Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA2A5N8
DateWed Jul 10 14:39:59 BST 2013
Unique Job IDea015dd284e7c5af
SequenceMEGHTDMEIL ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.578 Y:60.867 Z:70.177
Model (left) based on template c1oz3C_
Top template information
PDB header:transcription
Chain: C: PDB Molecule:lethal(3)malignant brain tumor-like protein;
PDBTitle: crystal structure of 3-mbt repeats of lethal (3) malignant brain tumor2 (native-i) at 1.85 angstrom
Confidence and coverage
Confidence:100.0% Coverage: 38%
313 residues ( 38% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
530 residues ( 64%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 51% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MEGHTDMEILRTVKGSSTGEVNVHLVARDSAGPHPQLPTTAFIIPTNAATLGLPSTALDV
Secondary structure 
SS confidence 
Disorder  ???????
?
?
?????????
????
?????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PYPREPVHVGALERVAGSEPVTATILPQLSTGTGTNSTVRLLDWTGVSAPLPGSGMRFRI
Secondary structure 
SS confidence 
Disorder  ?????
??????????????????????????????????
?????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  NEYAPLNMIGVERPRSPEQRHEGGMARRDAGIQHPDVHQDRQDITSLEPPVDASSCKCQA
Secondary structure 
SS confidence 
Disorder 
???
?
????????????????????????????????
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  CGPQQSSGLDVGSSGDRCSQPFQKRSVIVENSGCTIASELLKPMKKRKHKEYQSPSEESE
Secondary structure 
SS confidence 
Disorder 
?
?????
???????????????????????????????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  PEAVKQGEGKDAEREPTPSTPENEEWSRSQLVSSEKKDGWSWESYLEEQKAVTAPVSLFQ
Secondary structure 
SS confidence 
Disorder  ?????????????????????????????????????
???
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  DSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNAN
Secondary structure 
SS confidence 
Disorder  ?????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  SPDIHPAGWFEKTGHKLQLPKGYKEEEFSWSQYLRSTKAQAAPKHLFVSQSHSTPPVGFQ
Secondary structure 
SS confidence 
Disorder 
?
??
?
?
?
?????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  VGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDDWGDTYDYWCDPSSPYIHPVGWCQKQ
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  GKPLTPPQDYPDPDSFCWEKYLEETGTSAVPNWAFKVRPPHSFLVNMKLEAVDRRNPALI
Secondary structure 
SS confidence 
Disorder  ?????????????
?
??
????????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  RVASVEDVEDHRIKLHFDGWSHNYDFWIDADHPDIHPAGWCSKTGHPLEPPLRPRESSSV
Secondary structure 
SS confidence 
Disorder 
?
?
??????????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  SPGGCPPLSHRSPPHTKTSKYNFHHRKCPTPGCDGSGHVTGKFTAHHCLSGCPLAEKNQS
Secondary structure 
SS confidence 
Disorder  ??
?????????????????????????????????????????????????
??????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  RLKAELSDSETAARKKNPSNLSPRKKPRHQGRIGRPPKYRKIPEEDLQALPPSVVHQSLF
Secondary structure 
SS confidence 
Disorder  ???????????????????????????????????????????????????????????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  MSTLPTHADRPLSVCWEQHCKLLPGVAGISASTVSKWTIEEVFGFVQTLTGSEDQARLFK
Secondary structure 
SS confidence 
Disorder  ??
????????????
????
?
Disorder confidence 
 
   .........790.........800.........810.........820......
Sequence  DEMIDGEAFLLLTQADIVKIMSVKLGPALKIYNAILMFKNTDDAFK
Secondary structure 
SS confidence 
Disorder 
??
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 51%)
Alpha helix ( 16%)
Beta strand ( 15%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1oz3 chain C

3D model

Region: 280 - 592
Aligned: 313
Modelled: 313
Confidence: 100.0%
Identity: 94%
PDB header:transcription
Chain: C: PDB Molecule:lethal(3)malignant brain tumor-like protein;
PDBTitle: crystal structure of 3-mbt repeats of lethal (3) malignant brain tumor2 (native-i) at 1.85 angstrom

Phyre2

PDB 3ut1 chain A

3D model

Region: 279 - 593
Aligned: 313
Modelled: 315
Confidence: 100.0%
Identity: 65%
PDB header:transcription
Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like protein 3;
PDBTitle: crystal structure of the 3-mbt repeat domain of l3mbtl3

