Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA0AUP1
DateWed Jul 10 14:15:27 BST 2013
Unique Job IDa3cffe1ada3b8788
SequenceMEKDKHSHFY ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:69.302 Y:41.196 Z:51.373
Model (left) based on template c1bf5A_
Top template information
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: tyrosine phosphorylated stat-1/dna complex
Confidence and coverage
Confidence: 96.5% Coverage: 37%
165 residues ( 37% of your sequence) have been modelled with 96.5% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
420 residues ( 95%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MEKDKHSHFYNQRGDFRTEYNMLEELENKLINSRKTERAKIQQQLAKIHNNVKKLQNQLK
Secondary structure 
SS confidence 
Disorder  ???
??
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DVKPTPDVVEKLREMMEEIENAINTFKEEQRLIYEELIQEEKTTNNELSAVSRRIESWAL
Secondary structure 
SS confidence 
Disorder  ?????
?????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  GNSETEKAFRAISSKVPVDRVTQRTLPEQVVEFEKFLQQTGGRQGGWDALDHQNFVKVRN
Secondary structure 
SS confidence 
Disorder  ?????
??????????????
??????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  KHKGKPTFMKEVVEHLPGRTLDEVQQHEKWYQKFLTLEEKKKESIQNWKTKKQQKKEEIL
Secondary structure 
SS confidence 
Disorder 
????
?????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  KLKEKVDTVPLPSQSKAEDSPKQREEQRKKQKLAVEAWKKRKSLEMSAKLASQLREEEEK
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  ERKQQRERQRQSKLKLLLESYTQQRREQEEFLRLEQEIKEKAEKAEKRKTAADELARFQE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  RDLHKLELKILDRQAKEEEKAEKQRRLTKLKEKVENNVSRDPSRLYKPTKGWEERTKKIG
Secondary structure 
SS confidence 
Disorder 
??
?????
Disorder confidence 
 
   .........430.........440..
Sequence  PSGSGPLLHIPHRAIPTWRQGI
Secondary structure 
SS confidence 
Disorder  ??????????
?
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 18%)
Alpha helix ( 83%)
Beta strand ( 0%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1bf5 chain A

3D model

Region: 4 - 168
Aligned: 165
Modelled: 165
Confidence: 96.5%
Identity: 9%
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: tyrosine phosphorylated stat-1/dna complex

Phyre2

PDB 3cwg chain A

3D model

Region: 4 - 166
Aligned: 161
Modelled: 163
Confidence: 96.2%
Identity: 12%
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment

Phyre2

PDB 1bg1 chain A

3D model

Region: 4 - 175
Aligned: 172
Modelled: 172
Confidence: 94.7%
Identity: 6%
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex

Phyre2

PDB 1cii chain A

3D model

Region: 7 - 425
Aligned: 417
Modelled: 419
Confidence: 90.0%
Identity: 9%
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia

Phyre2

PDB 2efr chain B

3D model

Region: 6 - 160
Aligned: 151
Modelled: 155
Confidence: 87.6%
Identity: 12%
PDB header:contractile protein
Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain;
PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution

Phyre2

PDB 1yvl chain B

3D model

Region: 3 - 174
Aligned: 172
Modelled: 172
Confidence: 86.4%
Identity: 8%
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1

Phyre2

PDB 3o0z chain D

3D model

Region: 1 - 157
Aligned: 157
Modelled: 157
Confidence: 86.4%
Identity: 8%
PDB header:transferase
Chain: D: PDB Molecule:rho-associated protein kinase 1;
PDBTitle: crystal structure of a coiled-coil domain from human rock i

Phyre2

PDB 2d3e chain D

3D model

Region: 4 - 132
Aligned: 129
Modelled: 129
Confidence: 85.5%
Identity: 10%
PDB header:contractile protein
Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1
PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin

Phyre2

PDB 3oja chain B

3D model

Region: 41 - 183
Aligned: 143
Modelled: 143
Confidence: 81.9%
Identity: 10%
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex

Phyre2

PDB 1deq chain F

3D model

Region: 58 - 164
Aligned: 107
Modelled: 107
Confidence: 80.2%
Identity: 10%
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)

