Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA2A3V1
DateTue Jul 30 13:01:13 BST 2013
Unique Job IDbbb18aa4657c79ba
SequenceMTVTVVYDNS ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:70.461 Y:31.408 Z:53.228
Model (left) based on template c3s01A_
Top template information
PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l;
PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution
Confidence and coverage
Confidence: 97.3% Coverage: 15%
145 residues ( 15% of your sequence) have been modelled with 97.3% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
199 residues ( 21%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTVTVVYDNSEATELCAAQHLYLKPIAKLMINVLLPECIEPVRPFSNWEVLDQLKSLICP
Secondary structure 




















SS confidence 



























































Disorder  ??



?





?


??













?????????

















Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  DQFTTVRLSKSTKDFIRFEGEAETRSLVQILKAKLHGKIIKLNGLKTDLKVVATDAQGEW
Secondary structure 

























SS confidence 



























































Disorder 








??























??




?

??





????


Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  EHFPKEKEASVIEGAEEQDHDKGPDSIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFG
Secondary structure 



































SS confidence 



























































Disorder 










?
???????????














????????












Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  KIKNVDIPMLDPYREVMTGGSFGGLNFGLQTFEAFIQYQESTDFIKAMESLRGMKLMLKG
Secondary structure 


























SS confidence 



























































Disorder 











?

?????????


























??


????
Disorder confidence 



























































 
   .........250.........260.........270.........280.........290.........300
Sequence  DDGKALACNIKVMFDTTKHFSEGAIQRRNQERLKLQELEEERKKEKKREEEVAERKRKDE
Secondary structure 





SS confidence 



























































Disorder  ?????











?
??






































Disorder confidence 



























































 
   .........310.........320.........330.........340.........350.........360
Sequence  VRKAQEKRKKARDRRRALKERDRHRQRKEKVKTKPEARQELDSSGEWEERKYLLARRRVE
Secondary structure 
SS confidence 



























































Disorder 



























































Disorder confidence 



























































 
   .........370.........380.........390.........400.........410.........420
Sequence  ALRLLRVLLKKIAVWMRKEKNLKPCQTHISLLLNCLGSTQCNPQEVGVMKSEAHHTPGTA
Secondary structure 
SS confidence 



























































Disorder 







































??












?



Disorder confidence 



























































 
   .........430.........440.........450.........460.........470.........480
Sequence  LKSPEEEELNTRHLLDWEEMPSYQASTLDLSQKAEKRCYQASKSDNKQKQKGKKKTKAQL
Secondary structure 
SS confidence 



























































Disorder 

?


??





??

??







































Disorder confidence 



























































 
   .........490.........500.........510.........520.........530.........540
Sequence  QKSSHTPGVKQMRHSARKEETGKVLSDGCDYSLVSDQNSLQSTMIADQSLAKEDHASSNE
Secondary structure 




SS confidence 



























































Disorder 


???
?




?









??





????







??????









Disorder confidence 



























































 
   .........550.........560.........570.........580.........590.........600
Sequence  SHSSRQAVINRGRKQKIYETDEFIDYLLNYYQTPEYARFCLEASHLTSTCQWQRDVYAKG
Secondary structure 






SS confidence 



























































Disorder 



???????





















?




??????????






????
Disorder confidence 



























































 
   .........610.........620.........630.........640.........650.........660
Sequence  DGFQIYLRKQGYHSNSLSEEESLQGIEQDEEQDWPQVYIKDPESKSQKTGKINYAKEFTK
Secondary structure 





SS confidence 



























































Disorder  ?


??




??







???????????




?
????????












Disorder confidence 



























































 
   .........670.........680.........690.........700.........710.........720
Sequence  KLKNHCKDIASETDEHLSPTDGESYPVEKIHSHGVKDSQHIRKSPVSSSLRSVDVGLPLA
Secondary structure 









SS confidence 



























































Disorder 






?????????????????






?


??

?????
???




????


Disorder confidence 



























































 
   .........730.........740.........750.........760.........770.........780
Sequence  DFLEEISSDSECFSETLSMNQEEEERSMAVYNSSPEKRPLGTDKISTCKQKTKSSQQTLC
Secondary structure 

SS confidence 



























































Disorder 






























???
??????










???




Disorder confidence 



























































 
   .........790.........800.........810.........820.........830.........840
Sequence  SEWKHDNEGKYSKHRVRAPGKRSKSELRYSWLEEEGDSIRVDKNISKTRGKLAPKHMLDE
Secondary structure 


SS confidence 



























































Disorder 
?
??????








