Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA0PK84
DateWed Jul 10 14:28:08 BST 2013
Unique Job ID8b671c3d7f6075cd
SequenceMLALRLLNVV ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.118 Y:20.584 Z:23.179
Model (left) based on template c3ky9B_
Top template information
PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
Confidence and coverage
Confidence: 84.8% Coverage: 11%
29 residues ( 11% of your sequence) have been modelled with 84.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLALRLLNVVAPAYFLCISLVTFVLQLFLFLPSMREDPTATPLFSPAVLHGALFLFLSAN
Secondary structure 
SS confidence 
Disorder  ??????
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  ALGNYVLVIQNSPDDLGTCQGTMSQRPQCPPPSTHFCRVCSRVTLRHDHHCFFTGNCIGS
Secondary structure 
SS confidence 
Disorder 
???
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  RNMRNFILFCLYTSLACLYSMVAGVAYISAVLSISFAHPLAFLTLLPTSISQFFSGAVLG
Secondary structure 
SS confidence 
Disorder 
???
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  SDMFVILMLYLWFAVGLACAGFCCHQLLLILRGQTRYQVRKGMAVRARPWRKNLQEVFGK
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 
   .........250.........260...
Sequence  RWLLGLLVPMFNVGTESSKQQDK
Secondary structure 
SS confidence 
Disorder 
????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 13%)
Alpha helix ( 61%)
Beta strand ( 6%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3ky9 chain B

3D model

Region: 76 - 104
Aligned: 29
Modelled: 29
Confidence: 84.8%
Identity: 7%
PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1

Phyre2

PDB 2vrw chain B

3D model

Region: 76 - 104
Aligned: 29
Modelled: 29
Confidence: 81.3%
Identity: 7%
PDB header:signaling protein
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor

Phyre2

PDB 3bji chain A

3D model

Region: 76 - 104
Aligned: 29
Modelled: 29
Confidence: 72.9%
Identity: 7%
PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1

Phyre2

PDB 1joc chain A

3D model

Region: 75 - 104
Aligned: 30
Modelled: 30
Confidence: 68.4%
Identity: 13%
PDB header:membrane protein
Chain: A: PDB Molecule:early endosomal autoantigen 1;
PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate

Phyre2

PDB 3zyq chain A

3D model

Region: 78 - 104
Aligned: 27
Modelled: 27
Confidence: 61.3%
Identity: 15%
PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution

Phyre2

PDB 3oky chain A

3D model

Region: 92 - 113
Aligned: 22
Modelled: 22
Confidence: 58.8%
Identity: 23%
PDB header:signaling protein
Chain: A: PDB Molecule:plexin-a2;
PDBTitle: plexin a2 in complex with semaphorin 6a

Phyre2

PDB 1dvp chain A

3D model

Region: 72 - 104
Aligned: 33
Modelled: 33
Confidence: 58.1%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction

Phyre2

PDB 1x4u chain A

3D model

Region: 75 - 104
Aligned: 30
Modelled: 30
Confidence: 53.6%
Identity: 10%
PDB header:lipid binding protein
Chain: A: PDB Molecule:zinc finger, fyve domain containing 27 isoform b;
PDBTitle: solution structure of the fyve domain from human fyve2 domain containing 27 isoform b protein

Phyre2

PDB 2pg3 chain A domain 1

3D model

Region: 89 - 107
Aligned: 19
Modelled: 19
Confidence: 53.5%
Identity: 21%
Fold: Adenine nucleotide alpha hydrolase-like
Superfamily: Adenine nucleotide alpha hydrolases-like
Family: N-type ATP pyrophosphatases

Phyre2

PDB 2yqm chain A

3D model

Region: 75 - 104
Aligned: 30
Modelled: 30
Confidence: 53.5%
Identity: 17%
PDB header:protein transport
Chain: A: PDB Molecule:run and fyve domain-containing protein 1;
PDBTitle: solution structure of the fyve domain in zinc finger fyve2 domain-containing protein 12

Phyre2

PDB 2k2c chain A

3D model

Region: 81 - 112
Aligned: 32
Modelled: 32
Confidence: 50.8%
Identity: 16%
PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger and chy zinc finger domain-
PDBTitle: solution nmr structure of n-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2a