Phyre2

PDB 3ol1 chain A

3D model

Region: 14 - 115
Aligned: 102
Modelled: 102
Confidence: 80.2%
Identity: 15%
PDB header:structural protein
Chain: A: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b

Phyre2

PDB 2v71 chain A

3D model

Region: 4 - 157
Aligned: 151
Modelled: 154
Confidence: 79.9%
Identity: 11%
PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear distribution protein nude-like 1;
PDBTitle: coiled-coil region of nudel

Phyre2

PDB 4gkw chain B

3D model

Region: 6 - 153
Aligned: 147
Modelled: 148
Confidence: 77.5%
Identity: 11%
PDB header:structural protein
Chain: B: PDB Molecule:spindle assembly abnormal protein 6;
PDBTitle: crystal structure of the coiled-coil domain of c. elegans sas-6

Phyre2

PDB 3ghg chain K

3D model

Region: 4 - 116
Aligned: 113
Modelled: 113
Confidence: 70.9%
Identity: 14%
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen

Phyre2

PDB 3q8t chain B

3D model

Region: 3 - 93
Aligned: 91
Modelled: 91
Confidence: 70.0%
Identity: 9%
PDB header:apoptosis
Chain: B: PDB Molecule:beclin-1;
PDBTitle: crystal structure of the coiled coil domain of beclin 1, an essential2 autophagy protein

Phyre2

PDB 2fxm chain B

3D model

Region: 3 - 111
Aligned: 109
Modelled: 109
Confidence: 61.0%
Identity: 12%
PDB header:contractile protein
Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform;
PDBTitle: structure of the human beta-myosin s2 fragment

Phyre2

PDB 1ei3 chain C

3D model

Region: 4 - 115
Aligned: 112
Modelled: 112
Confidence: 60.7%
Identity: 11%
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen

Phyre2

PDB 3na7 chain A

3D model

Region: 1 - 166
Aligned: 166
Modelled: 166
Confidence: 53.4%
Identity: 8%
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874

Phyre2

PDB 3tnu chain B

3D model

Region: 2 - 92
Aligned: 91
Modelled: 91
Confidence: 49.1%
Identity: 14%
PDB header:cytosolic protein
Chain: B: PDB Molecule:keratin, type ii cytoskeletal 5;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)

Phyre2

PDB 1ei3 chain E

3D model

Region: 6 - 116
Aligned: 111
Modelled: 111
Confidence: 46.8%
Identity: 11%
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen

Phyre2
1
c1bf5A_
2
c3cwgA_
3
c1bg1A_
4
c1ciiA_
5
c2efrB_
6
c1yvlB_
7
c3o0zD_
8
c2d3eD_
9
c3ojaB_
10
c1deqF_
11
c3ol1A_
12
c2v71A_
13
c4gkwB_
14
c3ghgK_
15
c3q8tB_
16
c2fxmB_
17
c1ei3C_
18
c3na7A_
19
c3tnuB_
20
c1ei3E_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
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91
92
93
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95



