Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA2A432
DateTue Jul 30 13:09:03 BST 2013
Unique Job IDd2ac710a9d2be112
SequenceMSRSTRSKER ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:73.067 Y:97.368 Z:159.422
Model (left) based on template c2hyeC_
Top template information
PDB header:protein binding
Chain: C: PDB Molecule:cullin-4a;
PDBTitle: crystal structure of the ddb1-cul4a-rbx1-sv5v complex
Confidence and coverage
Confidence:100.0% Coverage: 74%
719 residues ( 74% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
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Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSRSTRSKERRENDTDSEDNSSETSNQERRRCRQGPPRPPYPPLLPPVFPPPTPPPQVRR
Secondary structure 
SS confidence 
Disorder  ??????????????????????????
???????
??????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  TRGLQDLGAMKSVCPGTSGFSSPNPSAASAAAQEVRSATDGNTSTTPPTSAKKRKLNSSS
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  SSSNSSNEREDFDSTSSSSTPPQPRDSASPSTSSFCLGVPVATSSHVPIQKKLRFEDTLE
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  FVGIDTKMAEESSSSSSSSSPTAATSQQQQQQQLKTKSILISSVASVHHANGLAKSSTAV
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  SSFANSKPGSAKKLVIKNFKDKPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQA
Secondary structure 
SS confidence 
Disorder  ??????????????
?????????????
?
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  VENLCSHKISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMI
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  RSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQTKTIDGILLLIERERNGEAI
Secondary structure 
SS confidence 
Disorder 
??
?
?
?
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  DRSLLRSLLSMLSDLQIYQDSFEQQFLQETNRLYAAEGQKLMQEREVPEYLHHVNKRLEE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  EADRLITYLDQTTQKSLIASVEKQLLGEHLTAILQKGLNSLLDENRIQDLSLLYQLFSRV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  RGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDTCFLKNEKFINA
Secondary structure 
SS confidence 
Disorder 
?
??
?
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  MKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVF
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  EAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFK
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  QYMQNQNVPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQW
Secondary structure 
SS confidence 
Disorder 
?????????
??
??
?
?
?
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  QSTLGHCVLKAEFKEGKKELQVSLFQTMVLLMFNEGEEFSLEEIKHATGIEDGELRRTLQ
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........850.........860.........870.........880.........890.........900
Sequence  SLACGKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVF
Secondary structure 
SS confidence 
Disorder 
?????
???????????
Disorder confidence 
 
   .........910.........920.........930.........940.........950.........960
Sequence  QDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDK
Secondary structure 
SS confidence 
Disorder 
??
?
??
Disorder confidence 
 
   .........970
Sequence  ENPNQYNYIA
Secondary structure 
SS confidence 
Disorder  ?
??
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 34%)
Alpha helix ( 51%)
Beta strand ( 5%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2hye chain C

3D model

Region: 252 - 970
Aligned: 719
Modelled: 719
Confidence: 100.0%
Identity: 85%
PDB header:protein binding
Chain: C: PDB Molecule:cullin-4a;
PDBTitle: crystal structure of the ddb1-cul4a-rbx1-sv5v complex

Phyre2

PDB 4a0l chain H

3D model

Region: 252 - 970
Aligned: 709
Modelled: 719
Confidence: 100.0%
Identity: 98%
PDB header:ligase/dna-binding protein/dna
Chain: H: PDB Molecule:cullin-4b;
PDBTitle: structure of ddb1-ddb2-cul4b-rbx1 bound to a 12 bp abasic2 site containing dna-duplex

Phyre2

PDB 1u6g chain A

3D model

Region: 270 - 970
Aligned: 689
Modelled: 701
Confidence: 100.0%
Identity: 33%
PDB header:ligase
Chain: A: PDB Molecule:cullin homolog 1;
PDBTitle: crystal structure of the cand1-cul1-roc1 complex

Phyre2

PDB 3dpl chain C

3D model

Region: 613 - 970
Aligned: 357
Modelled: 358
Confidence: 100.0%
Identity: 32%
PDB header:ligase
Chain: C: PDB Molecule:cullin-5;
PDBTitle: structural insights into nedd8 activation of cullin-ring2 ligases: conformational control of conjugation.