Phyre2

PDB 3h6z chain A

3D model

Region: 275 - 593
Aligned: 312
Modelled: 319
Confidence: 100.0%
Identity: 36%
PDB header:transcription
Chain: A: PDB Molecule:polycomb protein sfmbt;
PDBTitle: crystal structure of the four mbt repeats of drosophila melanogaster2 sfmbt in complex with peptide rhr (me)k vlr

Phyre2

PDB 3cey chain A

3D model

Region: 273 - 591
Aligned: 308
Modelled: 319
Confidence: 100.0%
Identity: 38%
PDB header:transcription regulator
Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like 2 protein;
PDBTitle: crystal structure of l3mbtl2

Phyre2

PDB 3feo chain B

3D model

Region: 280 - 591
Aligned: 306
Modelled: 312
Confidence: 100.0%
Identity: 36%
PDB header:metal binding protein
Chain: B: PDB Molecule:mbt domain-containing protein 1;
PDBTitle: the crystal structure of mbtd1

Phyre2

PDB 2r58 chain A

3D model

Region: 279 - 489
Aligned: 209
Modelled: 211
Confidence: 100.0%
Identity: 41%
PDB header:transcription
Chain: A: PDB Molecule:polycomb protein scm;
PDBTitle: crystal structure of the two mbt repeats from sex-comb on midleg (scm)2 in complex with di-methyl lysine

Phyre2

PDB 2vyt chain A

3D model

Region: 277 - 488
Aligned: 210
Modelled: 212
Confidence: 100.0%
Identity: 42%
PDB header:transcription
Chain: A: PDB Molecule:sex comb on midleg-like protein 2;
PDBTitle: the mbt repeats of human scml2 bind to peptides containing2 mono methylated lysine.

Phyre2

PDB 1wjs chain A

3D model

Region: 306 - 419
Aligned: 114
Modelled: 114
Confidence: 100.0%
Identity: 69%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: MBT repeat

Phyre2

PDB 1oz2 chain A domain 1

3D model

Region: 278 - 387
Aligned: 110
Modelled: 110
Confidence: 100.0%
Identity: 96%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: MBT repeat

Phyre2

PDB 1oz2 chain A domain 2

3D model

Region: 280 - 385
Aligned: 105
Modelled: 106
Confidence: 100.0%
Identity: 37%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: MBT repeat

Phyre2

PDB 1oi1 chain A domain 1

3D model

Region: 280 - 384
Aligned: 103
Modelled: 105
Confidence: 100.0%
Identity: 46%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: MBT repeat

Phyre2

PDB 1oz2 chain A domain 3

3D model

Region: 280 - 389
Aligned: 105
Modelled: 105
Confidence: 100.0%
Identity: 43%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: MBT repeat

Phyre2

PDB 1oi1 chain A domain 2

3D model

Region: 281 - 382
Aligned: 101
Modelled: 102
Confidence: 100.0%
Identity: 39%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: MBT repeat

Phyre2

PDB 1wjr chain A

3D model

Region: 310 - 422
Aligned: 110
Modelled: 113
Confidence: 100.0%
Identity: 27%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: MBT repeat

Phyre2

PDB 1wjq chain A

3D model

Region: 415 - 511
Aligned: 97
Modelled: 97
Confidence: 100.0%
Identity: 46%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: MBT repeat

Phyre2

PDB 2eqm chain A

3D model

Region: 407 - 485
Aligned: 79
Modelled: 79
Confidence: 99.9%
Identity: 24%
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens]

Phyre2

PDB 3q1j chain A

3D model

Region: 410 - 474
Aligned: 65
Modelled: 65
Confidence: 99.8%
Identity: 31%
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20

Phyre2

PDB 1pk1 chain B

3D model

Region: 751 - 818
Aligned: 68
Modelled: 68
Confidence: 99.8%
Identity: 38%
PDB header:transcription repression
Chain: B: PDB Molecule:sex comb on midleg cg9495-pa;
PDBTitle: hetero sam domain structure of ph and scm.

