Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA1A5B6
DateWed Jul 10 14:22:24 BST 2013
Unique Job ID90d745b2bd215cf8
SequenceMRPPAQARWE ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.032 Y:53.476 Z:58.118
Model (left) based on template c2g77A_
Top template information
PDB header:hydrolase activator/protein transport
Chain: A: PDB Molecule:gtpase-activating protein gyp1;
PDBTitle: crystal structure of gyp1 tbc domain in complex with rab332 gtpase bound to gdp and alf3
Confidence and coverage
Confidence:100.0% Coverage: 38%
282 residues ( 38% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
460 residues ( 62%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRPPAQARWEGQGPTAPLRLRSGARWGRGRPHCWVYVRVRVTIGYHLDRDDSGGMATTSA
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Disorder  ???????????????



????
???























?????????
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   .........70.........80.........90.........100.........110.........120
Sequence  ASDSACSAAPPPVGGAQAAAAVEEEEREVVRVRVKKCESFLSPEFRSFAVDPQITSLDVL
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Disorder  ???????????????????????????








?
??
?

















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   .........130.........140.........150.........160.........170.........180
Sequence  QHILIRAFDLNGKKNFGISYLARDRLGQETFLSLLSDWDLSTAFATASKPYLQLRVDIRP
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??????????
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   .........190.........200.........210.........220.........230.........240
Sequence  SEDSPLLEDWDIISPKDVIGSDVLLAEKRSSLTTAALPFTQSILSQVGRTLSKVQQVLSW
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Disorder  ????????????????????????????????????????

















??
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   .........250.........260.........270.........280.........290.........300
Sequence  SYGEDVKPFKPPLSDAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYP
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   .........310.........320.........330.........340.........350.........360
Sequence  DGLTGRERMDYMKRKSREYEQLKSEWAQRVNPEDLEFIRSTVLKDVLRTDRAHPYYAGPE
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Disorder  ?
?










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?


























?
??
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   .........370.........380.........390.........400.........410.........420
Sequence  DGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANF
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   .........430.........440.........450.........460.........470.........480
Sequence  HPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRM
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   .........490.........500.........510.........520.........530.........540
Sequence  LEVTWSSLPPDPPEHEVELVGPPSQVADTGFGSHRGRPVRQRHMLRPAGGGGGAFEDAVV
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????????????????
??????????????????
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   .........550.........560.........570.........580.........590.........600
Sequence  HLAASSQGPSGGGRLLRQASLDGLQQLRDNMGLRKDHLVQLSHPATLISSKSLSEPLLNS
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???????????????????????????????????????????????????????
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   .........610.........620.........630.........640.........650.........660
Sequence  PDPLLSTSSRPDSPSSSSPPSTQEASPSGDIAVGSPLMQEVGSPRDPGKPVPPPPPMGLP
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Disorder  ????????????????????????????????????????????????????????????
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   .........670.........680.........690.........700.........710.........720
Sequence  PPQEFGRGNPFMLFLCLAILLEHRDHIMRNGLDYNELAMHFDRLVRKHHLGRVLRRAKAL
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   .........730.........740..
Sequence  FADYLQSEVWDSEEGAEATAPS
Secondary structure 












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Disorder 






??
????????????
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Confidence Key
High(9)                    Low (0)
?Disordered ( 42%)
Alpha helix ( 48%)
Beta strand ( 6%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2g77 chain A

3D model

Region: 256 - 545
Aligned: 282
Modelled: 290
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase activator/protein transport
Chain: A: PDB Molecule:gtpase-activating protein gyp1;
PDBTitle: crystal structure of gyp1 tbc domain in complex with rab332 gtpase bound to gdp and alf3

Phyre2

PDB 2qfz chain B

3D model

Region: 256 - 545
Aligned: 272
Modelled: 290
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase activator
Chain: B: PDB Molecule:tbc1 domain family member 22a;
PDBTitle: crystal structure of human tbc1 domain family member 22a