Phyre2

PDB 1ldk chain B

3D model

Region: 609 - 970
Aligned: 361
Modelled: 362
Confidence: 100.0%
Identity: 37%
PDB header:ligase
Chain: B: PDB Molecule:cullin homolog;
PDBTitle: structure of the cul1-rbx1-skp1-f boxskp2 scf ubiquitin2 ligase complex

Phyre2

PDB 2hye chain C domain 2

3D model

Region: 266 - 612
Aligned: 347
Modelled: 347
Confidence: 100.0%
Identity: 81%
Fold: alpha-alpha superhelix
Superfamily: Cullin repeat-like
Family: Cullin repeat

Phyre2

PDB 4apf chain B

3D model

Region: 265 - 610
Aligned: 333
Modelled: 346
Confidence: 100.0%
Identity: 30%
PDB header:cell cycle
Chain: B: PDB Molecule:cullin 3;
PDBTitle: crystal structure of the human klhl11-cul3 complex at 3.1a2 resolution

Phyre2

PDB 2wzk chain A

3D model

Region: 270 - 613
Aligned: 339
Modelled: 344
Confidence: 100.0%
Identity: 21%
PDB header:protein binding
Chain: A: PDB Molecule:cullin-5;
PDBTitle: structure of the cul5 n-terminal domain at 2.05a resolution.

Phyre2

PDB 1ldj chain A domain 2

3D model

Region: 270 - 613
Aligned: 336
Modelled: 343
Confidence: 100.0%
Identity: 28%
Fold: alpha-alpha superhelix
Superfamily: Cullin repeat-like
Family: Cullin repeat

Phyre2

PDB 2hye chain C domain 3

3D model

Region: 614 - 886
Aligned: 273
Modelled: 273
Confidence: 100.0%
Identity: 88%
Fold: Cullin homology domain
Superfamily: Cullin homology domain
Family: Cullin homology domain

Phyre2

PDB 4eoz chain D

3D model

Region: 264 - 557
Aligned: 292
Modelled: 294
Confidence: 100.0%
Identity: 30%
PDB header:protein binding
Chain: D: PDB Molecule:cullin-3;
PDBTitle: crystal structure of the spop btb domain complexed with the cul3 n-2 terminal domain

Phyre2

PDB 1ldj chain A domain 3

3D model

Region: 609 - 882
Aligned: 273
Modelled: 274
Confidence: 100.0%
Identity: 36%
Fold: Cullin homology domain
Superfamily: Cullin homology domain
Family: Cullin homology domain

Phyre2

PDB 2hye chain C domain 1

3D model

Region: 887 - 970
Aligned: 84
Modelled: 84
Confidence: 99.9%
Identity: 92%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: SCF ubiquitin ligase complex WHB domain

Phyre2

PDB 1ldj chain A domain 1

3D model

Region: 883 - 970
Aligned: 88
Modelled: 88
Confidence: 99.9%
Identity: 42%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: SCF ubiquitin ligase complex WHB domain

Phyre2

PDB 3o2p chain E

3D model

Region: 886 - 970
Aligned: 84
Modelled: 85
Confidence: 99.8%
Identity: 33%
PDB header:ligase, cell cycle
Chain: E: PDB Molecule:cell division control protein 53;
PDBTitle: a dual e3 mechanism for rub1 ligation to cdc53: dcn1(p)-cdc53(whb)

Phyre2

PDB 1iuy chain A

3D model

Region: 882 - 970
Aligned: 89
Modelled: 88
Confidence: 99.8%
Identity: 46%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: SCF ubiquitin ligase complex WHB domain

Phyre2

PDB 2xv4 chain S

3D model

Region: 807 - 964
Aligned: 138
Modelled: 158
Confidence: 95.5%
Identity: 14%
PDB header:transcription
Chain: S: PDB Molecule:dna-directed rna polymerase iii subunit rpc3;
PDBTitle: structure of human rpc62 (partial)

Phyre2

PDB 3lmm chain B

3D model

Region: 806 - 969
Aligned: 142
Modelled: 164
Confidence: 92.2%
Identity: 9%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the dip2311 protein from2 corynebacterium diphtheriae, northeast structural genomics3 consortium target cdr35

Phyre2

PDB 1p6r chain A

3D model

Region: 908 - 970
Aligned: 60
Modelled: 63
Confidence: 90.9%
Identity: 10%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Penicillinase repressor

