Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP04637
DateFri May 25 09:44:00 BST 2012
Unique Job IDf7d6c648a45c66f5

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2rmnA_
Top template information
PDB header:cell cycle, antitumor protein
Chain: A: PDB Molecule:tumor protein 63;
PDBTitle: the solution structure of the p63 dna-binding domain
Confidence and coverage
Confidence:100.0% Coverage: 57%
224 residues ( 57% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
330 residues ( 84%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGP
Secondary structure 
SS confidence 
Disorder  ??????????????
???????????????????
????
??????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAK
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????
??????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  SVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE
Secondary structure 
SS confidence 
Disorder  ?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  RCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNS
Secondary structure 
SS confidence 
Disorder  ????????
???
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  SCMGGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENLRKKGEPHHELP
Secondary structure 
SS confidence 
Disorder 
??????
???
???????????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  PGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG
Secondary structure 
SS confidence 
Disorder  ?????????????????????????
?????????????
Disorder confidence 
 
   .........370.........380.........390...
Sequence  GSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
Secondary structure 
SS confidence 
Disorder  ?????????????????????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2rmn chain A

3D model

Region: 84 - 307
Aligned: 224
Modelled: 224
Confidence: 100.0%
Identity: 50%
PDB header:cell cycle, antitumor protein
Chain: A: PDB Molecule:tumor protein 63;
PDBTitle: the solution structure of the p63 dna-binding domain

Phyre2

PDB 2j1x chain A

3D model

Region: 96 - 290
Aligned: 195
Modelled: 195
Confidence: 100.0%
Identity: 97%
PDB header:nuclear protein
Chain: A: PDB Molecule:cellular tumor antigen p53;
PDBTitle: human p53 core domain mutant m133l-v203a-y220c-n239y-n268d

Phyre2

PDB 2ac0 chain A domain 1

3D model

Region: 96 - 289
Aligned: 194
Modelled: 194
Confidence: 100.0%
Identity: 100%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: p53-like transcription factors
Family: p53 DNA-binding domain-like

Phyre2

PDB 2xip chain A

3D model

Region: 94 - 295
Aligned: 199
Modelled: 202
Confidence: 100.0%
Identity: 56%
PDB header:cell cycle
Chain: A: PDB Molecule:tumour protein p73;
PDBTitle: crystal structure of the dna binding domain of human tp732 refined at 1.8 a resolution

Phyre2

PDB 1hu8 chain A

3D model

Region: 102 - 287
Aligned: 186
Modelled: 186
Confidence: 100.0%
Identity: 89%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: p53-like transcription factors
Family: p53 DNA-binding domain-like

Phyre2

PDB 4a9z chain D

3D model

Region: 324 - 363
Aligned: 40
Modelled: 40
Confidence: 99.2%
Identity: 35%
PDB header:transcription
Chain: D: PDB Molecule:tumor protein 63;
PDBTitle: crystal structure of human p63 tetramerization domain

Phyre2

PDB 3zy1 chain A

3D model

Region: 325 - 363
Aligned: 39
Modelled: 39
Confidence: 99.1%
Identity: 33%
PDB header:transcription
Chain: A: PDB Molecule:tumor protein 63;
PDBTitle: crystal structure of the human p63 tetramerization domain

Phyre2

PDB 3sak chain A

3D model

Region: 319 - 360
Aligned: 42
Modelled: 42
Confidence: 99.0%
Identity: 100%
Fold: p53 tetramerization domain
Superfamily: p53 tetramerization domain
Family: p53 tetramerization domain

Phyre2

PDB 2wtt chain L

3D model

Region: 326 - 359
Aligned: 34
Modelled: 34
Confidence: 99.0%
Identity: 38%
PDB header:transcription
Chain: L: PDB Molecule:tumor protein p73;
PDBTitle: structure of the human p73 tetramerization domain (crystal2 form ii)

Phyre2

PDB 2k8f chain B

3D model

Region: 1 - 39
Aligned: 39
Modelled: 39
Confidence: 98.8%
Identity: 100%
PDB header:transferase/transcription
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: structural basis for the regulation of p53 function by p300

Phyre2

PDB 2wqj chain M

3D model

Region: 326 - 352
Aligned: 27
Modelled: 27
Confidence: 98.4%
Identity: 48%
PDB header:transcription
Chain: M: PDB Molecule:tumor protein p73;
PDBTitle: crystal structure of a truncated variant of the human p732 tetramerization domain

Phyre2

PDB 1t4w chain A

3D model

Region: 125 - 284
Aligned: 152
Modelled: 160
Confidence: 98.3%
Identity: 17%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: p53-like transcription factors
Family: p53 DNA-binding domain-like

Phyre2

PDB 2l14 chain B

3D model

Region: 13 - 61
Aligned: 49
Modelled: 49
Confidence: 98.3%
Identity: 100%
PDB header:protein binding
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: structure of cbp nuclear coactivator binding domain in complex with2 p53 tad

Phyre2

PDB 1hs5 chain A

3D model

Region: 324 - 357
Aligned: 34
Modelled: 34
Confidence: 98.2%
Identity: 94%
Fold: p53 tetramerization domain
Superfamily: p53 tetramerization domain
Family: p53 tetramerization domain

Phyre2

PDB 1aie chain A

3D model

Region: 326 - 356
Aligned: 31
Modelled: 31
Confidence: 98.1%
Identity: 100%
Fold: p53 tetramerization domain
Superfamily: p53 tetramerization domain
Family: p53 tetramerization domain

Phyre2

PDB 2j10 chain A

3D model

Region: 326 - 356
Aligned: 31
Modelled: 31
Confidence: 98.0%
Identity: 94%
PDB header:transcription
Chain: A: PDB Molecule:cellular tumor antigen p53;
PDBTitle: p53 tetramerization domain mutant t329f q331k

