Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ12888
DateTue Apr 3 15:01:59 BST 2012
Unique Job IDa3d9f9a43ef49ab0

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1kzyD_
Top template information
PDB header:dna binding protein, protein binding
Chain: D: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: crystal structure of the 53bp1 brct region complexed to2 tumor suppressor p53
Confidence and coverage
Confidence:100.0% Coverage: 12%
231 residues ( 12% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
375 residues ( 19%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 89% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDPTGSQLDSDFSQQDTPCLIIEDSQPESQVLEDDSGSHFSMLSRHLPNLQTHKENPVLD
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   .........70.........80.........90.........100.........110.........120
Sequence  VVSNPEQTAGEERGDGNSGFNEHLKENKVADPVDSSNLDTCGSISQVIEQLPQPNRTSSV
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   .........130.........140.........150.........160.........170.........180
Sequence  LGMSVESAPAVEEEKGEELEQKEKEKEEDTSGNTTHSLGAEDTASSQLGFGVLELSQSQD
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   .........190.........200.........210.........220.........230.........240
Sequence  VEENTVPYEVDKEQLQSVTTNSGYTRLSDVDANTAIKHEEQSNEDIPIAEQSSKDIPVTA
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   .........250.........260.........270.........280.........290.........300
Sequence  QPSKDVHVVKEQNPPPARSEDMPFSPKASVAAMEAKEQLSAQELMESGLQIQKSPEPEVL
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   .........310.........320.........330.........340.........350.........360
Sequence  STQEDLFDQSNKTVSSDGCSTPSREEGGCSLASTPATTLHLLQLSGQRSLVQDSLSTNSS
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   .........370.........380.........390.........400.........410.........420
Sequence  DLVAPSPDAFRSTPFIVPSSPTEQEGRQDKPMDTSVLSEEGGEPFQKKLQSGEPVELENP
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   .........430.........440.........450.........460.........470.........480
Sequence  PLLPESTVSPQASTPISQSTPVFPPGSLPIPSQPQFSHDIFIPSPSLEEQSNDGKKDGDM
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   .........490.........500.........510.........520.........530.........540
Sequence  HSSSLTVECSKTSEIEPKNSPEDLGLSLTGDSCKLMLSTSEYSQSPKMESLSSHRIDEDG
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   .........550.........560.........570.........580.........590.........600
Sequence  ENTQIEDTEPMSPVLNSKFVPAENDSILMNPAQDGEVQLSQNDDKTKGDDTDTRDDISIL
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   .........610.........620.........630.........640.........650.........660
Sequence  ATGCKGREETVAEDVCIDLTCDSGSQAVPSPATRSEALSSVLDQEEAMEIKEHHPEEGSS
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   .........670.........680.........690.........700.........710.........720
Sequence  GSEVEEIPETPCESQGEELKEENMESVPLHLSLTETQSQGLCLQKEMPKKECSEAMEVET
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   .........730.........740.........750.........760.........770.........780
Sequence  SVISIDSPQKLAILDQELEHKEQEAWEEATSEDSSVVIVDVKEPSPRVDVSCEPLEGVEK
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   .........790.........800.........810.........820.........830.........840
Sequence  CSDSQSWEDIAPEIEPCAENRLDTKEEKSVEYEGDLKSGTAETEPVEQDSSQPSLPLVRA
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   .........850.........860.........870.........880.........890.........900
Sequence  DDPLRLDQELQQPQTQEKTSNSLTEDSKMANAKQLSSDAEAQKLGKPSAHASQSFCESSS
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   .........910.........920.........930.........940.........950.........960
Sequence  ETPFHFTLPKEGDIIPPLTGATPPLIGHLKLEPKRHSTPIGISNYPESTIATSDVMSESM
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  VETHDPILGSGKGDSGAAPDVDDKLCLRMKLVSPETEASEESLQFNLEKPATGERKNGST
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  AVAESVASPQKTMSVLSCICEARQENEARSEDPPTTPIRGNLLHFPSSQGEEEKEKLEGD
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  HTIRQSQQPMKPISPVKDPVSPASQKMVIQGPSSPQGEAMVTDVLEDQKEGRSTNKENPS
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  KALIERPSQNNIGIQTMECSLRVPETVSAATQTIKNVCEQGTSTVDQNFGKQDATVQTER
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHRHMRTIREVRTLVTRVITDVYYV
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?
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  DGTEVERKVTEETEEPIVECQECETEVSPSQTGGSSGDLGDISSFSSKASSLHRTSSGTS
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  LSAMHSSGSSGKGAGPLRGKTSGTEPADFALPSSRGGPGKLSPRKGVSQTGTPVCEEDGD
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   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  AGLGIRQGGKAPVTPRGRGRRGRPPSRTTGTRETAVPGPLGIEDISPNLSPDDKSFSRVV
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   .........1450.........1460.........1470.........1480.........1490.........1500
Sequence  PRVPDSTRRTDVGAGALRRSDSPEIPFQAAAGPSDGLDASSPGNSFVGLRVVAKWSSNGY
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   .........1510.........1520.........1530.........1540.........1550.........1560
Sequence  FYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKG
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   .........1570.........1580.........1590.........1600.........1610.........1620
Sequence  HRKESGELYYSIEKEGQRKWYKRMAVILSLEQGNRLREQYGLGPYEAVTPLTKAADISLD
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   .........1630.........1640.........1650.........1660.........1670.........1680
Sequence  NLVEGKRKRRSNVSSPATPTASSSSSTTPTRKITESPRASMGVLSGKRKLITSEEERSPA
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   .........1690.........1700.........1710.........1720.........1730.........1740
Sequence  KRGRKSATVKPGAVGAGEFVSPCESGDNTGEPSALEEQRGPLPLNKTLFLGYAFLLTMAT
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   .........1750.........1760.........1770.........1780.........1790.........1800
Sequence  TSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAY
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Disorder  ???????
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   .........1810.........1820.........1830.........1840.........1850.........1860
Sequence  QCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSLEEQRIL
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   .........1870.........1880.........1890.........1900.........1910.........1920
Sequence  DWQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVV
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   .........1930.........1940.........1950.........1960.........1970..
Sequence  VTDPSCPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQHPKYKHDYVSH
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1kzy chain D