Phyre2

PDB 3al9 chain B

3D model

Region: 92 - 113
Aligned: 22
Modelled: 22
Confidence: 50.4%
Identity: 23%
PDB header:signaling protein
Chain: B: PDB Molecule:plexin-a2;
PDBTitle: mouse plexin a2 extracellular domain

Phyre2

PDB 3al8 chain B

3D model

Region: 92 - 113
Aligned: 22
Modelled: 22
Confidence: 49.0%
Identity: 23%
PDB header:signaling protein
Chain: B: PDB Molecule:plexin-a2;
PDBTitle: plexin a2 / semaphorin 6a complex

Phyre2

PDB 2a20 chain A

3D model

Region: 74 - 104
Aligned: 31
Modelled: 31
Confidence: 47.6%
Identity: 13%
PDB header:metal binding protein
Chain: A: PDB Molecule:regulating synaptic membrane exocytosis protein
PDBTitle: solution structure of rim2 zinc finger domain

Phyre2

PDB 2dkt chain A domain 2

3D model

Region: 83 - 111
Aligned: 29
Modelled: 29
Confidence: 45.0%
Identity: 17%
Fold: Zinc hairpin stack
Superfamily: Zinc hairpin stack
Family: Zinc hairpin stack

Phyre2

PDB 1z2q chain A

3D model

Region: 75 - 104
Aligned: 30
Modelled: 30
Confidence: 44.7%
Identity: 17%
PDB header:membrane protein
Chain: A: PDB Molecule:lm5-1;
PDBTitle: high-resolution solution structure of the lm5-1 fyve domain2 from leishmania major

Phyre2

PDB 1olz chain A domain 3

3D model

Region: 98 - 113
Aligned: 16
Modelled: 16
Confidence: 44.5%
Identity: 25%
Fold: Trefoil/Plexin domain-like
Superfamily: Plexin repeat
Family: Plexin repeat

Phyre2

PDB 3ol2 chain B

3D model

Region: 92 - 113
Aligned: 22
Modelled: 22
Confidence: 43.1%
Identity: 18%
PDB header:signaling protein
Chain: B: PDB Molecule:plexin-b1;
PDBTitle: receptor-ligand structure of human semaphorin 4d with plexin b1.

Phyre2

PDB 1joc chain A domain 1

3D model

Region: 75 - 104
Aligned: 30
Modelled: 30
Confidence: 43.0%
Identity: 13%
Fold: FYVE/PHD zinc finger
Superfamily: FYVE/PHD zinc finger
Family: FYVE, a phosphatidylinositol-3-phosphate binding domain

Phyre2

PDB 3nvn chain B

3D model

Region: 92 - 122
Aligned: 31
Modelled: 31
Confidence: 42.9%
Identity: 19%
PDB header:viral protein/signaling protein
Chain: B: PDB Molecule:plexin-c1;
PDBTitle: molecular mechanism of guidance cue recognition