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1bf5A_
96.5 9 PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: tyrosine phosphorylated stat-1/dna complex
2c3cwgA_
96.2 12 PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
3c1bg1A_
94.7 6 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex
4c1ciiA_
90.0 9 PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
5c2efrB_
87.6 12 PDB header:contractile protein
Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain;
PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution
6c1yvlB_
86.4 8 PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
7c3o0zD_
86.4 8 PDB header:transferase
Chain: D: PDB Molecule:rho-associated protein kinase 1;
PDBTitle: crystal structure of a coiled-coil domain from human rock i
8c2d3eD_
85.5 10 PDB header:contractile protein
Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1
PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin
9c3ojaB_
81.9 10 PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
10c1deqF_
80.2 10 PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
11c3ol1A_
80.2 15 PDB header:structural protein
Chain: A: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b
12c2v71A_
79.9 11 PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear distribution protein nude-like 1;
PDBTitle: coiled-coil region of nudel
13c4gkwB_
77.5 11 PDB header:structural protein
Chain: B: PDB Molecule:spindle assembly abnormal protein 6;
PDBTitle: crystal structure of the coiled-coil domain of c. elegans sas-6
14c3ghgK_
70.9 14 PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
15c3q8tB_
70.0 9 PDB header:apoptosis
Chain: B: PDB Molecule:beclin-1;
PDBTitle: crystal structure of the coiled coil domain of beclin 1, an essential2 autophagy protein
16c2fxmB_
61.0 12 PDB header:contractile protein
Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform;
PDBTitle: structure of the human beta-myosin s2 fragment
17c1ei3C_
60.7 11 PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
18c3na7A_
53.4 8 PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
19c3tnuB_
49.1 14 PDB header:cytosolic protein
Chain: B: PDB Molecule:keratin, type ii cytoskeletal 5;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)
20c1ei3E_
46.8 11 PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
21c2v66C_
not modelled 44.4 10 PDB header:structural protein
Chain: C: PDB Molecule:nuclear distribution protein nude-like 1;
PDBTitle: crystal structure of the coiled-coil domain of ndel1 (a.a.2 58 to 169)c
22c2gl2B_
not modelled 43.6 14 PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada
23c3u59C_
not modelled 41.1 12 PDB header:contractile protein
Chain: C: PDB Molecule:tropomyosin beta chain;
PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta
24c1jchC_
not modelled 35.5 6 PDB header:ribosome inhibitor, hydrolase
Chain: C: PDB Molecule:colicin e3;
PDBTitle: crystal structure of colicin e3 in complex with its immunity protein
25c4a7fB_
not modelled 35.3 11 PDB header:structural protein/hydrolase
Chain: B: PDB Molecule:tropomyosin 1 alpha;
PDBTitle: structure of the actin-tropomyosin-myosin complex (rigor atm 3)
26c3ghgI_
not modelled 31.1 11 PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
27c3dtpA_
not modelled 26.3 12 PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map
28c3tnuA_
not modelled 22.7 15 PDB header:cytosolic protein
Chain: A: PDB Molecule:keratin, type i cytoskeletal 14;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)
29c1deqO_
not modelled 21.9 9 PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
30c2b9cA_
not modelled 21.1 12 PDB header:contractile protein
Chain: A: PDB Molecule:striated-muscle alpha tropomyosin;
PDBTitle: structure of tropomyosin's mid-region: bending and binding2 sites for actin
31c2xcsD_
not modelled 19.4 38 PDB header:isomerase
Chain: D: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a;
PDBTitle: the 2.1a crystal structure of s. aureus gyrase complex with gsk2994232 and dna
32c3hizB_
not modelled 19.4 11 PDB header:transferase/oncoprotein
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit
PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha
33c4a55B_
not modelled 18.4 12 PDB header:transferase
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha;
PDBTitle: crystal structure of p110alpha in complex with ish2 of p85alpha and2 the inhibitor pik-108
34c1deqD_
not modelled 17.1 9 PDB header:blood clotting
Chain: D: PDB Molecule:fibrinogen (alpha chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
35c2ocyB_
not modelled 16.8 11 PDB header:endocytosis/exocytosis
Chain: B: PDB Molecule:rab guanine nucleotide exchange factor sec2;