3D model

Region: 1715 - 1972
Aligned: 231
Modelled: 231
Confidence: 100.0%
Identity: 100%
PDB header:dna binding protein, protein binding
Chain: D: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: crystal structure of the 53bp1 brct region complexed to2 tumor suppressor p53

Phyre2

PDB 1kzy chain C domain 2

3D model

Region: 1867 - 1972
Aligned: 106
Modelled: 106
Confidence: 100.0%
Identity: 100%
Fold: BRCT domain
Superfamily: BRCT domain
Family: 53BP1

Phyre2

PDB 2vxc chain A

3D model

Region: 1728 - 1958
Aligned: 185
Modelled: 188
Confidence: 100.0%
Identity: 24%
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9;
PDBTitle: structure of the crb2-brct2 domain complex with2 phosphopeptide.

Phyre2

PDB 1kzy chain C domain 1

3D model

Region: 1715 - 1866
Aligned: 125
Modelled: 125
Confidence: 100.0%
Identity: 100%
Fold: BRCT domain
Superfamily: BRCT domain
Family: 53BP1

Phyre2

PDB 1xni chain I

3D model

Region: 1485 - 1602
Aligned: 118
Modelled: 118
Confidence: 99.9%
Identity: 100%
PDB header:cell cycle
Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: tandem tudor domain of 53bp1

Phyre2

PDB 3l40 chain A

3D model

Region: 1724 - 1960
Aligned: 197
Modelled: 205
Confidence: 99.9%
Identity: 17%
PDB header:cell cycle
Chain: A: PDB Molecule:brct-containing protein 1;
PDBTitle: crystal structure of s. pombe brc1 brct5-brct6 domains

Phyre2

PDB 2azm chain B

3D model

Region: 1771 - 1962
Aligned: 175
Modelled: 192
Confidence: 99.9%
Identity: 20%
PDB header:cell cycle
Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1;
PDBTitle: crystal structure of the mdc1 brct repeat in complex with2 the histone tail of gamma-h2ax

Phyre2

PDB 1ssf chain A

3D model

Region: 1484 - 1606
Aligned: 123
Modelled: 123
Confidence: 99.9%
Identity: 100%
PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)

Phyre2

PDB 3al3 chain A

3D model

Region: 1772 - 1962
Aligned: 175
Modelled: 189
Confidence: 99.9%
Identity: 19%
PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of topbp1 brct7/8-bach1 peptide complex