Phyre2

PDB 4hlq chain E

3D model

Region: 255 - 724
Aligned: 266
Modelled: 269
Confidence: 100.0%
Identity: 27%
PDB header:hydrolase activator/protein transport
Chain: E: PDB Molecule:tbc1 domain family member 20;
PDBTitle: crystal structure of human rab1b bound to gdp and bef3 in complex with2 the gap domain of tbc1d20 from homo sapiens

Phyre2

PDB 2qq8 chain A

3D model

Region: 258 - 720
Aligned: 259
Modelled: 281
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 14;
PDBTitle: crystal structure of the putative rabgap domain of human2 tbc1 domain family member 14

Phyre2

PDB 3qye chain A

3D model

Region: 256 - 502
Aligned: 232
Modelled: 247
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 1;
PDBTitle: crystal structure of human tbc1d1 rabgap domain

Phyre2

PDB 3qyb chain A

3D model

Region: 256 - 501
Aligned: 231
Modelled: 246
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 4;
PDBTitle: x-ray crystal structure of human tbc1d4 (as160) rabgap domain

Phyre2

PDB 1fkm chain A domain 1

3D model

Region: 256 - 422
Aligned: 159
Modelled: 167
Confidence: 100.0%
Identity: 23%
Fold: Left-handed superhelix
Superfamily: Ypt/Rab-GAP domain of gyp1p
Family: Ypt/Rab-GAP domain of gyp1p

Phyre2

PDB 3qwl chain A

3D model

Region: 255 - 502
Aligned: 222
Modelled: 229
Confidence: 100.0%
Identity: 12%
PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 7;
PDBTitle: crystal structure of human tbc1 domain family member 7

Phyre2

PDB 3dzx chain A

3D model

Region: 256 - 501
Aligned: 225
Modelled: 246
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 22b;
PDBTitle: crystal structure of the rabgap domain of human tbc1d22b

Phyre2

PDB 3hzj chain B

3D model

Region: 276 - 501
Aligned: 193
Modelled: 204
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase activator
Chain: B: PDB Molecule:rab gtpase-activating protein 1-like;
PDBTitle: crystal structure of the rabgap domain of the rabgap1l2 protein

Phyre2

PDB 1fkm chain A domain 2

3D model

Region: 423 - 545
Aligned: 120
Modelled: 123
Confidence: 99.6%
Identity: 17%
Fold: Left-handed superhelix
Superfamily: Ypt/Rab-GAP domain of gyp1p
Family: Ypt/Rab-GAP domain of gyp1p

Phyre2

PDB 1wmh chain A

3D model

Region: 91 - 176
Aligned: 78
Modelled: 86
Confidence: 97.9%
Identity: 21%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: CAD & PB1 domains
Family: PB1 domain

Phyre2

PDB 2ktr chain A

3D model

Region: 89 - 179
Aligned: 87
Modelled: 91
Confidence: 97.6%
Identity: 15%
PDB header:signaling protein, transport protein
Chain: A: PDB Molecule:sequestosome-1;
PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs

Phyre2

PDB 2bkf chain A domain 1

3D model

Region: 88 - 176
Aligned: 77
Modelled: 87
Confidence: 97.4%
Identity: 31%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: CAD & PB1 domains
Family: PB1 domain

Phyre2

PDB 1wj6 chain A

3D model

Region: 75 - 185
Aligned: 100
Modelled: 111
Confidence: 97.3%
Identity: 24%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: CAD & PB1 domains
Family: PB1 domain

Phyre2

PDB 1ip9 chain A

3D model

Region: 88 - 173
Aligned: 73
Modelled: 86
Confidence: 96.6%
Identity: 12%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: CAD & PB1 domains
Family: PB1 domain

Phyre2

PDB 1wmh chain B

3D model

Region: 89 - 179
Aligned: 80
Modelled: 91
Confidence: 93.5%
Identity: 29%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: CAD & PB1 domains
Family: PB1 domain