Phyre2

PDB 3g3z chain A

3D model

Region: 802 - 858
Aligned: 55
Modelled: 57
Confidence: 90.6%
Identity: 11%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis

Phyre2
1
c2hyeC_
2
c4a0lH_
3
c1u6gA_
4
c3dplC_
5
c1ldkB_
6
d2hyec2
7
c4apfB_
8
c2wzkA_
9
d1ldja2
10
d2hyec3
11
c4eozD_
12
d1ldja3
13
d2hyec1
14
d1ldja1
15
c3o2pE_
16
d1iuya_
17
c2xv4S_
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c3lmmB_
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d1p6ra_
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c3g3zA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2hyeC_
100.0 85 PDB header:protein binding
Chain: C: PDB Molecule:cullin-4a;
PDBTitle: crystal structure of the ddb1-cul4a-rbx1-sv5v complex
2c4a0lH_
100.0 98 PDB header:ligase/dna-binding protein/dna
Chain: H: PDB Molecule:cullin-4b;
PDBTitle: structure of ddb1-ddb2-cul4b-rbx1 bound to a 12 bp abasic2 site containing dna-duplex
3c1u6gA_
100.0 33 PDB header:ligase
Chain: A: PDB Molecule:cullin homolog 1;
PDBTitle: crystal structure of the cand1-cul1-roc1 complex
4c3dplC_
100.0 32 PDB header:ligase
Chain: C: PDB Molecule:cullin-5;
PDBTitle: structural insights into nedd8 activation of cullin-ring2 ligases: conformational control of conjugation.
5c1ldkB_
100.0 37 PDB header:ligase
Chain: B: PDB Molecule:cullin homolog;
PDBTitle: structure of the cul1-rbx1-skp1-f boxskp2 scf ubiquitin2 ligase complex
6d2hyec2
100.0 81 Fold:alpha-alpha superhelix
Superfamily:Cullin repeat-like
Family:Cullin repeat
7c4apfB_
100.0 30 PDB header:cell cycle
Chain: B: PDB Molecule:cullin 3;
PDBTitle: crystal structure of the human klhl11-cul3 complex at 3.1a2 resolution
8c2wzkA_
100.0 21 PDB header:protein binding
Chain: A: PDB Molecule:cullin-5;
PDBTitle: structure of the cul5 n-terminal domain at 2.05a resolution.
9d1ldja2
100.0 28 Fold:alpha-alpha superhelix
Superfamily:Cullin repeat-like
Family:Cullin repeat
10d2hyec3
100.0 88 Fold:Cullin homology domain
Superfamily:Cullin homology domain
Family:Cullin homology domain
11c4eozD_
100.0 30 PDB header:protein binding
Chain: D: PDB Molecule:cullin-3;
PDBTitle: crystal structure of the spop btb domain complexed with the cul3 n-2 terminal domain
12d1ldja3
100.0 36 Fold:Cullin homology domain
Superfamily:Cullin homology domain
Family:Cullin homology domain
13d2hyec1
99.9 92 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:SCF ubiquitin ligase complex WHB domain
14d1ldja1
99.9 42 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:SCF ubiquitin ligase complex WHB domain
15c3o2pE_
99.8 33 PDB header:ligase, cell cycle
Chain: E: PDB Molecule:cell division control protein 53;
PDBTitle: a dual e3 mechanism for rub1 ligation to cdc53: dcn1(p)-cdc53(whb)
16d1iuya_
99.8 46 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:SCF ubiquitin ligase complex WHB domain
17c2xv4S_
95.5 14 PDB header:transcription
Chain: S: PDB Molecule:dna-directed rna polymerase iii subunit rpc3;
PDBTitle: structure of human rpc62 (partial)
18c3lmmB_
92.2 9 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the dip2311 protein from2 corynebacterium diphtheriae, northeast structural genomics3 consortium target cdr35
19d1p6ra_
90.9 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
20c3g3zA_
90.6 11 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
21d1wi9a_
not modelled 90.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PCI domain (PINT motif)
22c3cuoB_
not modelled 89.3 14 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
23c3cjnA_
not modelled 89.1 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi
24c3bpxB_
not modelled 89.0 16 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of marr
25c2qwwB_
not modelled 88.4 13 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
26d2etha1
not modelled 88.2 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
27d1mkma1
not modelled 88.1 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
28c1r22B_
not modelled 88.0 22 PDB header:transcription repressor
Chain: B: PDB Molecule:transcriptional repressor smtb;
PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
29c2k4bA_
not modelled 87.9 16 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: copr repressor structure
30d1ylfa1
not modelled 87.8 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
31c4em1A_
not modelled 87.8 24 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator sar2349;
PDBTitle: staphylococcus aureus marr native
32d1okra_
not modelled 87.5 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
33c3nrvC_
not modelled 87.3 15 PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
34c4fhtA_
not modelled 87.2 16 PDB header:transcription
Chain: A: PDB Molecule:pcav transcriptional regulator;
PDBTitle: crystal structure of the pcav transcriptional regulator from2 streptomyces coelicolor in complex with its natural ligand
35c2rdpA_
not modelled 86.9 9 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
36d1lnwa_
not modelled 86.8 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
37c2oqgA_