Phyre2

PDB 1pk3 chain A domain 1

3D model

Region: 757 - 818
Aligned: 62
Modelled: 62
Confidence: 99.7%
Identity: 40%
Fold: SAM domain-like
Superfamily: SAM/Pointed domain
Family: SAM (sterile alpha motif) domain

Phyre2

PDB 1pk1 chain A

3D model

Region: 753 - 819
Aligned: 67
Modelled: 67
Confidence: 99.7%
Identity: 36%
PDB header:transcription repression
Chain: A: PDB Molecule:polyhomeotic-proximal chromatin protein;
PDBTitle: hetero sam domain structure of ph and scm.

Phyre2

PDB 1pk1 chain C domain 1

3D model

Region: 754 - 818
Aligned: 65
Modelled: 62
Confidence: 99.7%
Identity: 35%
Fold: SAM domain-like
Superfamily: SAM/Pointed domain
Family: SAM (sterile alpha motif) domain

Phyre2

PDB 1kw4 chain A

3D model

Region: 750 - 819
Aligned: 70
Modelled: 67
Confidence: 99.6%
Identity: 34%
Fold: SAM domain-like
Superfamily: SAM/Pointed domain
Family: SAM (sterile alpha motif) domain

Phyre2

PDB 2e8o chain A

3D model

Region: 728 - 820
Aligned: 92
Modelled: 92
Confidence: 99.4%
Identity: 14%
PDB header:signaling protein
Chain: A: PDB Molecule:sam domain and hd domain-containing protein 1;
PDBTitle: solution structure of the n-terminal sam-domain of the sam2 domain and hd domain containing protein 1 (dendritic cell-3 derived ifng-induced protein) (dcip) (monocyte protein 5)4 (mop-5)

Phyre2

PDB 2jyd chain A

3D model

Region: 619 - 662
Aligned: 44
Modelled: 44
Confidence: 97.6%
Identity: 52%
PDB header:metal binding protein
Chain: A: PDB Molecule:f5 domain of myelin transcription factor 1;
PDBTitle: structure of the fifth zinc finger of myelin transcription2 factor 1

Phyre2

PDB 2cs8 chain A

3D model

Region: 598 - 670
Aligned: 72
Modelled: 72
Confidence: 97.6%
Identity: 38%
PDB header:transcription
Chain: A: PDB Molecule:kiaa0535 protein;
PDBTitle: solution structure of tandem repeat of the fifth and sixth2 zinc-finger c2hc domains from human st18

Phyre2

PDB 1pxe chain A

3D model

Region: 625 - 671
Aligned: 47
Modelled: 47
Confidence: 97.6%
Identity: 45%
PDB header:metal binding protein
Chain: A: PDB Molecule:neural zinc finger transcription factor 1;
PDBTitle: solution structure of a cchhc domain of neural zinc finger2 factor-1

Phyre2

PDB 2l8e chain A

3D model

Region: 158 - 203
Aligned: 46
Modelled: 46
Confidence: 95.1%
Identity: 20%
PDB header:dna binding protein
Chain: A: PDB Molecule:polyhomeotic-like protein 1;
PDBTitle: solution nmr structure of fcs domain of human polyhomeotic homolog 12 (hph1)

Phyre2

PDB 2w0t chain A

3D model

Region: 173 - 212
Aligned: 40
Modelled: 40
Confidence: 94.0%
Identity: 13%
PDB header:transcription
Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like 2 protein;
PDBTitle: solution structure of the fcs zinc finger domain of human2 lmbl2

