit 1;
PDBTitle: solution structure of the brct domain from human2 replication factor c large subunit 1
49c2dunA_



not modelled 97.9 16 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: solution structure of brct domain of dna polymerase mu
50c2coeA_



not modelled 97.9 10 PDB header:transferase
Chain: A: PDB Molecule:deoxynucleotidyltransferase, terminal variant;
PDBTitle: solution structure of brct domain of terminal2 deoxynucleotidyltransferase
51d1in1a_



not modelled 97.8 19 Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA ligase
52c2e5qA_



not modelled 97.7 39 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 19;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens]
53c2eqjA_



not modelled 97.6 34 PDB header:transcription
Chain: A: PDB Molecule:metal-response element-binding transcription
PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2
54c2e5pA_



not modelled 97.6 34 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein)
55d1l7ba_



not modelled 97.6 17 Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA ligase
56c2m0oA_



not modelled 97.1 29 PDB header:peptide binding protein
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: the solution structure of human phf1 in complex with h3k36me3
57c2xk0A_



not modelled 97.0 27 PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
58c4a4fA_



not modelled 96.6 25 PDB header:rna binding protein
Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30;
PDBTitle: solution structure of spf30 tudor domain in complex with2 symmetrically dimethylated arginine
59c2d9tA_



not modelled 96.1 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: solution structure of the tudor domain of tudor domain2 containing protein 3 from mouse
60c1g5vA_



not modelled 96.1 26 PDB header:translation
Chain: A: PDB Molecule:survival motor neuron protein 1;
PDBTitle: solution structure of the tudor domain of the human smn2 protein
61d1mhna_



not modelled 95.8 23 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
62d2d9ta1



not modelled 95.4 13 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
63d2qqra1



not modelled 95.3 37 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
64d2diga1



not modelled 94.6 25 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
65c2digA_



not modelled 94.6 25 PDB header:dna binding protein
Chain: A: PDB Molecule:lamin-b receptor;
PDBTitle: solusion structure of the todor domain of human lamin-b2 receptor
66c3pnwX_



not modelled 94.2 16 PDB header:protein binding/immune system
Chain: X: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: crystal structure of the tudor domain of human tdrd3 in complex with2 an anti-tdrd3 fab
67d1qo0d_



not modelled 94.1 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Positive regulator of the amidase operon AmiR
68c2lcdA_



not modelled 94.1 23 PDB header:transcription
Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a;
PDBTitle: solution structure of rbbp1 tudor domain
69d2qqra2



not modelled 94.1 25 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
70c3mmnA_



not modelled 94.1 22 PDB header:transferase
Chain: A: PDB Molecule:histidine kinase homolog;
PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
71d2qqsa2



not modelled 93.8 24 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
72c3metB_



not modelled 93.3 19 PDB header:transcription
Chain: B: PDB Molecule:saga-associated factor 29 homolog;
PDBTitle: crystal structure of sgf29 in complex with h3k4me2
73d1wgsa_



not modelled 92.3 10 Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo barrel domain
74c4ii1A_



not modelled 92.3 33 PDB header:transcription
Chain: A: PDB Molecule:zinc finger ccch-type with g patch domain-containing
PDBTitle: crystal structure of the zinc finger of zgpat
75d2diqa1



not modelled 91.9 30 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
76c4dadA_



not modelled 91.6 20 PDB header:signaling protein, signal transduction
Chain: A: PDB Molecule:putative pilus assembly-related protein;
PDBTitle: crystal structure of a putative pilus assembly-related protein2 (bpss2195) from burkholderia pseudomallei k96243 at 2.50 a resolution3 (psi community target, shapiro l.)
77c1ny5A_



not modelled 91.0 24 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
78d2hqxa1



not modelled 90.9 22 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
79c2hqxB_



not modelled 90.9 22 PDB header:transcription
Chain: B: PDB Molecule:p100 co-activator tudor domain;
PDBTitle: crystal structure of human p100 tudor domain conserved2 region
80c2rjnA_