PDBTitle: complex of the guanine exchange factor sec2p and the rab2 gtpase sec4p
36c2xkjE_
not modelled 15.7 31 PDB header:isomerase
Chain: E: PDB Molecule:topoisomerase iv;
PDBTitle: crystal structure of catalytic core of a. baumannii topo iv2 (pare-parc fusion truncate)
37c3swkB_
not modelled 15.5 11 PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1b fragment
38c3vkgA_
not modelled 14.7 9 PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of an mtbd truncation mutant of dynein motor domain
39c3hnwB_
not modelled 13.9 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750
40d2axtc1
not modelled 13.6 38 Fold:Photosystem II antenna protein-like
Superfamily:Photosystem II antenna protein-like
Family:Photosystem II antenna protein-like
41c2axtc_
not modelled 13.6 38 PDB header:electron transport
Chain: C: PDB Molecule:photosystem ii cp43 protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
42c1bjtA_
not modelled 12.5 40 PDB header:topoisomerase
Chain: A: PDB Molecule:topoisomerase ii;
PDBTitle: topoisomerase ii residues 409-1201
43d1bjta_
not modelled 12.5 40 Fold:Type II DNA topoisomerase
Superfamily:Type II DNA topoisomerase
Family:Type II DNA topoisomerase
44c3ipkA_
not modelled 12.3 7 PDB header:cell adhesion
Chain: A: PDB Molecule:agi/ii;
PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans
45c2wpqA_
not modelled 12.3 16 PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion)
46c2v1yB_
not modelled 12.1 11 PDB header:transferase
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha;
PDBTitle: structure of a phosphoinositide 3-kinase alpha adaptor-2 binding domain (abd) in a complex with the ish2 domain3 from p85 alpha
47c3qx3B_
not modelled 12.0 40 PDB header:isomerase/dna/isomerase inhibitor
Chain: B: PDB Molecule:dna topoisomerase 2-beta;
PDBTitle: human topoisomerase iibeta in complex with dna and etoposide
48c2rd0B_
not modelled 11.6 13 PDB header:transferase/oncoprotein
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha;
PDBTitle: structure of a human p110alpha/p85alpha complex
49c4fm9A_
not modelled 10.5 40 PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 2-alpha;
PDBTitle: human topoisomerase ii alpha bound to dna
50d1unca_
not modelled 10.0 57 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
51d1yu8x1
not modelled 9.8 43 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
52c2xcqA_
not modelled 9.7 50 PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a;
PDBTitle: the 2.98a crystal structure of the catalytic core (b'a'2 region) of staphylococcus aureus dna gyrase
53d1y0ja1
not modelled 9.6 50 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
54c1c1gA_
not modelled 9.5 8 PDB header:contractile protein
Chain: A: PDB Molecule:tropomyosin;
PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form
55d1unda_
not modelled 9.4 57 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
56c3j21f_
not modelled 9.3 50 PDB header:ribosome
Chain: F: PDB Molecule:50s ribosomal protein l6p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
57c2i1kA_
not modelled 9.3 13 PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:moesin;
PDBTitle: moesin from spodoptera frugiperda reveals the coiled-coil domain at2 3.0 angstrom resolution
58d2vuti1
not modelled 9.0 50 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
59c4dylA_
not modelled 8.8 6 PDB header:transferase
Chain: A: PDB Molecule:tyrosine-protein kinase fes/fps;
PDBTitle: f-bar domain of human fes tyrosine kinase
60c4gfhA_
not modelled 8.8 40 PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 2;
PDBTitle: topoisomerase ii-dna-amppnp complex
61c2ww9O_
not modelled 8.4 50 PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l39;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome
62c2y3aB_
not modelled 8.2 12 PDB header:transferase
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit beta;
PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941
63d1gnfa_
not modelled 8.0 50 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
64c3mstA_
not modelled 7.9 50 PDB header:transport protein
Chain: A: PDB Molecule:putative nitrate transport protein;
PDBTitle: crystal structure of a putative nitrate transport protein (tvn0104)2 from thermoplasma volcanium at 1.35 a resolution
65c3ojaA_
not modelled 7.8 8 PDB header:protein binding
Chain: A: PDB Molecule:leucine-rich immune molecule 1;
PDBTitle: crystal structure of lrim1/apl1c complex
66c2p03A_
not modelled 7.6 7 PDB header:cell adhesion
Chain: A: PDB Molecule:alpha-2-macroglobulin receptor-associated
PDBTitle: the structure of receptor-associated protein(rap)
67c1fosF_
not modelled 7.5 10 PDB header:transcription/dna
Chain: F: PDB Molecule:c-jun proto-oncogene protein;