Phyre2
1
c1oz3C_
2
c3ut1A_
3
c3h6zA_
4
c3ceyA_
5
c3feoB_
6
c2r58A_
7
c2vytA_
8
d1wjsa_
9
d1oz2a1
10
d1oz2a2
11
d1oi1a1
12
d1oz2a3
13
d1oi1a2
14
d1wjra_
15
d1wjqa_
16
c2eqmA_
17
c3q1jA_
18
c1pk1B_
19
d1pk3a1
20
c1pk1A_
21
d1pk1c1
22
d1kw4a_
23
24
25
c2e8oA_
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
c2jydA_
62
c2cs8A_
63
64
c1pxeA_
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
c2l8eA_
89
90
c2w0tA_
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1oz3C_
100.0 94 PDB header:transcription
Chain: C: PDB Molecule:lethal(3)malignant brain tumor-like protein;
PDBTitle: crystal structure of 3-mbt repeats of lethal (3) malignant brain tumor2 (native-i) at 1.85 angstrom
2c3ut1A_
100.0 65 PDB header:transcription
Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like protein 3;
PDBTitle: crystal structure of the 3-mbt repeat domain of l3mbtl3
3c3h6zA_
100.0 36 PDB header:transcription
Chain: A: PDB Molecule:polycomb protein sfmbt;
PDBTitle: crystal structure of the four mbt repeats of drosophila melanogaster2 sfmbt in complex with peptide rhr (me)k vlr
4c3ceyA_
100.0 38 PDB header:transcription regulator
Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like 2 protein;
PDBTitle: crystal structure of l3mbtl2
5c3feoB_
100.0 36 PDB header:metal binding protein
Chain: B: PDB Molecule:mbt domain-containing protein 1;
PDBTitle: the crystal structure of mbtd1
6c2r58A_
100.0 41 PDB header:transcription
Chain: A: PDB Molecule:polycomb protein scm;
PDBTitle: crystal structure of the two mbt repeats from sex-comb on midleg (scm)2 in complex with di-methyl lysine
7c2vytA_
100.0 42 PDB header:transcription
Chain: A: PDB Molecule:sex comb on midleg-like protein 2;
PDBTitle: the mbt repeats of human scml2 bind to peptides containing2 mono methylated lysine.
8d1wjsa_
100.0 69 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
9d1oz2a1
100.0 96 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
10d1oz2a2
100.0 37 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
11d1oi1a1
100.0 46 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
12d1oz2a3
100.0 43 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
13d1oi1a2
100.0 39 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
14d1wjra_
100.0 27 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
15d1wjqa_
100.0 46 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
16c2eqmA_
99.9 24 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens]
17c3q1jA_
99.8 31 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20
18c1pk1B_
99.8 38 PDB header:transcription repression
Chain: B: PDB Molecule:sex comb on midleg cg9495-pa;
PDBTitle: hetero sam domain structure of ph and scm.
19d1pk3a1
99.7 40 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
20c1pk1A_
99.7 36 PDB header:transcription repression
Chain: A: PDB Molecule:polyhomeotic-proximal chromatin protein;
PDBTitle: hetero sam domain structure of ph and scm.
21d1pk1c1
99.7 35 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
22d1kw4a_
99.6 34 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
23d1uqva_
not modelled 99.6 15 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
24c2dkzA_
not modelled 99.5 23 PDB header:signaling protein
Chain: A: PDB Molecule:hypothetical protein loc64762;
PDBTitle: solution structure of the sam_pnt-domain of the2 hypothetical protein loc64762
25c2e8oA_
99.4 14 PDB header:signaling protein
Chain: A: PDB Molecule:sam domain and hd domain-containing protein 1;
PDBTitle: solution structure of the n-terminal sam-domain of the sam2 domain and hd domain containing protein 1 (dendritic cell-3 derived ifng-induced protein) (dcip) (monocyte protein 5)4 (mop-5)
26c2eanA_
not modelled 99.1 21 PDB header:signaling protein
Chain: A: PDB Molecule:connector enhancer of kinase suppressor of ras 2;
PDBTitle: solution structure of the n-terminal sam-domain of human2 kiaa0902 protein (connector enhancer of kinase suppressor3 of ras 2)
27c3bs5A_
not modelled 99.1 21 PDB header:signaling protein/membrane protein
Chain: A: PDB Molecule:protein aveugle;
PDBTitle: crystal structure of hcnk2-sam/dhyp-sam complex
28c3bq7A_
not modelled 99.1 27 PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase delta;
PDBTitle: sam domain of diacylglycerol kinase delta1 (e35g)
29d1wwva1
not modelled 99.1 18 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
30c2gleA_
not modelled 99.0 15 PDB header:protein binding
Chain: A: PDB Molecule:neurabin-1;
PDBTitle: solution structure of neurabin sam domain
31c1v85A_
not modelled 99.0 17 PDB header:apoptosis
Chain: A: PDB Molecule:similar to ring finger protein 36;