????










?















???

?????
Disorder confidence 



























































 
   .........850.........860.........870.........880.........890.........900
Sequence  GQYHESSSSDELESTTRKKRRLTSGMFDQNVKYRPLHMPSMPPKRARAFYLGYFSRKRQT
Secondary structure 
































SS confidence 



























































Disorder 
????????











??????







????????













???
Disorder confidence 



























































 
   .........910.........920.........930.........940.........950.........
Sequence  PWKSEYNQDVRRFKRYENSEDYTLDSDNYYVSHDDNQEHIEYGSYLGDSYSSSLYFKMF
Secondary structure 


























SS confidence 


























































Disorder  ?????








??
????











?
?

?















????
Disorder confidence 


























































 

Confidence Key
High(9)                    Low (0)
?Disordered ( 26%)
Alpha helix ( 71%)
Beta strand ( 7%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3s01 chain A

3D model

Region: 81 - 261
Aligned: 145
Modelled: 156
Confidence: 97.3%
Identity: 14%
PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l;
PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution

Phyre2

PDB 2i38 chain A

3D model

Region: 95 - 257
Aligned: 124
Modelled: 135
Confidence: 97.0%
Identity: 27%
PDB header:rna binding protein/chimera
Chain: A: PDB Molecule:fusion protein consists of immunoglobin g-
PDBTitle: solution structure of the rrm of srp20

Phyre2

PDB 3s8s chain A

3D model

Region: 143 - 236
Aligned: 69
Modelled: 94
Confidence: 96.7%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd1a;
PDBTitle: crystal structure of the rrm domain of human setd1a

Phyre2

PDB 2cpx chain A domain 1

3D model

Region: 140 - 259
Aligned: 86
Modelled: 106
Confidence: 96.5%
Identity: 22%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2bz2 chain A domain 1

3D model

Region: 146 - 260
Aligned: 73
Modelled: 95
Confidence: 96.5%
Identity: 22%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2dgp chain A

3D model

Region: 139 - 237
Aligned: 74
Modelled: 85
Confidence: 96.4%
Identity: 24%
PDB header:rna binding protein
Chain: A: PDB Molecule:bruno-like 4, rna binding protein;
PDBTitle: solution structure of the n-terminal rna binding domain in2 bruno-like 4 rna-binding protein

Phyre2

PDB 2cpi chain A domain 1

3D model

Region: 143 - 236
Aligned: 73
Modelled: 94
Confidence: 96.4%
Identity: 23%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 1wf1 chain A

3D model

Region: 135 - 236
Aligned: 70
Modelled: 77
Confidence: 96.4%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 1whx chain A

3D model

Region: 145 - 236
Aligned: 61
Modelled: 75
Confidence: 96.3%
Identity: 30%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 1fj7 chain A

3D model

Region: 132 - 237
Aligned: 79
Modelled: 80
Confidence: 96.3%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2kn4 chain A

3D model

Region: 137 - 239
Aligned: 78
Modelled: 89
Confidence: 96.3%
Identity: 26%
PDB header:rna binding protein
Chain: A: PDB Molecule:immunoglobulin g-binding protein g, splicing factor;
PDBTitle: the structure of the rrm domain of sc35

Phyre2

PDB 1wex chain A

3D model

Region: 146 - 261
Aligned: 78
Modelled: 101
Confidence: 96.3%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 1n54 chain B

3D model

Region: 142 - 260
Aligned: 89
Modelled: 105
Confidence: 96.2%
Identity: 21%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 3r27 chain A

3D model

Region: 146 - 261
Aligned: 78
Modelled: 96
Confidence: 96.2%
Identity: 19%
PDB header:protein binding
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l;
PDBTitle: crystal structure of the first rrm domain of heterogeneous nuclear2 ribonucleoprotein l (hnrnp l)

Phyre2

PDB 2cq1 chain A domain 1

3D model

Region: 140 - 260
Aligned: 83
Modelled: 106
Confidence: 96.1%
Identity: 17%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 3sde chain B

3D model

Region: 141 - 236
Aligned: 65
Modelled: 76
Confidence: 96.1%
Identity: 29%
PDB header:rna binding protein
Chain: B: PDB Molecule:non-pou domain-containing octamer-binding protein;
PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono

Phyre2

PDB 3egn chain A

3D model

Region: 139 - 258
Aligned: 91
Modelled: 109
Confidence: 96.1%
Identity: 26%
PDB header:splicing
Chain: A: PDB Molecule:rna-binding protein 40;
PDBTitle: c-terminal rna recognition motif of the u11/u12 65k protein

Phyre2

PDB 2krb chain A

3D model

Region: 146 - 236
Aligned: 70
Modelled: 91
Confidence: 96.1%
Identity: 27%
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3
PDBTitle: solution structure of eif3b-rrm bound to eif3j peptide

Phyre2

PDB 2fy1 chain A

3D model

Region: 138 - 236
Aligned: 73
Modelled: 84
Confidence: 96.1%
Identity: 23%
PDB header:structural protein/rna
Chain: A: PDB Molecule:rna-binding motif protein, y chromosome, family
PDBTitle: a dual mode of rna recognition by the rbmy protein

Phyre2

PDB 2b0g chain A domain 1

3D model

Region: 139 - 236
Aligned: 68
Modelled: 80
Confidence: 96.0%
Identity: 28%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2adc chain A

3D model

Region: 47 - 236
Aligned: 161
Modelled: 161
Confidence: 95.5%
Identity: 19%
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1;
PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd34 complexed with cucucu rna

Phyre2
1

c3s01A_
2

c2i38A_
3

c3s8sA_
4

d2cpxa1
5

d2bz2a1
6

c2dgpA_
7

d2cpia1
8

d1wf1a_
9

d1whxa_
10

d1fj7a_
11

c2kn4A_
12

d1wexa_
13

d1n54b_
14

c3r27A_
15

d2cq1a1
16

c3sdeB_
17

c3egnA_
18

c2krbA_
19

c2fy1A_
20

d2b0ga1
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50

c2adcA_
51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75



76



77



78



79



80



81



82



83



84



85



86



87



88



89



90



91



92



93



94



95



96



97



98



99



100



101



102



103



104



105



106



107



108



109



110



111



112



113



114



115



116



117



118



119



120



121



122



123



124



125



126



127



128



129



130



131



132



133



134



135



136



137



138



139



140



141



142



143



144



145



146



147



148



149



150



151



152



153



154



155



156



157



158



159



160



161



162



163



164



165



166



167



168



169



170



171



172



173



174



175



176



177



178



179



180



181



182



183



184



185



186



187



188



189



190



191



192



193



194



195



196



197



198



199



200



201



202



203



204



205



206



207



208



209



210



211



212



213



214



215



216



217



218



219



220



221



222



223



224



225



226



227



228



229



230



231



232



233



234



235



236



237



238



239



240



241



242



243



244



245



246



247



248



249



250



251



252



253



254



255



256



257



258



259



260



261



262



263



264



265



266



267



268



269



270



271



272



273



274



275



276



277



278



279



280



281



282



283



284



285



286



287



288



289



290



291



292



293



294



295



296



297



298



299



300



301



302



303



304



305






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3s01A_



97.3 14 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l;
PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution
2c2i38A_



97.0 27 PDB header:rna binding protein/chimera
Chain: A: PDB Molecule:fusion protein consists of immunoglobin g-
PDBTitle: solution structure of the rrm of srp20
3c3s8sA_



96.7 17 PDB header:transcription
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd1a;
PDBTitle: crystal structure of the rrm domain of human setd1a
4d2cpxa1



96.5 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
5d2bz2a1



96.5 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
6c2dgpA_



96.4 24 PDB header:rna binding protein
Chain: A: PDB Molecule:bruno-like 4, rna binding protein;
PDBTitle: solution structure of the n-terminal rna binding domain in2 bruno-like 4 rna-binding protein
7d2cpia1



96.4 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
8d1wf1a_



96.4 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
9d1whxa_



96.3 30 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
10d1fj7a_



96.3 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
11c2kn4A_



96.3 26 PDB header:rna binding protein
Chain: A: PDB Molecule:immunoglobulin g-binding protein g, splicing factor;
PDBTitle: the structure of the rrm domain of sc35
12d1wexa_



96.3 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
13d1n54b_



96.2 21 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
14c3r27A_



96.2 19 PDB header:protein binding
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l;
PDBTitle: crystal structure of the first rrm domain of heterogeneous nuclear2 ribonucleoprotein l (hnrnp l)
15d2cq1a1



96.1 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
16c3sdeB_



96.1 29 PDB header:rna binding protein
Chain: B: PDB Molecule:non-pou domain-containing octamer-binding protein;
PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono
17c3egnA_