Phyre2

PDB 2i1s chain A domain 1

3D model

Region: 87 - 132
Aligned: 44
Modelled: 46
Confidence: 63.1%
Identity: 14%
Fold: MM3350-like
Superfamily: MM3350-like
Family: MM3350-like

Phyre2

PDB 2c60 chain A

3D model

Region: 90 - 164
Aligned: 60
Modelled: 75
Confidence: 62.9%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:human mitogen-activated protein kinase kinase
PDBTitle: crystal structure of human mitogen-activated protein kinase2 kinase kinase 3 isoform 2 phox domain at 1.25 a resolution

Phyre2

PDB 2c60 chain A domain 1

3D model

Region: 90 - 164
Aligned: 60
Modelled: 75
Confidence: 62.6%
Identity: 22%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: CAD & PB1 domains
Family: PB1 domain

Phyre2
1

c2g77A_
2

c2qfzB_
3

c4hlqE_
4

c2qq8A_
5

c3qyeA_
6

c3qybA_
7

d1fkma1
8

c3qwlA_
9

c3dzxA_
10

c3hzjB_
11

d1fkma2
12

d1wmha_
13

c2ktrA_
14

d2bkfa1
15

d1wj6a_
16

d1ip9a_
17

d1wmhb_
18

d2i1sa1
19

c2c60A_
20

d2c60a1
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2g77A_



100.0 20 PDB header:hydrolase activator/protein transport
Chain: A: PDB Molecule:gtpase-activating protein gyp1;
PDBTitle: crystal structure of gyp1 tbc domain in complex with rab332 gtpase bound to gdp and alf3
2c2qfzB_



100.0 21 PDB header:hydrolase activator
Chain: B: PDB Molecule:tbc1 domain family member 22a;
PDBTitle: crystal structure of human tbc1 domain family member 22a
3c4hlqE_



100.0 27 PDB header:hydrolase activator/protein transport
Chain: E: PDB Molecule:tbc1 domain family member 20;
PDBTitle: crystal structure of human rab1b bound to gdp and bef3 in complex with2 the gap domain of tbc1d20 from homo sapiens
4c2qq8A_



100.0 25 PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 14;
PDBTitle: crystal structure of the putative rabgap domain of human2 tbc1 domain family member 14
5c3qyeA_



100.0 22 PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 1;
PDBTitle: crystal structure of human tbc1d1 rabgap domain
6c3qybA_



100.0 23 PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 4;
PDBTitle: x-ray crystal structure of human tbc1d4 (as160) rabgap domain
7d1fkma1



100.0 23 Fold:Left-handed superhelix
Superfamily:Ypt/Rab-GAP domain of gyp1p
Family:Ypt/Rab-GAP domain of gyp1p
8c3qwlA_



100.0 12 PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 7;
PDBTitle: crystal structure of human tbc1 domain family member 7
9c3dzxA_



100.0 18 PDB header:hydrolase activator
Chain: A: PDB Molecule:tbc1 domain family member 22b;
PDBTitle: crystal structure of the rabgap domain of human tbc1d22b
10c3hzjB_



100.0 24 PDB header:hydrolase activator
Chain: B: PDB Molecule:rab gtpase-activating protein 1-like;
PDBTitle: crystal structure of the rabgap domain of the rabgap1l2 protein
11d1fkma2



99.6 17 Fold:Left-handed superhelix
Superfamily:Ypt/Rab-GAP domain of gyp1p
Family:Ypt/Rab-GAP domain of gyp1p
12d1wmha_



97.9 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
13c2ktrA_



97.6 15 PDB header:signaling protein, transport protein
Chain: A: PDB Molecule:sequestosome-1;
PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs
14d2bkfa1



97.4 31 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
15d1wj6a_



97.3 24 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
16d1ip9a_



96.6 12 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
17d1wmhb_



93.5 29 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
18d2i1sa1



63.1 14 Fold:MM3350-like
Superfamily:MM3350-like
Family:MM3350-like
19c2c60A_



62.9 22 PDB header:transferase
Chain: A: PDB Molecule:human mitogen-activated protein kinase kinase
PDBTitle: crystal structure of human mitogen-activated protein kinase2 kinase kinase 3 isoform 2 phox domain at 1.25 a resolution
20d2c60a1