not modelled 90.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
81c2lpmA_



not modelled 90.6 21 PDB header:transcription regulator
Chain: A: PDB Molecule:two-component response regulator;
PDBTitle: chemical shift and structure assignments for sma0114
82c3mp6A_



not modelled 90.1 25 PDB header:histone binding protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga-
PDBTitle: complex structure of sgf29 and dimethylated h3k4
83c2ayxA_



not modelled 89.6 16 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
84d1kgsa2



not modelled 89.2 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
85c3t8yA_



not modelled 88.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
86c3to5A_



not modelled 88.3 25 PDB header:signaling protein
Chain: A: PDB Molecule:chey homolog;
PDBTitle: high resolution structure of chey3 from vibrio cholerae
87c2wacA_



not modelled 88.0 22 PDB header:splicing
Chain: A: PDB Molecule:cg7008-pa;
PDBTitle: extended tudor domain of drosophila melanogaster tudor-sn (2 p100)
88c3f6cB_



not modelled 87.9 13 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
89d1jbea_



not modelled 87.2 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
90c3hv2B_



not modelled 87.0 18 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
91c3snkA_



not modelled 86.7 18 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
92c2zwmA_



not modelled 85.9 18 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
93c4gnsA_



not modelled 85.5 22 PDB header:transport protein
Chain: A: PDB Molecule:chitin biosynthesis protein chs5;
PDBTitle: crystal structure of the chs5-chs6 exomer cargo adaptor complex
94d2b4aa1



not modelled 85.3 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
95d1s8na_



not modelled 85.3 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
96c2eqkA_



not modelled 85.1 20 PDB header:transcription
Chain: A: PDB Molecule:tudor domain-containing protein 4;
PDBTitle: solution structure of the tudor domain of tudor domain-2 containing protein 4
97d1dcfa_



not modelled 84.5 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Receiver domain of the ethylene receptor
98c2rdmB_



not modelled 84.3 21 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
99c4b9xA_



not modelled 84.2 20 PDB header:replication
Chain: A: PDB Molecule:tudor domain-containing protein 1;
PDBTitle: structure of extended tudor domain td3 from mouse tdrd1
100c2j48A_



not modelled 83.8 16 PDB header:transferase
Chain: A: PDB Molecule:two-component sensor kinase;
PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein.
101c3grcD_



not modelled 83.8 20 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
102c4b9wB_



not modelled 83.6 21 PDB header:replication
Chain: B: PDB Molecule:tudor domain-containing protein 1;
PDBTitle: structure of extended tudor domain td3 from mouse tdrd1 in2 complex with mili peptide containing dimethylarginine 45.
103d1zgza1



not modelled 83.5 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
104c1w25B_



not modelled 83.4 20 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
105c2hqrA_



not modelled 83.1 15 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
106d2ayxa1



not modelled 83.1 18 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
107c1zn2A_



not modelled 83.0 19 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
108c3c3wB_



not modelled 83.0 23 PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
109d1dbwa_



not modelled 83.0 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
110c3nthA_



not modelled 82.9 21 PDB header:transcription
Chain: A: PDB Molecule:maternal protein tudor;
PDBTitle: crystal structure of tudor and aubergine [r13(me2s)] complex
111c4e7pA_



not modelled 82.6 16 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of receiver domain of putative narl family response2 regulator spr1814 from streptococcus pneumoniae in the presence of3 the phosphoryl analog beryllofluoride
112d1ny5a1



not modelled 82.5 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
113c3bdlA_



not modelled 82.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:staphylococcal nuclease domain-containing
PDBTitle: crystal structure of a truncated human tudor-sn
114c2o4xA_



not modelled 81.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:staphylococcal nuclease domain-containing
PDBTitle: crystal structure of human p100 tudor domain
115c3r0jA_



not modelled 81.5 25 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
116c3b2nA_



not modelled 81.1 16 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
117c3hdgE_



not modelled 80.9 25 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
118d2a9pa1



not modelled 80.4 17 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
119d1heya_



not modelled 80.0 18 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
120c1kgsA_



not modelled 79.8 26 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima

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