96.1 26 PDB header:splicing
Chain: A: PDB Molecule:rna-binding protein 40;
PDBTitle: c-terminal rna recognition motif of the u11/u12 65k protein
18c2krbA_



96.1 27 PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3
PDBTitle: solution structure of eif3b-rrm bound to eif3j peptide
19c2fy1A_



96.1 23 PDB header:structural protein/rna
Chain: A: PDB Molecule:rna-binding motif protein, y chromosome, family
PDBTitle: a dual mode of rna recognition by the rbmy protein
20d2b0ga1



96.0 28 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
21d1fnxh1



not modelled 96.0 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
22c2cpiA_



not modelled 96.0 25 PDB header:gene regulation
Chain: A: PDB Molecule:ccr4-not transcription complex subunit 4;
PDBTitle: solution structure of the rna recognition motif of cnot4
23c2jrsA_



not modelled 96.0 26 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 39;
PDBTitle: solution nmr structure of caper rrm2 domain. northeast2 structural genomics target hr4730a
24c2dnzA_



not modelled 96.0 29 PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna-binding protein 23;
PDBTitle: solution structure of the second rna binding domain of rna2 binding motif protein 23
25d1fnxh2



not modelled 95.9 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
26d1x4fa1



not modelled 95.9 25 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
27d1x4ga1



not modelled 95.9 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
28c2jx2A_



not modelled 95.8 24 PDB header:transcription
Chain: A: PDB Molecule:negative elongation factor e;
PDBTitle: solution conformation of rna-bound nelf-e rrm
29c2divA_



not modelled 95.8 16 PDB header:rna binding protein
Chain: A: PDB Molecule:trna selenocysteine associated protein;
PDBTitle: solution structure of the rrm domain of trna selenocysteine2 associated protein
30c2do0A_



not modelled 95.8 16 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m;
PDBTitle: solution structure of the rna binding domain of2 heterogeneous nuclear ribonucleoprotein m
31d2f9da1



not modelled 95.7 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
32c2la6A_



not modelled 95.7 15 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein fus;
PDBTitle: solution nmr structure of rrm domain of rna-binding protein fus from2 homo sapiens, northeast structural genomics consortium target hr6430a
33c3pgwS_



not modelled 95.7 20 PDB header:splicing/dna/rna
Chain: S: PDB Molecule:u1-70k;
PDBTitle: crystal structure of human u1 snrnp
34d1x5ua1



not modelled 95.7 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
35c2e5iA_



not modelled 95.7 16 PDB header:gene regulation
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l-like;
PDBTitle: solution structure of rna binding domain 2 in heterogeneous2 nuclear ribonucleoprotein l-like
36d2cq3a1



not modelled 95.7 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
37c3md1B_



not modelled 95.7 20 PDB header:rna binding protein
Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1)
38d1x4aa1



not modelled 95.7 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
39c3ns5B_



not modelled 95.7 25 PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b;
PDBTitle: crystal structure of the rna recognition motif of yeast eif3b residues2 76-161
40d1fjeb1



not modelled 95.7 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
41c2f3jA_



not modelled 95.6 24 PDB header:transport protein
Chain: A: PDB Molecule:rna and export factor binding protein 2;
PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155).
42c3pgwP_



not modelled 95.6 25 PDB header:splicing/dna/rna
Chain: P: PDB Molecule:u1-a;
PDBTitle: crystal structure of human u1 snrnp
43d1wi8a_



not modelled 95.6 21 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
44d1hl6a_



not modelled 95.6 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
45c2dnoA_



not modelled 95.6 20 PDB header:rna binding protein
Chain: A: PDB Molecule:trinucleotide repeat containing 4 variant;
PDBTitle: solution structure of rna binding domain in trinucleotide2 repeat containing 4 variant
46d1sjqa_



not modelled 95.6 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
47d2cpza1



not modelled 95.6 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
48d2ghpa1



not modelled 95.5 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
49c3ns6B_



not modelled 95.5 24 PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b;
PDBTitle: crystal structure of hte rna recognition motif of yeast eif3b residues2 76-170
50c2adcA_