62.6 22 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
21c4gaoA_



not modelled 61.4 9 PDB header:ligase/peptide
Chain: A: PDB Molecule:dcn1-like protein 2;
PDBTitle: dcnl complex with n-terminally acetylated nedd8 e2 peptide
22d1jhda2



not modelled 55.0 23 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
23d2nptb1



not modelled 54.1 27 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
24d1x6va2



not modelled 47.7 19 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
25c2qjfB_



not modelled 41.8 19 PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-
PDBTitle: crystal structure of atp-sulfurylase domain of human paps2 synthetase 1
26c1jhdA_



not modelled 41.1 23 PDB header:transferase
Chain: A: PDB Molecule:sulfate adenylyltransferase;
PDBTitle: crystal structure of bacterial atp sulfurylase from the2 riftia pachyptila symbiont
27c2wo3B_



not modelled 38.3 24 PDB header:transferase/signaling protein
Chain: B: PDB Molecule:ephrin-a2;
PDBTitle: crystal structure of the epha4-ephrina2 complex
28c3kevA_



not modelled 33.6 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:galieria sulfuraria dcun1 domain-containing protein;
PDBTitle: x-ray crystal structure of a dcun1 domain-containing protein from2 galdieria sulfuraria
29c1xjqA_



not modelled 30.0 19 PDB header:transferase
Chain: A: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: adp complex of human paps synthetase 1
30c2v6zM_



not modelled 28.7 26 PDB header:transferase
Chain: M: PDB Molecule:dna polymerase epsilon subunit 2;
PDBTitle: solution structure of amino terminal domain of human dna2 polymerase epsilon subunit b
31c3riuC_



not modelled 27.5 12 PDB header:hydrolase
Chain: C: PDB Molecule:translin associated factor x, isoform b;
PDBTitle: crystal structure of drosophila hexameric c3po formed by truncated2 translin and trax
32d1u5ta1



not modelled 26.8 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
33c1xnjB_



not modelled 26.7 19 PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: aps complex of human paps synthetase 1
34c2is9A_



not modelled 26.3 7 PDB header:transcription
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: structure of yeast dcn-1
35c2js3B_



not modelled 25.7 60 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein q6n9a4_rhopa. northeast structural genomics2 consortium target rpt8
36d1wgra_



not modelled 25.3 25 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
37d1x87a_



not modelled 25.2 24 Fold:Urocanase
Superfamily:Urocanase
Family:Urocanase
38d1erda_



not modelled 24.3 42 Fold:Protozoan pheromone-like
Superfamily:Protozoan pheromone proteins
Family:Protozoan pheromone proteins
39c1erdA_



not modelled 24.3 42 PDB header:pheromone
Chain: A: PDB Molecule:pheromone er-2;
PDBTitle: the nmr solution structure of the pheromone er-2 from the2 ciliated protozoan euplotes raikovi
40d1pqsa_



not modelled 24.2 25 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
41c2kc1A_



not modelled 23.3 12 PDB header:structural protein
Chain: A: PDB Molecule:mkiaa1027 protein;
PDBTitle: nmr structure of the f0 domain (residues 0-85) of the talin2 ferm domain
42d1gtea5



not modelled 21.8 19 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
43d2cu1a1



not modelled 21.7 25 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
44c4gbaA_



not modelled 20.8 10 PDB header:ligase/peptide
Chain: A: PDB Molecule:dcn1-like protein 3;
PDBTitle: dcnl complex with n-terminally acetylated nedd8 e2 peptide
45c3bq3A_



not modelled 20.1 8 PDB header:cell cycle, ligase
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: crystal structure of s. cerevisiae dcn1
46d1cexa_



not modelled 19.5 18 Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Cutinase-like
47d1g8fa2



not modelled 18.6 31 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
48d1iyjb1