Phyre2
1
c3ky9B_
2
c2vrwB_
3
c3bjiA_
4
c1jocA_
5
c3zyqA_
6
c3okyA_
7
c1dvpA_
8
c1x4uA_
9
d2pg3a1
10
c2yqmA_
11
c2k2cA_
12
c3al9B_
13
c3al8B_
14
c2a20A_
15
d2dkta2
16
c1z2qA_
17
d1olza3
18
c3ol2B_
19
d1joca1
20
c3nvnB_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
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44
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46
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48
49
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53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ky9B_
84.8 7 PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
2c2vrwB_
81.3 7 PDB header:signaling protein
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor
3c3bjiA_
72.9 7 PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1
4c1jocA_
68.4 13 PDB header:membrane protein
Chain: A: PDB Molecule:early endosomal autoantigen 1;
PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate
5c3zyqA_
61.3 15 PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution
6c3okyA_
58.8 23 PDB header:signaling protein
Chain: A: PDB Molecule:plexin-a2;
PDBTitle: plexin a2 in complex with semaphorin 6a
7c1dvpA_
58.1 18 PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
8c1x4uA_
53.6 10 PDB header:lipid binding protein
Chain: A: PDB Molecule:zinc finger, fyve domain containing 27 isoform b;
PDBTitle: solution structure of the fyve domain from human fyve2 domain containing 27 isoform b protein
9d2pg3a1
53.5 21 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
10c2yqmA_
53.5 17 PDB header:protein transport
Chain: A: PDB Molecule:run and fyve domain-containing protein 1;
PDBTitle: solution structure of the fyve domain in zinc finger fyve2 domain-containing protein 12
11c2k2cA_
50.8 16 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger and chy zinc finger domain-
PDBTitle: solution nmr structure of n-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2a
12c3al9B_
50.4 23 PDB header:signaling protein
Chain: B: PDB Molecule:plexin-a2;
PDBTitle: mouse plexin a2 extracellular domain
13c3al8B_
49.0 23 PDB header:signaling protein
Chain: B: PDB Molecule:plexin-a2;
PDBTitle: plexin a2 / semaphorin 6a complex
14c2a20A_
47.6 13 PDB header:metal binding protein
Chain: A: PDB Molecule:regulating synaptic membrane exocytosis protein
PDBTitle: solution structure of rim2 zinc finger domain
15d2dkta2
45.0 17 Fold:Zinc hairpin stack
Superfamily:Zinc hairpin stack
Family:Zinc hairpin stack
16c1z2qA_
44.7 17 PDB header:membrane protein
Chain: A: PDB Molecule:lm5-1;
PDBTitle: high-resolution solution structure of the lm5-1 fyve domain2 from leishmania major
17d1olza3
44.5 25 Fold:Trefoil/Plexin domain-like
Superfamily:Plexin repeat
Family:Plexin repeat
18c3ol2B_
43.1 18 PDB header:signaling protein
Chain: B: PDB Molecule:plexin-b1;
PDBTitle: receptor-ligand structure of human semaphorin 4d with plexin b1.
19d1joca1
43.0 13 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
20c3nvnB_
42.9 19 PDB header:viral protein/signaling protein
Chain: B: PDB Molecule:plexin-c1;
PDBTitle: molecular mechanism of guidance cue recognition
21c3nvqE_
not modelled 42.8 15 PDB header:signaling protein/protein binding
Chain: E: PDB Molecule:semaphorin-7a;
PDBTitle: molecular mechanism of guidance cue recognition
22d1wfka_
not modelled 42.8 10 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
23c4gz8A_
not modelled 42.1 22 PDB header:signaling protein
Chain: A: PDB Molecule:semaphorin-3a;
PDBTitle: mouse semaphorin 3a, domains sema-psi-ig
24c2uzxB_
not modelled 41.6 12 PDB header:signaling protein/receptor
Chain: B: PDB Molecule:hepatocyte growth factor receptor;
PDBTitle: structure of the human receptor tyrosine kinase met in2 complex with the listeria monocytogenes invasion protein3 inlb: crystal form i
25c2cszA_
not modelled 40.6 15 PDB header:signaling protein
Chain: A: PDB Molecule:synaptotagmin-like protein 4;
PDBTitle: solution structure of the ring domain of the synaptotagmin-2 like protein 4
26c1olzB_
not modelled 40.3 18 PDB header:developmental protein
Chain: B: PDB Molecule:semaphorin 4d;
PDBTitle: the ligand-binding face of the semaphorins revealed by the2 high resolution crystal structure of sema4d
27c3okyB_
not modelled 40.3 19 PDB header:signaling protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: plexin a2 in complex with semaphorin 6a
28d2ayja1
not modelled 39.3 17 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L40e
29c2uzyB_
not modelled 38.7 12 PDB header:signaling protein/receptor
Chain: B: PDB Molecule:hepatocyte growth factor receptor;
PDBTitle: structure of the human receptor tyrosine kinase met in2 complex with the listeria monocytogenes invasion protein3 inlb: low resolution, crystal form ii
30c3oktA_
not modelled 38.4 23 PDB header:signaling protein