Phyre2

PDB 3t1n chain A

3D model

Region: 1772 - 1960
Aligned: 166
Modelled: 188
Confidence: 99.9%
Identity: 16%
PDB header:cell cycle/peptide
Chain: A: PDB Molecule:microcephalin;
PDBTitle: structure of human microcephalin (mcph1) tandem brct domains in2 complex with a cdc27 phosphopeptide

Phyre2

PDB 2r1z chain B

3D model

Region: 1772 - 1960
Aligned: 180
Modelled: 180
Confidence: 99.8%
Identity: 13%
PDB header:antitumor protein
Chain: B: PDB Molecule:brca1-associated ring domain protein 1;
PDBTitle: crystal structure of the bard1 brct repeat

Phyre2

PDB 1z56 chain C

3D model

Region: 1727 - 1960
Aligned: 197
Modelled: 216
Confidence: 99.8%
Identity: 16%
PDB header:ligase
Chain: C: PDB Molecule:dna ligase iv;
PDBTitle: co-crystal structure of lif1p-lig4p

Phyre2

PDB 1y98 chain A

3D model

Region: 1772 - 1962
Aligned: 184
Modelled: 191
Confidence: 99.8%
Identity: 17%
PDB header:antitumor protein
Chain: A: PDB Molecule:breast cancer type 1 susceptibility protein;
PDBTitle: structure of the brct repeats of brca1 bound to a ctip2 phosphopeptide.

Phyre2

PDB 1l0b chain A

3D model

Region: 1772 - 1960
Aligned: 162
Modelled: 169
Confidence: 99.8%
Identity: 19%
PDB header:unknown function
Chain: A: PDB Molecule:brca1;
PDBTitle: crystal structure of rat brca1 tandem-brct region

Phyre2

PDB 2xnk chain A

3D model

Region: 1772 - 1960
Aligned: 161
Modelled: 189
Confidence: 99.8%
Identity: 12%
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: structure and function of the rad9-binding region of the dna damage2 checkpoint adaptor topbp1

Phyre2

PDB 3ii6 chain Y

3D model

Region: 1727 - 1962
Aligned: 189
Modelled: 208
Confidence: 99.8%
Identity: 18%
PDB header:ligase/dna binding protein
Chain: Y: PDB Molecule:dna ligase 4;
PDBTitle: structure of human xrcc4 in complex with the tandem brct2 domains of dna ligaseiv.

Phyre2

PDB 2g3r chain A domain 2

3D model

Region: 1538 - 1603
Aligned: 66
Modelled: 66
Confidence: 99.6%
Identity: 100%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: Tudor domain

Phyre2

PDB 3t7k chain B

3D model

Region: 1778 - 1968
Aligned: 183
Modelled: 191
Confidence: 99.6%
Identity: 13%
PDB header:protein binding
Chain: B: PDB Molecule:regulator of ty1 transposition protein 107;
PDBTitle: complex structure of rtt107p and phosphorylated histone h2a

Phyre2

PDB 2g3r chain A domain 1

3D model

Region: 1485 - 1537
Aligned: 53
Modelled: 53
Confidence: 99.6%
Identity: 100%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: Tudor domain

Phyre2

PDB 2d8m chain A

3D model

Region: 1707 - 1850
Aligned: 108
Modelled: 115
Confidence: 99.3%
Identity: 21%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-repair protein xrcc1;
PDBTitle: solution structure of the first brct domain of dna-repair2 protein xrcc1

Phyre2

PDB 2fhd chain A

3D model

Region: 1489 - 1631
Aligned: 120
Modelled: 117
Confidence: 98.6%
Identity: 20%
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9/crb2;
PDBTitle: crystal structure of crb2 tandem tudor domains

Phyre2

PDB 1wjq chain A

3D model

Region: 1474 - 1521
Aligned: 47
Modelled: 47
Confidence: 52.8%
Identity: 17%
Fold: SH3-like barrel
Superfamily: Tudor/PWWP/MBT
Family: MBT repeat

Phyre2
1

c1kzyD_
2

d1kzyc2
3

c2vxcA_
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d1kzyc1
5

c1xniI_
6

c3l40A_
7

c2azmB_
8

c1ssfA_
9

c3al3A_
10

c3t1nA_
11

c2r1zB_
12

c1z56C_
13

c1y98A_
14

c1l0bA_
15

c2xnkA_
16

c3ii6Y_
17

d2g3ra2
18

c3t7kB_
19

d2g3ra1
20

c2d8mA_
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c2fhdA_
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d1wjqa_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1kzyD_