not modelled 18.6 30 Fold:BRCA2 helical domain
Superfamily:BRCA2 helical domain
Family:BRCA2 helical domain
49d1uwka_



not modelled 18.2 14 Fold:Urocanase
Superfamily:Urocanase
Family:Urocanase
50d1zkda1



not modelled 17.8 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:RPA4359-like
51c2rdcA_



not modelled 17.6 24 PDB header:lipid binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative lipid binding protein (gsu0061) from2 geobacter sulfurreducens pca at 1.80 a resolution
52d1m8pa2



not modelled 17.6 28 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
53c2r83B_



not modelled 17.4 19 PDB header:endocytosis, exocytosis
Chain: B: PDB Molecule:synaptotagmin-1;
PDBTitle: crystal structure analysis of human synaptotagmin 1 c2a-c2b
54c4f3nA_



not modelled 17.0 15 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized acr, cog1565 superfamily;
PDBTitle: high resolution native crystal structure of an uncharacterized acr,2 cog1565 superfamily protein from burkholderia thailandensis, solved3 by iodide ion sad
55d1k28a1



not modelled 16.7 41 Fold:OB-fold
Superfamily:gp5 N-terminal domain-like
Family:gp4 N-terminal domain-like
56c2fknC_



not modelled 15.8 17 PDB header:lyase
Chain: C: PDB Molecule:urocanate hydratase;
PDBTitle: crystal structure of urocanase from bacillus subtilis
57d1xsva_



not modelled 15.6 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
58d1v92a_



not modelled 15.4 44 Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
59c2datA_



not modelled 15.4 15 PDB header:transcription
Chain: A: PDB Molecule:possible global transcription activator snf2l2;
PDBTitle: solution structure of the bromodomain of human swi/snf2 related matrix associated actin dependent regulator of3 cromatin subfamily a member 2
60c1sghA_



not modelled 15.4 30 PDB header:structural protein
Chain: A: PDB Molecule:moesin;
PDBTitle: moesin ferm domain bound to ebp50 c-terminal peptide
61c2h89B_



not modelled 15.1 24 PDB header:oxidoreductase
Chain: B: PDB Molecule:succinate dehydrogenase ip subunit;
PDBTitle: avian respiratory complex ii with malonate bound
62c2l92A_



not modelled 14.6 54 PDB header:dna binding protein
Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns;
PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f
63c3rjoA_



not modelled 14.3 10 PDB header:hydrolase
Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1;
PDBTitle: crystal structure of erap1 peptide binding domain
64c2i1jA_



not modelled 14.3 25 PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:moesin;
PDBTitle: moesin from spodoptera frugiperda at 2.1 angstroms resolution
65d1wt8a1



not modelled 13.9 80 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
66c3mzyA_



not modelled 13.4 11 PDB header:rna binding protein
Chain: A: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
67d1n0ea_



not modelled 13.3 13 Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Hypothetical protein MraZ
68c2g0bG_



not modelled 13.2 8 PDB header:transferase
Chain: G: PDB Molecule:feem;
PDBTitle: the structure of feem, an n-acyl amino acid synthase from uncultured2 soil microbes
69c1n0fF_



not modelled 13.2 13 PDB header:biosynthetic protein
Chain: F: PDB Molecule:protein mraz;
PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif
70c3hugA_



not modelled 12.9 16 PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
71c3vpbF_



not modelled 12.9 43 PDB header:ligase
Chain: F: PDB Molecule:alpha-aminoadipate carrier protein lysw;
PDBTitle: argx from sulfolobus tokodaii complexed with2 lysw/glu/adp/mg/zn/sulfate
72c3axjB_



not modelled 11.9 17 PDB header:dna binding protein
Chain: B: PDB Molecule:translin associated factor x, isoform b;
PDBTitle: high resolution crystal structure of c3po
73d3d7ca1



not modelled 11.7 13 Fold:Bromodomain-like
Superfamily:Bromodomain
Family:Bromodomain
74c2j89A_



not modelled 11.6 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases
75c2damA_