PDBTitle: two human c-fos:c-jun:dna complexes
68c4a1bB_
not modelled 7.4 50 PDB header:ribosome
Chain: B: PDB Molecule:rpl39;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3.
69c1izlL_
not modelled 7.3 71 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii: subunit psbb;
PDBTitle: crystal structure of photosystem ii
70c1izlB_
not modelled 7.2 71 PDB header:photosynthesis
Chain: B: PDB Molecule:photosystem ii: subunit psbb;
PDBTitle: crystal structure of photosystem ii
71c2pmsD_
not modelled 7.0 15 PDB header:metal transport, hydrolase
Chain: D: PDB Molecule:pneumococcal surface protein a (pspa);
PDBTitle: crystal structure of the complex of human lactoferrin n-lobe and2 lactoferrin-binding domain of pneumococcal surface protein a
72c2qa7C_
not modelled 6.8 9 PDB header:actin binding
Chain: C: PDB Molecule:huntingtin-interacting protein 1;
PDBTitle: crystal structure of huntingtin-interacting protein 12 (hip1) coiled-coil domain with a basic surface suitable3 for hip-protein interactor (hippi)
73c2zkr3_
not modelled 6.8 67 PDB header:ribosomal protein/rna
Chain: 3: PDB Molecule:60s ribosomal protein l39e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
74c3cvfA_
not modelled 6.7 9 PDB header:signaling protein
Chain: A: PDB Molecule:homer protein homolog 3;
PDBTitle: crystal structure of the carboxy terminus of homer3
75c1ci6A_
not modelled 6.6 10 PDB header:transcription
Chain: A: PDB Molecule:transcription factor atf-4;
PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer
76c3izso_
not modelled 6.5 50 PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein rpl28 (l15p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
77c2kaeA_
not modelled 6.4 33 PDB header:transcription/dna
Chain: A: PDB Molecule:gata-type transcription factor;
PDBTitle: data-driven model of med1:dna complex
78c2k6nA_
not modelled 6.4 57 PDB header:structural protein
Chain: A: PDB Molecule:supervillin;
PDBTitle: solution structure of human supervillin headpiece, minimized2 average
79c2no2A_
not modelled 6.4 9 PDB header:cell adhesion
Chain: A: PDB Molecule:huntingtin-interacting protein 1;
PDBTitle: crystal structure of the dllrkn-containing coiled-coil2 domain of huntingtin-interacting protein 1
80c2k2iB_
not modelled 6.3 40 PDB header:cell cycle
Chain: B: PDB Molecule:sfi1 peptide;
PDBTitle: nmr solution structure of the c-terminal domain (t94-y172)2 of the human centrin 2 in complex with a repeat sequence of3 human sfi1 (r641-t660)
81c3nicA_
not modelled 6.2 50 PDB header:hydrolase/dna
Chain: A: PDB Molecule:eco29kir;
PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f
82d2ap3a1
not modelled 6.2 4 Fold:Four-helical up-and-down bundle
Superfamily:MW0975(SA0943)-like
Family:MW0975(SA0943)-like
83c2l3xA_
not modelled 6.2 14 PDB header:protein binding
Chain: A: PDB Molecule:ablim2 protein;
PDBTitle: villin head piece domain of human ablim2
84c3zf7q_
not modelled 6.1 50 PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein l15;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
85c1xr0A_
not modelled 5.9 50 PDB header:signaling protein/growth factor receptor
Chain: A: PDB Molecule:basic fibroblast growth factor receptor 1;
PDBTitle: structural basis of snt ptb domain interactions with2 distinct neurotrophic receptors
86d1qzpa_
not modelled 5.7 14 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
87c2o3oD_
not modelled 5.6 60 PDB header:signaling protein
Chain: D: PDB Molecule:yyci protein;
PDBTitle: crystal structure of the sensor histidine kinase regulator yyci from2 bacillus subtitlis
88c2oexB_
not modelled 5.6 11 PDB header:protein transport
Chain: B: PDB Molecule:programmed cell death 6-interacting protein;
PDBTitle: structure of alix/aip1 v domain
89c3tnfB_
not modelled 5.5 11 PDB header:protein transport
Chain: B: PDB Molecule:lida;
PDBTitle: lida from legionella in complex with active rab8a
90d1yu5x1
not modelled 5.5 43 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
91c1t2kD_
not modelled 5.4 13 PDB header:transcription/dna
Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2;
PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna
92c2wt7B_
not modelled 5.4 15 PDB header:transcription
Chain: B: PDB Molecule:transcription factor mafb;
PDBTitle: crystal structure of the bzip heterodimeric complex2 mafb:cfos bound to dna
93d1jjcb2
not modelled 5.4 25 Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
94c3s4rB_
not modelled 5.2 10 PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1a/1b fragment with a stabilizing2 mutation
95d1ujsa_
not modelled 5.2 14 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain

Binding site prediction 

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