Chain: A: PDB Molecule:plexin-a2;
PDBTitle: mouse plexin a2, extracellular domains 1-4
31d2dmda2
not modelled 38.3 43 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
32c3t7lA_
not modelled 38.0 17 PDB header:transport protein
Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 16;
PDBTitle: crystal structure of the fyve domain of endofin (zfyve16) at 1.1a2 resolution
33c4fwwA_
not modelled 37.5 24 PDB header:transferase
Chain: A: PDB Molecule:macrophage-stimulating protein receptor;
PDBTitle: crystal structure of the sema-psi extracellular domains of human ron2 receptor tyrosine kinase
34c3l0aA_
not modelled 37.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:putative exonuclease;
PDBTitle: crystal structure of putative exonuclease (rer070207002219) from2 eubacterium rectale at 2.19 a resolution
35d1njqa_
not modelled 36.8 42 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Plant C2H2 finger (QALGGH zinc finger)
36d1dvpa2
not modelled 35.9 22 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
37c1shyB_
not modelled 34.0 13 PDB header:growth factor/growth factor receptor
Chain: B: PDB Molecule:hepatocyte growth factor receptor;
PDBTitle: the crystal structure of hgf beta-chain in complex with the sema2 domain of the met receptor.
38c2yw8A_
not modelled 32.8 17 PDB header:metal binding protein
Chain: A: PDB Molecule:run and fyve domain-containing protein 1;
PDBTitle: crystal structure of human run and fyve domain-containing2 protein
39d2adra2
not modelled 31.6 38 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
40c1y02A_
not modelled 30.9 9 PDB header:metal binding protein
Chain: A: PDB Molecule:fyve-ring finger protein sakura;
PDBTitle: crystal structure of a fyve-type domain from caspase2 regulator carp2
41d1paaa_
not modelled 30.2 38 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
42c2gb5B_
not modelled 30.1 8 PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
43d1wfla_
not modelled 28.8 14 Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
44d1vfya_
not modelled 28.1 19 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
45c3bl5E_
not modelled 26.0 17 PDB header:hydrolase
Chain: E: PDB Molecule:queuosine biosynthesis protein quec;
PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis
46c3izbP_
not modelled 25.1 56 PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
47d1zbdb_
not modelled 24.9 10 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
48d2fiya1
not modelled 24.6 7 Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
49c3goxB_
not modelled 24.1 13 PDB header:hydrolase/dna
Chain: B: PDB Molecule:restriction endonuclease hpy99i;
PDBTitle: crystal structure of the beta-beta-alpha-me type ii restriction2 endonuclease hpy99i in the absence of edta
50c2cr8A_
not modelled 23.1 22 PDB header:cell cycle
Chain: A: PDB Molecule:mdm4 protein;
PDBTitle: solution structure of the zf-ranbp domain of p53-binding2 protein mdm4
51c3iz6P_
not modelled 22.6 56 PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
52c2ysmA_
not modelled 22.2 18 PDB header:transferase
Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia
PDBTitle: solution structure of the first and second phd domain from2 myeloid/lymphoid or mixed-lineage leukemia protein 33 homolog
53c2c6bA_
not modelled 21.5 17 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase e3 mdm2;
PDBTitle: solution structure of the c4 zinc-finger domain of hdm2
54d1wila_
not modelled 20.9 24 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:variant PHD-like domain
55c3swrA_
not modelled 20.4 17 PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: structure of human dnmt1 (601-1600) in complex with sinefungin
56c3iz5p_
not modelled 20.4 20 PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l15 (l15e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
57d1shyb2
not modelled 19.2 12 Fold:Trefoil/Plexin domain-like
Superfamily:Plexin repeat
Family:Plexin repeat
58c3j21g_
not modelled 18.1 17 PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l7ae;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
59d2it8a1
not modelled 17.6 47 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
60c2it8A_
not modelled 17.6 47 PDB header:plant protein
Chain: A: PDB Molecule:trypsin inhibitor 2;
PDBTitle: solution structure of a linear analog of the cyclic squash2 trypsin inhibitor mcoti-ii
61c2kfqA_
not modelled 17.5 31 PDB header:de novo protein
Chain: A: PDB Molecule:fp1;
PDBTitle: nmr structure of fp1
62c3cezA_
not modelled 17.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase;
PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei
63d1lpva_
not modelled 17.2 29 Fold:Cysteine-rich DNA binding domain, (DM domain)
Superfamily:Cysteine-rich DNA binding domain, (DM domain)