100.0 100 PDB header:dna binding protein, protein binding
Chain: D: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: crystal structure of the 53bp1 brct region complexed to2 tumor suppressor p53
2d1kzyc2



100.0 100 Fold:BRCT domain
Superfamily:BRCT domain
Family:53BP1
3c2vxcA_



100.0 24 PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9;
PDBTitle: structure of the crb2-brct2 domain complex with2 phosphopeptide.
4d1kzyc1



100.0 100 Fold:BRCT domain
Superfamily:BRCT domain
Family:53BP1
5c1xniI_



99.9 100 PDB header:cell cycle
Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: tandem tudor domain of 53bp1
6c3l40A_



99.9 17 PDB header:cell cycle
Chain: A: PDB Molecule:brct-containing protein 1;
PDBTitle: crystal structure of s. pombe brc1 brct5-brct6 domains
7c2azmB_



99.9 20 PDB header:cell cycle
Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1;
PDBTitle: crystal structure of the mdc1 brct repeat in complex with2 the histone tail of gamma-h2ax
8c1ssfA_



99.9 100 PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
9c3al3A_



99.9 19 PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of topbp1 brct7/8-bach1 peptide complex
10c3t1nA_



99.9 16 PDB header:cell cycle/peptide
Chain: A: PDB Molecule:microcephalin;
PDBTitle: structure of human microcephalin (mcph1) tandem brct domains in2 complex with a cdc27 phosphopeptide
11c2r1zB_



99.8 13 PDB header:antitumor protein
Chain: B: PDB Molecule:brca1-associated ring domain protein 1;
PDBTitle: crystal structure of the bard1 brct repeat
12c1z56C_



99.8 16 PDB header:ligase
Chain: C: PDB Molecule:dna ligase iv;
PDBTitle: co-crystal structure of lif1p-lig4p
13c1y98A_



99.8 17 PDB header:antitumor protein
Chain: A: PDB Molecule:breast cancer type 1 susceptibility protein;
PDBTitle: structure of the brct repeats of brca1 bound to a ctip2 phosphopeptide.
14c1l0bA_



99.8 19 PDB header:unknown function
Chain: A: PDB Molecule:brca1;
PDBTitle: crystal structure of rat brca1 tandem-brct region
15c2xnkA_



99.8 12 PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: structure and function of the rad9-binding region of the dna damage2 checkpoint adaptor topbp1
16c3ii6Y_



99.8 18 PDB header:ligase/dna binding protein
Chain: Y: PDB Molecule:dna ligase 4;
PDBTitle: structure of human xrcc4 in complex with the tandem brct2 domains of dna ligaseiv.
17d2g3ra2



99.6 100 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
18c3t7kB_



99.6 13 PDB header:protein binding
Chain: B: PDB Molecule:regulator of ty1 transposition protein 107;
PDBTitle: complex structure of rtt107p and phosphorylated histone h2a
19d2g3ra1



99.6 100 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
20c2d8mA_



99.3 21 PDB header:dna binding protein
Chain: A: PDB Molecule:dna-repair protein xrcc1;
PDBTitle: solution structure of the first brct domain of dna-repair2 protein xrcc1
21d1t15a2



not modelled 99.2 19 Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
22d1wf6a_



not modelled 99.1 16 Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA topoisomerase II binding protein 1, TopBP1
23c2qqsB_



not modelled 99.0 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation
PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide
24c2e2wA_



not modelled 99.0 19 PDB header:ligase
Chain: A: PDB Molecule:dna ligase 4;
PDBTitle: solution structure of the first brct domain of human dna2 ligase iv
25d1l0ba1



not modelled 99.0 28 Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
26c2xdpA_



not modelled 98.9 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 4c;
PDBTitle: crystal structure of the tudor domain of human jmjd2c
27d1t15a1



not modelled 98.9 24 Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
28c3dlmA_



not modelled 98.9 21 PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1;
PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1
29c2couA_



not modelled 98.8 19 PDB header:cell cycle
Chain: A: PDB Molecule:ect2 protein;
PDBTitle: solution structure of the second brct domain of epithelial2 cell transforming 2
30c2ebwA_



not modelled 98.8 18 PDB header:transferase
Chain: A: PDB Molecule:dna repair protein rev1;
PDBTitle: solution structure of the brct domain from human dna repair2 protein rev1
31c3l3eA_