not modelled 86.7 11 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
38c2nyxB_
not modelled 86.7 15 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
39c3e6mD_
not modelled 86.4 15 PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
40d2frha1
not modelled 86.3 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
41d2fbia1
not modelled 86.2 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
42d1p4xa2
not modelled 86.2 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
43c1p4xA_
not modelled 86.0 18 PDB header:transcription
Chain: A: PDB Molecule:staphylococcal accessory regulator a homologue;
PDBTitle: crystal structure of sars protein from staphylococcus aureus
44c3t8tA_
not modelled 85.9 22 PDB header:unknown function
Chain: A: PDB Molecule:staphylococcus aureus cymr (oxidized form);
PDBTitle: crystal structure of staphylococcus aureus cymr oxidized form
45c2xroE_
not modelled 85.8 13 PDB header:dna-binding protein/dna
Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator
46d1z91a1
not modelled 85.5 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
47c3pqkD_
not modelled 85.4 25 PDB header:transcription
Chain: D: PDB Molecule:biofilm growth-associated repressor;
PDBTitle: crystal structure of the transcriptional repressor bigr from xylella2 fastidiosa
48d1r1ta_
not modelled 85.2 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
49c2jscB_
not modelled 85.2 13 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator rv1994c/mt2050;
PDBTitle: nmr structure of the cadmium metal-sensor cmtr from mycobacterium2 tuberculosis
50c3bjaA_
not modelled 85.1 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
51c2nnnB_
not modelled 85.1 11 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
52c3oopA_
not modelled 85.0 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2960 protein;
PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262
53d1ub9a_
not modelled 84.9 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
54c2fa5B_
not modelled 84.9 12 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
55d1sfxa_
not modelled 84.8 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
56d2bv6a1
not modelled 84.6 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
57c3nqoB_
not modelled 84.5 22 PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
58d2a61a1
not modelled 84.4 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
59c2kkoB_
not modelled 84.0 24 PDB header:dna binding protein
Chain: B: PDB Molecule:possible transcriptional regulatory protein
PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.
60d1s3ja_
not modelled 83.8 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
61c1mkmA_
not modelled 83.7 10 PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr
62c2o0yB_
not modelled 83.7 22 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.
63c2fxaB_
not modelled 83.5 13 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
64d1hsja1
not modelled 83.5 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
65c3f6vA_
not modelled 83.4 12 PDB header:transcription regulator
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family
PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance
66c3bj6B_
not modelled 82.9 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
67c2zkzC_
not modelled 82.7 14 PDB header:transcription
Chain: C: PDB Molecule:transcriptional repressor pagr;
PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis
68c3bddD_
not modelled 82.7 14 PDB header:transcription
Chain: D: PDB Molecule:regulatory protein marr;
PDBTitle: crystal structure of a putative multiple antibiotic-resistance2 repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a3 resolution
69c3k0lA_
not modelled 82.3 20 PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
70d2bbya_
not modelled 82.3 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding domain from rap30
71c3jthA_
not modelled 82.2 12 PDB header:transcription
Chain: A: PDB Molecule:transcription activator hlyu;
PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6
72d3broa1
not modelled 82.1 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
73c2wteB_
not modelled 82.1 15 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
74c3k69A_
not modelled 82.1 11 PDB header:transcription
Chain: A: PDB Molecule:putative transcription regulator;
PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution
75d1jgsa_
not modelled 82.0 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
76d1ku9a_
not modelled 81.9 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
77d2d1ha1
not modelled 81.8 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
78c3r4kD_
not modelled 81.3 21 PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
79c2pexA_
not modelled 81.3 23 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator ohrr;
PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris
80d2fbha1
not modelled 81.1 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
81c3tgnA_
not modelled 81.1 16 PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
