Phyre 2 Results for Q9HCN2

Email	l.a.kelley@imperial.ac.uk
Description	Q9HCN2
Date	Fri May 25 09:44:39 BST 2012
Unique Job ID	cd95d3a0c48e2fc7

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template c3kz5E_

Top template information

PDB header:dna binding protein
Chain: E: PDB Molecule:protein sopb;
PDBTitle: structure of cdomain

Confidence and coverage

Confidence:

13.5%

Coverage:

19%

24 residues ( 19% of your sequence) have been modelled with 13.5% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

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3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M G S S S E A S F R S A Q A S C S G A R R Q G L G R G D Q N L S V M P P N G R A Q T H T P G W V S D P L V L G A Q V H G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ?
?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence G C R G I E A L S V S S G S W S S A T V W I L T G L G L G L S R P F L P G A T V L R D R P L G S A F E L S Y D Q K K A P

Secondary structure

SS confidence

Disorder
? ? ?
? ? ?
?
? ? ?

Disorder confidence

. . . .

Sequence L R L Q

Secondary structure

SS confidence

Disorder ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 3kz5 chain E

Region: 94 - 120
Aligned: 24
Modelled: 27
Confidence: 13.5%
Identity: 46%
PDB header:dna binding protein
Chain: E: PDB Molecule:protein sopb;
PDBTitle: structure of cdomain

Phyre2

PDB 3ij2 chain B

Region: 58 - 66
Aligned: 9
Modelled: 9
Confidence: 6.6%
Identity: 67%
PDB header:hormone/protein binding
Chain: B: PDB Molecule:beta-nerve growth factor;
PDBTitle: ligand-receptor structure

Phyre2

PDB 2w7v chain B

Region: 112 - 124
Aligned: 13
Modelled: 13
Confidence: 6.3%
Identity: 23%
PDB header:transport protein
Chain: B: PDB Molecule:general secretion pathway protein l;
PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus

Phyre2

c3kz5E_

c3ij2B_

c2w7vB_