not modelled 11.4 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:etea protein;
PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human etea protein
76c3vepA_



not modelled 11.3 19 PDB header:membrane protein/transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-d factor;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
77c3se6A_



not modelled 11.1 14 PDB header:hydrolase
Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 2;
PDBTitle: crystal structure of the human endoplasmic reticulum aminopeptidase 2
78c4f5cA_



not modelled 11.0 11 PDB header:hydrolase/viral protein
Chain: A: PDB Molecule:aminopeptidase n;
PDBTitle: crystal structure of the spike receptor binding domain of a porcine2 respiratory coronavirus in complex with the pig aminopeptidase n3 ectodomain
79c1a6cA_



not modelled 10.9 19 PDB header:virus
Chain: A: PDB Molecule:tobacco ringspot virus capsid protein;
PDBTitle: structure of tobacco ringspot virus
80d1s7oa_



not modelled 10.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
81c1kilE_



not modelled 10.8 57 PDB header:membrane protein
Chain: E: PDB Molecule:complexin i snare-complex binding region;
PDBTitle: three-dimensional structure of the complexin/snare complex
82d2hzaa1



not modelled 10.7 13 Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
83c3qztA_



not modelled 10.6 13 PDB header:transcription/nuclear protein
Chain: A: PDB Molecule:nucleosome-remodeling factor subunit bptf;
PDBTitle: crystal structure of bptf bromo in complex with histone h4k16ac - form2 ii
84c1p0oA_



not modelled 10.5 21 PDB header:ribosome
Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1;
PDBTitle: hp (2-20) substitution of trp for gln and asp at position2 17 and 19 modification in sds-d25 micelles
85c3hzuA_



not modelled 10.5 22 PDB header:transferase
Chain: A: PDB Molecule:thiosulfate sulfurtransferase ssea;
PDBTitle: crystal structure of probable thiosulfate sulfurtransferase ssea2 (rhodanese) from mycobacterium tuberculosis
86c3pilA_



not modelled 10.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form
87d1shxa1



not modelled 9.7 27 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Ephrin ectodomain
88c2x11B_



not modelled 9.7 27 PDB header:receptor/signaling protein
Chain: B: PDB Molecule:ephrin-a5;
PDBTitle: crystal structure of the complete epha2 ectodomain in2 complex with ephrin a5 receptor binding domain
89c2emtB_



not modelled 9.5 30 PDB header:cell adhesion
Chain: B: PDB Molecule:radixin;
PDBTitle: crystal structure analysis of the radixin ferm domain2 complexed with adhesion molecule psgl-1
90c3fmxX_



not modelled 9.5 36 PDB header:oxidoreductase
Chain: X: PDB Molecule:tartrate dehydrogenase/decarboxylase;
PDBTitle: crystal structure of tartrate dehydrogenase from pseudomonas2 putida complexed with nadh
91d1pugb_



not modelled 9.1 22 Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
92c1gg3A_



not modelled 9.1 16 PDB header:membrane protein
Chain: A: PDB Molecule:erythroid membrane protein 4.1r;
PDBTitle: crystal structure of the protein 4.1r membrane binding2 domain
93d1q1oa_



not modelled 8.9 23 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
94d1miua1



not modelled 8.9 31 Fold:BRCA2 helical domain
Superfamily:BRCA2 helical domain
Family:BRCA2 helical domain
95d2f1ka1



not modelled 8.5 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:TyrA dimerization domain-like
96c3zc1E_



not modelled 8.4 13 PDB header:hydrolase
Chain: E: PDB Molecule:aftrax;
PDBTitle: crystal structure of afc3po
97c3nxbB_



not modelled 8.3 11 PDB header:transcription
Chain: B: PDB Molecule:cat eye syndrome critical region protein 2;
PDBTitle: crystal structure of the bromodomain of human cecr2
98d1c20a_



not modelled 8.2 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:ARID-like
Family:ARID domain
99d2c5lc1



not modelled 8.1 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD

Binding site prediction 

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