PDBTitle: sterile alpha motif (sam) domain of mouse bifunctional2 apoptosis regulator
32c2k60A_
not modelled 99.0 21 PDB header:signaling protein
Chain: A: PDB Molecule:protein (stromal interaction molecule 1);
PDBTitle: nmr structure of calcium-loaded stim1 ef-sam
33d2f3na1
not modelled 98.9 20 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
34c3k1rB_
not modelled 98.9 34 PDB header:structural protein
Chain: B: PDB Molecule:usher syndrome type-1g protein;
PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans
35c3bs7A_
not modelled 98.9 23 PDB header:signaling protein
Chain: A: PDB Molecule:protein aveugle;
PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle
36c2l5yA_
not modelled 98.8 18 PDB header:signaling protein
Chain: A: PDB Molecule:stromal interaction molecule 2;
PDBTitle: nmr structure of calcium-loaded stim2 ef-sam.
37c2eaoA_
not modelled 98.6 13 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:ephrin type-b receptor 1;
PDBTitle: solution structure of the c-terminal sam-domain of mouse2 ephrin type-b receptor 1 precursor (ec 2.7.1.112)
38c3tadB_
not modelled 98.6 14 PDB header:protein binding
Chain: B: PDB Molecule:liprin-alpha-2;
PDBTitle: crystal structure of the liprin-alpha/liprin-beta complex
39c3h8mB_
not modelled 98.3 19 PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 7;
PDBTitle: sam domain of human ephrin type-a receptor 7 (epha7)
40c2fe9A_
not modelled 98.2 13 PDB header:rna binding protein
Chain: A: PDB Molecule:protein vts1;
PDBTitle: solution structure of the vts1 sam domain in the presence2 of rna
41d1b4fa_
not modelled 98.2 12 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
42c1ow5A_
not modelled 98.2 21 PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase ste11;
PDBTitle: nmr structure of the saccharomyces cerevisiae sam (sterile2 alpha motif) domain
43d1ow5a_
not modelled 98.2 21 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
44d1oxja1
not modelled 98.1 20 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
45d1x40a1
not modelled 98.1 13 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
46d1sxea_
not modelled 98.0 15 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
47c2eseA_
not modelled 98.0 11 PDB header:protein/rna complex
Chain: A: PDB Molecule:vts1p;
PDBTitle: structure of the sam domain of vts1p in complex with rna
48c2b6gA_
not modelled 98.0 11 PDB header:rna binding protein
Chain: A: PDB Molecule:vts1p;
PDBTitle: rna recognition by the vts1 sam domain
49c2eamA_
not modelled 98.0 16 PDB header:signaling protein
Chain: A: PDB Molecule:putative 47 kda protein;
PDBTitle: solution structure of the n-terminal sam-domain of a human2 putative 47 kda protein
50c1oxjA_
not modelled 98.0 20 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein smaug;
PDBTitle: crystal structure of the smaug rna binding domain
51c2e8nA_
not modelled 97.9 21 PDB header:transferase, signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1)
52d1ucva_
not modelled 97.8 13 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
53d1v38a_
not modelled 97.8 8 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
54d1b0xa_
not modelled 97.7 15 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
55c1b0xA_
not modelled 97.7 15 PDB header:transferase
Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase);
PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization.
56c2dl0A_
not modelled 97.7 16 PDB header:signaling protein
Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1;
PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1
57c2kivA_
not modelled 97.7 8 PDB header:signaling protein
Chain: A: PDB Molecule:ankyrin repeat and sterile alpha motif domain-
PDBTitle: aida-1 sam domain tandem
58c3senD_
not modelled 97.7 12 PDB header:signaling protein
Chain: D: PDB Molecule:caskin-1;
PDBTitle: structure of caskin1 tandem sams
59c3kkaD_
not modelled 97.7 15 PDB header:transferase
Chain: D: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: co-crystal structure of the sam domains of epha1 and epha2
60c2k4pA_
not modelled 97.6 13 PDB header:signaling protein
Chain: A: PDB Molecule:phosphatidylinositol-3,4,5-trisphosphate 5-
PDBTitle: solution structure of ship2-sam
61c2jydA_
97.6 52 PDB header:metal binding protein
Chain: A: PDB Molecule:f5 domain of myelin transcription factor 1;
PDBTitle: structure of the fifth zinc finger of myelin transcription2 factor 1
62c2cs8A_
97.6 38 PDB header:transcription
Chain: A: PDB Molecule:kiaa0535 protein;
PDBTitle: solution structure of tandem repeat of the fifth and sixth2 zinc-finger c2hc domains from human st18
63c2kg5A_