Family:Cysteine-rich DNA binding domain, (DM domain)
64c1lpvA_
not modelled 17.2 29 PDB header:transcription
Chain: A: PDB Molecule:doublesex protein;
PDBTitle: drosophila melanogaster doublesex (dsx), nmr, 18 structures
65c2zetD_
not modelled 17.0 23 PDB header:signaling protein
Chain: D: PDB Molecule:melanophilin;
PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin
66d2epra1
not modelled 16.8 15 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
67c3j3aL_
not modelled 16.6 67 PDB header:ribosome
Chain: L: PDB Molecule:40s ribosomal protein s11;
PDBTitle: structure of the human 40s ribosomal proteins
68c3j20R_
not modelled 16.4 44 PDB header:ribosome
Chain: R: PDB Molecule:30s ribosomal protein s17p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
69c4a1dK_
not modelled 16.4 26 PDB header:ribosome
Chain: K: PDB Molecule:ubiquitin-60s ribosomal protein l40;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4.
70c2xzn5_
not modelled 16.4 29 PDB header:ribosome
Chain: 5: PDB Molecule:ribosomal protein s26e containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
71c1nj3A_
not modelled 16.0 22 PDB header:protein binding
Chain: A: PDB Molecule:npl4;
PDBTitle: structure and ubiquitin interactions of the conserved nzf2 domain of npl4
72c3zeyV_
not modelled 16.0 29 PDB header:ribosome
Chain: V: PDB Molecule:ribosomal protein s26, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
73c3j38a_
not modelled 15.8 21 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
74d2yt9a1
not modelled 15.7 38 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
75c3u5ga_
not modelled 15.6 27 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
76d1ha9a_
not modelled 15.2 47 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
77c3j39m_
not modelled 15.0 21 PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l14;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
78c2po8A_
not modelled 14.9 47 PDB header:plant protein
Chain: A: PDB Molecule:mcoti-ii;
PDBTitle: the structure of a two-disulfide intermediate of mcoti-ii
79c3zeyE_
not modelled 14.7 56 PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal proteins s11, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
80d1fcda3
not modelled 14.5 27 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
81c2eluA_
not modelled 14.5 43 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 5th c2h2 zinc finger of human2 zinc finger protein 406
82d1zu1a2
not modelled 14.4 27 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:HkH motif-containing C2H2 finger
83d1llmc2
not modelled 13.6 28 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
84c3hcjB_
not modelled 13.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form)
85c3bvoA_
not modelled 13.0 21 PDB header:chaperone
Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor;
PDBTitle: crystal structure of human co-chaperone protein hscb
86c2xznQ_
not modelled 12.9 56 PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein s17 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
87c2k8dA_
not modelled 12.7 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb;
PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase
88d2dlqa2
not modelled 12.4 30 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
89c3eh2B_
not modelled 12.4 17 PDB header:protein transport
Chain: B: PDB Molecule:protein transport protein sec24c;
PDBTitle: crystal structure of the human copii-coat protein sec24c
90c2k85A_
not modelled 12.1 4 PDB header:protein binding
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: p190-a rhogap ff1 domain
91d1wg2a_
not modelled 12.1 8 Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
92c3u5gL_
not modelled 11.8 56 PDB header:ribosome
Chain: L: PDB Molecule:40s ribosomal protein s11-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
93d1u85a1
not modelled 11.8 28 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
94c2ljsA_
not modelled 11.6 47 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:trypsin inhibitor 3;
PDBTitle: solution structure of mcoti-v
95c1d4uA_
not modelled 11.4 9 PDB header:dna binding protein
Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd);
PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies
96d1xm0a1
not modelled 11.3 11 Fold:Mss4-like
Superfamily:Mss4-like
Family:SelR domain
97d1l1da_
not modelled 11.1 17 Fold:Mss4-like
Superfamily:Mss4-like
Family:SelR domain
98c2voyK_
not modelled 10.8 15 PDB header:hydrolase
Chain: K: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
99c3pt6B_
not modelled 10.7 17 PDB header:transferase/dna
Chain: B: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: crystal structure of mouse dnmt1(650-1602) in complex with dna

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