95.5 19 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1;
PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd34 complexed with cucucu rna
51d2cpea1



not modelled 95.5 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
52c2lcwA_



not modelled 95.5 17 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein fus;
PDBTitle: solution structure of fus/tls rrm domain
53d2ghpa3



not modelled 95.5 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
54d1b7fa1



not modelled 95.5 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
55c2rneA_



not modelled 95.4 16 PDB header:rna binding protein
Chain: A: PDB Molecule:tia1 protein;
PDBTitle: solution structure of the second rna recognition motif2 (rrm) of tia-1
56d2cq2a1



not modelled 95.4 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
57d2adca1



not modelled 95.4 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
58c3u1lA_



not modelled 95.4 19 PDB header:splicing
Chain: A: PDB Molecule:pre-mrna-splicing factor cwc2;
PDBTitle: structure of the mrna splicing complex component cwc2
59c2lkzA_



not modelled 95.4 17 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 5;
PDBTitle: solution structure of the second rrm domain of rbm5
60c2ku7A_



not modelled 95.4 21 PDB header:transcription
Chain: A: PDB Molecule:mll1 phd3-cyp33 rrm chimeric protein;
PDBTitle: solution structure of mll1 phd3-cyp33 rrm chimeric protein
61c2nlwA_



not modelled 95.3 25 PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3
PDBTitle: solution structure of the rrm domain of human eukaryotic2 initiation factor 3b
62c2kviA_



not modelled 95.3 28 PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3;
PDBTitle: structure of nab3 rrm
63c2dnqA_



not modelled 95.3 27 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 4b;
PDBTitle: solution structure of rna binding domain 1 in rna-binding2 protein 30
64d2cqca1



not modelled 95.3 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
65d1whwa_



not modelled 95.3 21 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
66d1whya_



not modelled 95.2 37 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
67c2dh9A_



not modelled 95.2 23 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m;
PDBTitle: solution structure of the c-terminal rna binding domain in2 heterogeneous nuclear ribonucleoprotein m
68d1h6kx_



not modelled 95.2 31 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
69c2e44A_



not modelled 95.2 15 PDB header:rna binding protein
Chain: A: PDB Molecule:insulin-like growth factor 2 mrna binding
PDBTitle: solution structure of rna binding domain in insulin-like2 growth factor 2 mrna binding protein 3
70d1h2tz_



not modelled 95.2 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
71c2do4A_



not modelled 95.2 17 PDB header:immune system
Chain: A: PDB Molecule:squamous cell carcinoma antigen recognized by t-
PDBTitle: solution structure of the rna binding domain of squamous2 cell carcinoma antigen recognized by t cells 3
72c2e5jA_



not modelled 95.2 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain
PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing
73d2cpha1



not modelled 95.1 28 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
74d1x5oa1



not modelled 95.1 15 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
75c4a8xA_



not modelled 95.1 20 PDB header:transcription
Chain: A: PDB Molecule:rna-binding protein with serine-rich domain 1;
PDBTitle: structure of the core asap complex
76d2ad9a1



not modelled 95.1 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
77d2cqba1



not modelled 95.1 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
78c3cw18_



not modelled 95.0 22 PDB header:splicing
Chain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda;
PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop; PDBTitle: crystal structure of human spliceosomal u1 snrnp
79d1b7fa2



not modelled 95.0 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
80c2kxnB_



not modelled 95.0 25 PDB header:rna binding protein/rna
Chain: B: PDB Molecule:transformer-2 protein homolog beta;
PDBTitle: nmr structure of human tra2beta1 rrm in complex with aagaac rna
81d2j0sd1



not modelled 95.0 25 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
82d1fxla1



not modelled 95.0 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
83d1x5sa1



not modelled 94.9 21 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
84d2erra1



not modelled 94.9 25 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
85c2d9oA_



not modelled 94.9 22 PDB header:rna binding protein
Chain: A: PDB Molecule:dnaj (hsp40) homolog, subfamily c, member 17;
PDBTitle: solution structure of rna binding domain in hypothetical2 protein flj10634
86c2lxiA_



not modelled 94.9 20 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 10;
PDBTitle: nmr structure of the n-terminal rna binding domain 1 (rrm1) of the2 protein rbm10 from homo sapiens
87d1h2vz_



not modelled 94.8 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
88d2u1aa_



not modelled 94.8 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
89c2ywkA_



not modelled 94.8 20 PDB header:rna binding protein
Chain: A: PDB Molecule:putative rna-binding protein 11;
PDBTitle: crystal structure of rrm-domain derived from human putative2 rna-binding protein 11
90d1u6fa1



not modelled 94.8 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
91d2adba1



not modelled 94.8 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
92c2fhoB_