not modelled 97.6 13 PDB header:signaling protein
Chain: A: PDB Molecule:arf-gap, rho-gap domain, ank repeat and ph
PDBTitle: nmr solution structure of arap3-sam
64c1pxeA_
97.6 45 PDB header:metal binding protein
Chain: A: PDB Molecule:neural zinc finger transcription factor 1;
PDBTitle: solution structure of a cchhc domain of neural zinc finger2 factor-1
65d1sgga_
not modelled 97.5 13 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
66d1z1va1
not modelled 97.4 17 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
67c3dlmA_
not modelled 97.4 22 PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1;
PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1
68c2lmrA_
not modelled 97.3 10 PDB header:signaling protein
Chain: A: PDB Molecule:ankyrin repeat and sam domain-containing protein 1a;
PDBTitle: solution structure of the first sam domain of odin
69c2bkdN_
not modelled 97.1 8 PDB header:nuclear protein
Chain: N: PDB Molecule:fragile x mental retardation 1 protein;
PDBTitle: structure of the n-terminal domain of fragile x mental2 retardation protein
70c2qkqA_
not modelled 97.1 12 PDB header:transferase
Chain: A: PDB Molecule:ephrin type-b receptor 4;
PDBTitle: structure of the sam domain of human ephrin type-b receptor2 4
71d1sv0a_
not modelled 97.0 22 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
72c2ke7A_
not modelled 97.0 12 PDB header:protein binding
Chain: A: PDB Molecule:ankyrin repeat and sterile alpha motif domain-
PDBTitle: nmr structure of the first sam domain from aida1
73c2dkxA_
not modelled 96.9 10 PDB header:signaling protein
Chain: A: PDB Molecule:sam pointed domain-containing ets transcription
PDBTitle: solution structure of the sam_pnt-domain of ets2 transcription factor pdef (prostate ets)
74d1sxda_
not modelled 96.9 17 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
75c2e8pA_
not modelled 96.7 9 PDB header:signaling protein
Chain: A: PDB Molecule:elf3 protein;
PDBTitle: solution structure of the n-terminal sam-domain of e74-like2 factor 3
76d1ji7a_
not modelled 96.7 15 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
77c3hilB_
not modelled 96.7 18 PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: sam domain of human ephrin type-a receptor 1 (epha1)
78c2ytuA_
not modelled 96.6 11 PDB header:signaling protein
Chain: A: PDB Molecule:friend leukemia integration 1 transcription
PDBTitle: solution structure of the sam_pnt-domain of the human2 friend leukemiaintegration 1 transcription factor
79d1bqva_
not modelled 96.5 17 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
80d1sv0c_
not modelled 96.1 17 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
81d1wgsa_
not modelled 95.9 14 Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo barrel domain
82c2ekoA_
not modelled 95.8 14 PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase htatip;
PDBTitle: solution structure of ruh-073, a pseudo chromo domain from2 human cdna
83c2qb0D_
not modelled 95.6 15 PDB header:hydrolase regulator
Chain: D: PDB Molecule:telsam domain - lysozyme chimera;
PDBTitle: structure of the 2tel crystallization module fused to t4 lysozyme with2 an ala-gly-pro linker.
84c2ro0A_
not modelled 95.5 13 PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase esa1;
PDBTitle: solution structure of the knotted tudor domain of the yeast2 histone acetyltransferase, esa1
85c2eapA_
not modelled 95.5 25 PDB header:signaling protein
Chain: A: PDB Molecule:lymphocyte cytosolic protein 2;
PDBTitle: solution structure of the n-terminal sam-domain of human2 lymphocyte cytosolic protein 2
86c2lrqA_
not modelled 95.5 17 PDB header:transcription
Chain: A: PDB Molecule:nua4 complex subunit eaf3 homolog;
PDBTitle: chemical shift assignment and solution structure of fr822a from2 drosophila melanogaster. northeast structural genomics consortium3 target fr822a
87d1coka_
not modelled 95.2 12 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
88c2l8eA_
95.1 20 PDB header:dna binding protein
Chain: A: PDB Molecule:polyhomeotic-like protein 1;
PDBTitle: solution nmr structure of fcs domain of human polyhomeotic homolog 12 (hph1)
89d2f5ka1
not modelled 94.9 24 Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo barrel domain
90c2w0tA_
94.0 13 PDB header:transcription
Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like 2 protein;
PDBTitle: solution structure of the fcs zinc finger domain of human2 lmbl2
91c2lccA_
not modelled 92.2 26 PDB header:transcription
Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a;
PDBTitle: solution structure of rbbp1 chromobarrel domain
92c3m9qA_
not modelled 91.8 24 PDB header:dna binding protein