not modelled 98.8 18 PDB header:cell cycle
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of the sixth brct domain of human topbp1
32d1cdza_



not modelled 98.8 19 Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA-repair protein XRCC1
33c3ktfB_



not modelled 98.8 15 PDB header:cell cycle
Chain: B: PDB Molecule:microcephalin;
PDBTitle: structure of the n-terminal brct domain of human2 microcephalin (mcph1).
34c2ep8A_



not modelled 98.7 29 PDB header:cell cycle
Chain: A: PDB Molecule:pescadillo homolog 1;
PDBTitle: solution structure of the brct domain from human pescadillo2 homolog 1
35c3ef1A_



not modelled 98.6 21 PDB header:hydrolase
Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain
PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd2 phosphatase
36c2cokA_



not modelled 98.6 16 PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1;
PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1
37c3ef0A_



not modelled 98.6 22 PDB header:hydrolase
Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain
PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd2 phosphatase
38c2fhdA_



98.6 20 PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9/crb2;
PDBTitle: crystal structure of crb2 tandem tudor domains
39c2jw5A_



not modelled 98.5 11 PDB header:protein binding
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: polymerase lambda brct domain
40c3qiiA_



not modelled 98.4 31 PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
41c2equA_



not modelled 98.4 27 PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
42d1l0ba2



not modelled 98.2 26 Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
43c3p8dB_



not modelled 98.1 29 PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
44c2ebuA_



not modelled 98.1 16 PDB header:replication
Chain: A: PDB Molecule:replication factor c subunit 1;
PDBTitle: solution structure of the brct domain from human2 replication factor c large subunit 1
45c2dunA_



not modelled 98.0 17 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: solution structure of brct domain of dna polymerase mu
46d1l7ba_



not modelled 97.7 16 Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA ligase
47d1in1a_



not modelled 97.7 18 Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA ligase
48c2coeA_



not modelled 97.4 17 PDB header:transferase
Chain: A: PDB Molecule:deoxynucleotidyltransferase, terminal variant;
PDBTitle: solution structure of brct domain of terminal2 deoxynucleotidyltransferase
49c2l42A_



not modelled 97.2 22 PDB header:protein binding
Chain: A: PDB Molecule:dna-binding protein rap1;
PDBTitle: the solution structure of rap1 brct domain from saccharomyces2 cerevisiae
50c2e5qA_



not modelled 97.1 31 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 19;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens]
51c2e5pA_



not modelled 97.1 34 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein)
52c2eqjA_



not modelled 97.0 36 PDB header:transcription
Chain: A: PDB Molecule:metal-response element-binding transcription
PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2
53c2xk0A_



not modelled 96.3 22 PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
54c4a4fA_



not modelled 95.7 25 PDB header:rna binding protein
Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30;
PDBTitle: solution structure of spf30 tudor domain in complex with2 symmetrically dimethylated arginine
55d1mhna_



not modelled 95.1 26 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
56c1g5vA_



not modelled 94.8 26 PDB header:translation
Chain: A: PDB Molecule:survival motor neuron protein 1;
PDBTitle: solution structure of the tudor domain of the human smn2 protein
57d2diga1



not modelled 94.7 27 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
58d1qo0d_



not modelled 94.6 16 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Positive regulator of the amidase operon AmiR
59c3mmnA_



not modelled 94.0 22 PDB header:transferase
Chain: A: PDB Molecule:histidine kinase homolog;
PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
60c2d9tA_



not modelled 93.9 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: solution structure of the tudor domain of tudor domain2 containing protein 3 from mouse
61d2d9ta1



not modelled 93.5 21 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
62c3pnwX_



not modelled 93.2 21 PDB header:protein binding/immune system
Chain: X: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: crystal structure of the tudor domain of human tdrd3 in complex with2 an anti-tdrd3 fab
63c3metB_



not modelled 93.0 22 PDB header:transcription
Chain: B: PDB Molecule:saga-associated factor 29 homolog;
PDBTitle: crystal structure of sgf29 in complex with h3k4me2
64c2rjnA_



not modelled 92.8 20 PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
65c4dadA_



not modelled 92.5 17 PDB header:signaling protein, signal transduction
Chain: A: PDB Molecule:putative pilus assembly-related protein;
PDBTitle: crystal structure of a putative pilus assembly-related protein2 (bpss2195) from burkholderia pseudomallei k96243 at 2.50 a resolution
66c3snkA_