82c3s2wB_
not modelled 80.6 14 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1
83c2l02B_
not modelled 80.6 27 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375
84c3cdhB_
not modelled 80.5 7 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3
85c4hblA_
not modelled 80.4 18 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of abfr of staphylococcus epidermidis
86c2y75F_
not modelled 79.8 19 PDB header:transcription
Chain: F: PDB Molecule:hth-type transcriptional regulator cymr;
PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis
87d1biaa1
not modelled 79.8 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
88c3zmdD_
not modelled 79.6 11 PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of absc, a marr family transcriptional2 regulator from streptomyces coelicolor
89d1sd4a_
not modelled 79.4 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
90c2g7uB_
not modelled 79.0 29 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
91d1fy7a_
not modelled 78.7 22 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
92c3f6oB_
not modelled 78.6 11 PDB header:transcription regulator
Chain: B: PDB Molecule:probable transcriptional regulator, arsr family
PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
93c3f3xA_
not modelled 78.3 13 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of the transcriptional regulator bldr2 from sulfolobus solfataricus
94c2lkpB_
not modelled 77.8 19 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, arsr family;
PDBTitle: solution structure of apo-nmtr
95d1sxje1
not modelled 77.7 19 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
96c3hrmA_
not modelled 77.2 16 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator sarz;
PDBTitle: crystal structure of staphylococcus aureus protein sarz in sulfenic2 acid form
97d1r1ua_
not modelled 76.9 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
98d1lj9a_
not modelled 76.1 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
99d2cg4a1
not modelled 76.1 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
100d3deua1
not modelled 75.8 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
101c3lwfD_
not modelled 75.5 13 PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution
102c2vn2B_
not modelled 75.2 23 PDB header:replication
Chain: B: PDB Molecule:chromosome replication initiation protein;
PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426
103d2fxaa1
not modelled 74.5 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
104d1p4xa1
not modelled 74.2 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
105c1hsjA_
not modelled 73.9 25 PDB header:transcription/sugar binding protein
Chain: A: PDB Molecule:fusion protein consisting of staphylococcus
PDBTitle: sarr mbp fusion structure
106c2fsgA_
not modelled 73.6 14 PDB header:protein transport
Chain: A: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: complex seca:atp from escherichia coli
107d1i1ga1
not modelled 73.2 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
108c4b8xB_
not modelled 73.2 19 PDB header:transcription
Chain: B: PDB Molecule:possible marr-transcriptional regulator;
PDBTitle: near atomic resolution crystal structure of sco5413, a marr family2 transcriptional regulator from streptomyces coelicolor
109c3zplE_
not modelled 72.6 15 PDB header:transcription/dna
Chain: E: PDB Molecule:putative marr-family transcriptional repressor;
PDBTitle: crystal structure of sco3205, a marr family transcriptional2 regulator from streptomyces coelicolor, in complex with dna
110d2g9wa1
not modelled 72.4 7 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
111c3deuB_
not modelled 72.3 22 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator slya;
PDBTitle: crystal structure of transcription regulatory protein slya2 from salmonella typhimurium in complex with salicylate3 ligands
112c2l4aA_
not modelled 71.2 12 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
113c2gxgA_
not modelled 70.9 11 PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
114c4ijaA_
not modelled 70.3 15 PDB header:protein binding
Chain: A: PDB Molecule:xylr protein;
PDBTitle: structure of s. aureus methicillin resistance factor mecr2
115c2ia2D_
not modelled 70.2 22 PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1
116c3kp3B_
not modelled 70.0 20 PDB header:transcription regulator/antibiotic
Chain: B: PDB Molecule:transcriptional regulator tcar;
PDBTitle: staphylococcus epidermidis in complex with ampicillin
117c2z99A_
not modelled 69.0 16 PDB header:cell cycle
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of scpb from mycobacterium tuberculosis
118d1xd7a_
not modelled 68.7 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
119c3fm5D_
not modelled 66.3 11 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1
120c4hf1B_
not modelled 65.9 19 PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator iscr;
PDBTitle: crystal structure of iscr bound to its promoter

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