not modelled 94.7 25 PDB header:rna binding protein
Chain: B: PDB Molecule:spliceosomal protein p14;
PDBTitle: nmr solution structure of the human spliceosomal protein2 complex p14-sf3b155
93c2jvoA_



not modelled 94.7 30 PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolar protein 3;
PDBTitle: segmental isotope labeling of npl3
94d2ghpa2



not modelled 94.7 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
95c3nnhA_



not modelled 94.7 19 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:cugbp elav-like family member 1;
PDBTitle: crystal structure of the cugbp1 rrm1 with guuguuuuguuu rna
96c2dnlA_



not modelled 94.7 21 PDB header:translation
Chain: A: PDB Molecule:cytoplasmic polyadenylation element binding
PDBTitle: solution structure of rna binding domain in cytoplasmic2 polyadenylation element binding protein 3
97d1no8a_



not modelled 94.7 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
98c1no8A_



not modelled 94.7 27 PDB header:rna binding protein
Chain: A: PDB Molecule:aly;
PDBTitle: solution structure of the nuclear factor aly rbd domain
99c3ex7B_



not modelled 94.7 22 PDB header:hydrolase/rna binding protein/rna
Chain: B: PDB Molecule:rna-binding protein 8a;
PDBTitle: the crystal structure of ejc in its transition state
100d1fxla2



not modelled 94.6 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
101c2x1aA_



not modelled 94.6 18 PDB header:transcription/rna
Chain: A: PDB Molecule:mrna 3'-end-processing protein rna15;
PDBTitle: structure of rna15 rrm with rna bound (g)
102c2e5hA_



not modelled 94.6 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:zinc finger cchc-type and rna-binding motif-
PDBTitle: solution structure of rna binding domain in zinc finger2 cchc-type and rna binding motif 1
103c2xnqA_



not modelled 94.6 27 PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3;
PDBTitle: structural insights into cis element recognition of non-2 polyadenylated rnas by the nab3-rrm
104c2a3jA_



not modelled 94.6 15 PDB header:rna binding protein
Chain: A: PDB Molecule:u1 small nuclear ribonucleoprotein a;
PDBTitle: structure of urndesign, a complete computational redesign2 of human u1a protein
105c2pehA_



not modelled 94.6 17 PDB header:protein binding
Chain: A: PDB Molecule:splicing factor 45;
PDBTitle: crystal structure of the uhm domain of human spf45 in complex with2 sf3b155-ulm5
106c2la4A_



not modelled 94.5 19 PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: nmr structure of the c-terminal rrm domain of poly(u) binding 1
107d2cqia1



not modelled 94.5 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
108c2ghpC_



not modelled 94.5 19 PDB header:rna binding protein
Chain: C: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: crystal structure of the n-terminal 3 rna binding domains of the yeast2 splicing factor prp24
109c2dhgA_



not modelled 94.5 10 PDB header:rna binding protein
Chain: A: PDB Molecule:trna selenocysteine associated protein (secp43);
PDBTitle: solution structure of the c-terminal rna recognition motif2 in trna selenocysteine associated protein
110c2d9pA_



not modelled 94.5 20 PDB header:rna binding protein
Chain: A: PDB Molecule:polyadenylate-binding protein 3;
PDBTitle: solution structure of rna binding domain 4 in2 polyadenylation binding protein 3
111d1cvja1



not modelled 94.5 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
112d1oiaa_



not modelled 94.4 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
113c2dngA_



not modelled 94.4 14 PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4h;
PDBTitle: solution structure of rna binding domain in eukaryotic2 translation initiation factor 4h
114c2dnpA_



not modelled 94.4 21 PDB header:transcription
Chain: A: PDB Molecule:rna-binding protein 14;
PDBTitle: solution structure of rna binding domain 2 in rna-binding2 protein 14
115d2adca2



not modelled 94.3 25 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
116c2dguA_



not modelled 94.3 37 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein q;
PDBTitle: solution structure of the rna binding domain in2 heterogeneous nuclear ribonucleoprotein q
117c1cvjF_



not modelled 94.3 23 PDB header:gene regulation/rna
Chain: F: PDB Molecule:polyadenylate binding protein 1;
PDBTitle: x-ray crystal structure of the poly(a)-binding protein in2 complex with polyadenylate rna
118d1weya_



not modelled 94.2 16 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
119d1s79a_



not modelled 94.1 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
120d1p1ta_



not modelled 94.1 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below