not modelled 92.1 19 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
67c1a2oB_



not modelled 91.7 22 PDB header:bacterial chemotaxis
Chain: B: PDB Molecule:cheb methylesterase;
PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain
68c2ayxA_



not modelled 90.8 17 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
69c3izbA_



not modelled 90.1 23 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
70d2qqra1



not modelled 89.4 36 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
71c1ny5A_



not modelled 89.2 24 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
72c3r0jA_



not modelled 88.8 26 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
73c2hqrA_



not modelled 88.7 15 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
74c2zwmA_



not modelled 88.7 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
75d2diqa1



not modelled 88.3 29 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
76d2hqxa1



not modelled 88.2 17 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
77c2hqxB_



not modelled 88.2 17 PDB header:transcription
Chain: B: PDB Molecule:p100 co-activator tudor domain;
PDBTitle: crystal structure of human p100 tudor domain conserved2 region
78c3cz5B_



not modelled 87.6 15 PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
79d2qqra2



not modelled 87.2 27 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
80c3f6cB_



not modelled 86.8 13 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
81c3eodA_



not modelled 86.5 22 PDB header:signaling protein
Chain: A: PDB Molecule:protein hnr;
PDBTitle: crystal structure of n-terminal domain of e. coli rssb
82d2qqsa2



not modelled 86.3 26 Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
83d1jbea_



not modelled 86.3 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
84c3hv2B_



not modelled 85.7 18 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
85d1kgsa2



not modelled 85.5 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
86c3pdiB_



not modelled 85.3 18 PDB header:protein binding
Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn;
PDBTitle: precursor bound nifen
87d1qkka_



not modelled 84.8 16 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
88d2b4aa1



not modelled 84.7 23 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
89c3nhzA_



not modelled 84.2 20 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
90c3mp6A_



not modelled 84.0 24 PDB header:histone binding protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga-
PDBTitle: complex structure of sgf29 and dimethylated h3k4
91c1s1hB_



not modelled 83.9 23 PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
92d1dcfa_



not modelled 83.6 21 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Receiver domain of the ethylene receptor
93c2hqoA_



not modelled 81.9 15 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
94d1vmda_



not modelled 81.7 21 Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Methylglyoxal synthase, MgsA
95c2rdmB_



not modelled 81.6 25 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
96d1heya_



not modelled 81.5 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
97c3t8yA_



not modelled 81.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
98c1w25B_



not modelled 81.3 23 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
99d1xhfa1



not modelled 81.3 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
100c3hn7A_



not modelled 81.0 14 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution
101c3h1gA_



not modelled 80.6 22 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein chey homolog;
PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori
102d1s8na_



not modelled 80.6 22 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
103c3n0rA_



not modelled 80.3 12 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution
104c2ef0A_



not modelled 80.2 17 PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase from thermus2 thermophilus
105c1zn2A_



not modelled 80.0 19 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
106d1ny5a1



not modelled 79.2 25 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
107d1wgsa_



not modelled 79.2 11 Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo barrel domain
108d2ayxa1



not modelled 79.1 18 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
109c3dzdA_



not modelled 79.1 21 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
110c2j48A_



not modelled 78.7 16 PDB header:transferase
Chain: A: PDB Molecule:two-component sensor kinase;
PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein.
111c2xznB_



not modelled 78.3 17 PDB header:ribosome
Chain: B: PDB Molecule:rps0e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
112c1kgsA_



not modelled 78.1 25 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
113c3grcD_



not modelled 77.4 20 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
114d1a2oa1



not modelled 76.3 20 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
115d1zgza1



not modelled 76.1 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
116c2wacA_



not modelled 76.0 22 PDB header:splicing
Chain: A: PDB Molecule:cg7008-pa;
PDBTitle: extended tudor domain of drosophila melanogaster tudor-sn (2 p100)
117c3c3wB_



not modelled 75.1 25 PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
118d1dbwa_



not modelled 73.9 19 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
119c3a0rB_



not modelled 73.8 28 PDB header:transferase
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
120c2eqkA_



not modelled 73.7 21 PDB header:transcription
Chain: A: PDB Molecule:tudor domain-containing protein 4;
PDBTitle: solution structure of the tudor domain of tudor domain-2 containing protein 4

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