Phyre 2 Results for A1E960

Email	l.a.kelley@imperial.ac.uk
Description	A1E960
Date	Wed Jul 10 14:29:05 BST 2013
Unique Job ID	afb3a6805f36e8c7
Sequence	MKIIILLGLI ... Download FASTA

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:18.943 Y:19.230 Z:29.765

Model (left) based on template d1y7ta1

Top template information

Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like

Confidence and coverage

Confidence:

16.1%

Coverage:

12%

34 residues ( 12% of your sequence) have been modelled with 16.1% confidence by the single highest scoring template.

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3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M K I I I L L G L I G A S S S A P L I S Q R L L S A S N S H E L L L N L N N G Q L L P L Q F Q G A F N S W I P P F P G F

Secondary structure

SS confidence

Disorder ? ?
?
? ? ? ? ? ? ? ? ? ?
?
?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence L Q Q Q Q A Q V S G R P Q F T L S T L E S F A G L F P N Q I P L S R Q V G L A Q G G Q A G Q P D L S Q Q Q T P P Q T Q Q

Secondary structure

SS confidence

Disorder
?
? ? ? ? ? ? ?
? ? ? ?
? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence S A S P M S Y V V P V K V P Q D Q T Q M F Q Y Y P V Y M L L P W E Q P Q T V T S S P Q H T G Q Q L F E E Q I P F Y N Q F

Secondary structure

SS confidence

Disorder ?
?
?
? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence G F A P P Q A E P G V P G G Q Q H L A F D S F V G T A P E T P G M P V E G S L L Y P Q K E P I S F K H D N A G V F M P T

Secondary structure

SS confidence

Disorder
? ? ? ? ? ? ? ? ? ? ?
?
? ? ?
? ?
?
?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . .

Sequence T S P K P S T D N F F T S G I D P T I A P E Q K V K T D S L R E P

Secondary structure

SS confidence

Disorder ? ? ?
? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 44%)

Alpha helix ( 31%)

Beta strand ( 16%)

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 1y7t chain A domain 1

Region: 1 - 34
Aligned: 34
Modelled: 34
Confidence: 16.1%
Identity: 21%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: LDH N-terminal domain-like

Phyre2

PDB 2v6b chain B

Region: 1 - 34
Aligned: 29
Modelled: 34
Confidence: 11.6%
Identity: 38%
PDB header:oxidoreductase
Chain: B: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: crystal structure of lactate dehydrogenase from deinococcus2 radiodurans (apo form)

Phyre2

PDB 1s1i chain N

Region: 206 - 236
Aligned: 31
Modelled: 31
Confidence: 9.4%
Identity: 23%
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.

Phyre2

PDB 1y0n chain A

Region: 147 - 154
Aligned: 8
Modelled: 8
Confidence: 8.1%
Identity: 38%
Fold: YehU-like
Superfamily: YehU-like
Family: YehU-like

Phyre2

PDB 1b8p chain A domain 1

Region: 1 - 39
Aligned: 39
Modelled: 39
Confidence: 6.8%
Identity: 18%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: LDH N-terminal domain-like

Phyre2

PDB 1hyg chain A

Region: 1 - 34
Aligned: 29
Modelled: 34
Confidence: 6.7%
Identity: 28%
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate/malate dehydrogenase;
PDBTitle: crystal structure of mj0490 gene product, the family of2 lactate/malate dehydrogenase

Phyre2

PDB 1mv8 chain A domain 2

Region: 1 - 34
Aligned: 27
Modelled: 34
Confidence: 6.4%
Identity: 44%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: 6-phosphogluconate dehydrogenase-like, N-terminal domain

Phyre2