Chain: A: PDB Molecule:protein male-specific lethal-3;
PDBTitle: drosophila msl3 chromodomain
93c3m9pA_
not modelled 91.8 26 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:male-specific lethal 3 homolog;
PDBTitle: human msl3 chromodomain bound to dna and h4k20me1 peptide
94c2rnzA_
not modelled 90.1 17 PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase esa1;
PDBTitle: solution structure of the presumed chromodomain of the2 yeast histone acetyltransferase, esa1
95c2qqsB_
not modelled 90.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation
PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide
96c3idwA_
not modelled 83.5 7 PDB header:endocytosis
Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1;
PDBTitle: crystal structure of sla1 homology domain 2
97c4iutB_
not modelled 77.2 23 PDB header:gene regulation
Chain: B: PDB Molecule:sawadee homeodomain homolog 1;
PDBTitle: crystal structure of shh1 sawadee domain in complex with h3k9me22 peptide
98c2e8mA_
not modelled 76.9 17 PDB header:signaling protein
Chain: A: PDB Molecule:epidermal growth factor receptor kinase
PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8
99c1wwuA_
not modelled 76.4 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein flj21935;
PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935
100c2xdpA_
not modelled 69.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 4c;
PDBTitle: crystal structure of the tudor domain of human jmjd2c
101c1ssfA_
not modelled 67.1 28 PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
102d2buda1
not modelled 62.6 18 Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo barrel domain
103c3qiiA_
not modelled 60.0 31 PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
104c2ldmA_
not modelled 58.4 32 PDB header:transcription/protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of human phf20 tudor2 domain bound to a p53 segment2 containing a dimethyllysine analog p53k370me2
105d2d8ca1
not modelled 55.5 18 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
106c2eefA_
not modelled 55.1 19 PDB header:sugar binding protein
Chain: A: PDB Molecule:protein phosphatase 1, regulatory (inhibitor)
PDBTitle: solution structure of the cbm_21 domain from human protein2 phosphatase 1, regulatory (inhibitor) subunit 3b
107c2jz2A_
not modelled 50.6 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ssl0352 protein;
PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42
108c2e5qA_
not modelled 49.6 28 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 19;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens]
109c3p8dB_
not modelled 49.3 30 PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
110c2k3yA_
not modelled 49.1 21 PDB header:transcription regulator
Chain: A: PDB Molecule:chromatin modification-related protein eaf3;
PDBTitle: solution structure of eaf3 chromo barrel domain bound to2 histone h3 with a dimethyllysine analog h3k36me2
111c4he5A_
not modelled 48.7 20 PDB header:unknown function
Chain: A: PDB Molecule:peptidase family u32;
PDBTitle: crystal structure of the selenomethionine variant of the c-terminal2 domain of geobacillus thermoleovorans putative u32 peptidase
112c2lycA_
not modelled 48.7 14 PDB header:protein binding
Chain: A: PDB Molecule:spindle and kinetochore-associated protein 1 homolog;
PDBTitle: structure of c-terminal domain of ska1
113c2equA_
not modelled 45.2 23 PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
114c3metB_
not modelled 44.5 9 PDB header:transcription
Chain: B: PDB Molecule:saga-associated factor 29 homolog;
PDBTitle: crystal structure of sgf29 in complex with h3k4me2
115c2xk0A_
not modelled 41.2 23 PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
116c1miyB_
not modelled 39.6 19 PDB header:translation, transferase
Chain: B: PDB Molecule:trna cca-adding enzyme;
PDBTitle: crystal structure of bacillus stearothermophilus cca-adding enzyme in2 complex with ctp
117c3p9aI_
not modelled 39.4 29 PDB header:dna binding protein
Chain: I: PDB Molecule:dna-packaging protein gp3;
PDBTitle: an atomic view of the nonameric small terminase subunit of2 bacteriophage p22
118c2innA_
not modelled 38.8 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:phenol hydroxylase component phn;
PDBTitle: structure of the phenol hydroxyalse-regulatory protein2 complex
119c3m6wA_
not modelled 37.2 14 PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine
120c1xniI_
not modelled 35.5 20 PDB header:cell cycle
Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: tandem tudor domain of 53bp1

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