Phyre2

PDB 2j10 chain D

3D model

Region: 326 - 356
Aligned: 31
Modelled: 31
Confidence: 98.0%
Identity: 94%
PDB header:transcription
Chain: D: PDB Molecule:cellular tumor antigen p53;
PDBTitle: p53 tetramerization domain mutant t329f q331k

Phyre2

PDB 2j10 chain B

3D model

Region: 326 - 356
Aligned: 31
Modelled: 31
Confidence: 98.0%
Identity: 94%
PDB header:transcription
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: p53 tetramerization domain mutant t329f q331k

Phyre2

PDB 2j11 chain D

3D model

Region: 326 - 356
Aligned: 31
Modelled: 31
Confidence: 98.0%
Identity: 90%
PDB header:transcription
Chain: D: PDB Molecule:cellular tumor antigen p53;
PDBTitle: p53 tetramerization domain mutant y327s t329g q331g

Phyre2

PDB 1a1u chain A

3D model

Region: 326 - 354
Aligned: 29
Modelled: 29
Confidence: 97.9%
Identity: 90%
Fold: p53 tetramerization domain
Superfamily: p53 tetramerization domain
Family: p53 tetramerization domain

Phyre2

PDB 1dt7 chain Y

3D model

Region: 367 - 388
Aligned: 22
Modelled: 22
Confidence: 87.1%
Identity: 100%
PDB header:signaling protein
Chain: Y: PDB Molecule:cellular tumor antigen p53;
PDBTitle: solution structure of the c-terminal negative regulatory2 domain of p53 in a complex with ca2+-bound s100b(bb)

Phyre2

PDB 1dt7 chain X

3D model

Region: 367 - 388
Aligned: 22
Modelled: 22
Confidence: 87.1%
Identity: 100%
PDB header:signaling protein
Chain: X: PDB Molecule:cellular tumor antigen p53;
PDBTitle: solution structure of the c-terminal negative regulatory2 domain of p53 in a complex with ca2+-bound s100b(bb)

Phyre2
1
c2rmnA_
2
c2j1xA_
3
d2ac0a1
4
c2xipA_
5
d1hu8a_
6
c4a9zD_
7
c3zy1A_
8
d3saka_
9
c2wttL_
10
c2k8fB_
11
c2wqjM_
12
d1t4wa_
13
c2l14B_
14
d1hs5a_
15
d1aiea_
16
c2j10A_
17
c2j10D_
18
c2j10B_
19
c2j11D_
20
d1a1ua_
21
22
23
c1dt7Y_
24
c1dt7X_
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
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48
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50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
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80
81
82
83
84
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87
88
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90
91
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94
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96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2rmnA_
100.0 50 PDB header:cell cycle, antitumor protein
Chain: A: PDB Molecule:tumor protein 63;
PDBTitle: the solution structure of the p63 dna-binding domain
2c2j1xA_
100.0 97 PDB header:nuclear protein
Chain: A: PDB Molecule:cellular tumor antigen p53;
PDBTitle: human p53 core domain mutant m133l-v203a-y220c-n239y-n268d
3d2ac0a1
100.0 100 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:p53 DNA-binding domain-like
4c2xipA_
100.0 56 PDB header:cell cycle
Chain: A: PDB Molecule:tumour protein p73;
PDBTitle: crystal structure of the dna binding domain of human tp732 refined at 1.8 a resolution
5d1hu8a_
100.0 89 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:p53 DNA-binding domain-like
6c4a9zD_
99.2 35 PDB header:transcription
Chain: D: PDB Molecule:tumor protein 63;
PDBTitle: crystal structure of human p63 tetramerization domain
7c3zy1A_
99.1 33 PDB header:transcription
Chain: A: PDB Molecule:tumor protein 63;
PDBTitle: crystal structure of the human p63 tetramerization domain
8d3saka_
99.0 100 Fold:p53 tetramerization domain
Superfamily:p53 tetramerization domain
Family:p53 tetramerization domain
9c2wttL_
99.0 38 PDB header:transcription
Chain: L: PDB Molecule:tumor protein p73;
PDBTitle: structure of the human p73 tetramerization domain (crystal2 form ii)
10c2k8fB_
98.8 100 PDB header:transferase/transcription
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: structural basis for the regulation of p53 function by p300
11c2wqjM_
98.4 48 PDB header:transcription
Chain: M: PDB Molecule:tumor protein p73;
PDBTitle: crystal structure of a truncated variant of the human p732 tetramerization domain
12d1t4wa_
98.3 17 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:p53 DNA-binding domain-like
13c2l14B_
98.3 100 PDB header:protein binding
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: structure of cbp nuclear coactivator binding domain in complex with2 p53 tad
14d1hs5a_
98.2 94 Fold:p53 tetramerization domain
Superfamily:p53 tetramerization domain
Family:p53 tetramerization domain
15d1aiea_
98.1 100 Fold:p53 tetramerization domain
Superfamily:p53 tetramerization domain
Family:p53 tetramerization domain
16c2j10A_
98.0 94 PDB header:transcription
Chain: A: PDB Molecule:cellular tumor antigen p53;
PDBTitle: p53 tetramerization domain mutant t329f q331k
17c2j10D_
98.0 94 PDB header:transcription
Chain: D: PDB Molecule:cellular tumor antigen p53;
PDBTitle: p53 tetramerization domain mutant t329f q331k
18c2j10B_
98.0 94 PDB header:transcription
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: p53 tetramerization domain mutant t329f q331k
19c2j11D_
98.0 90 PDB header:transcription
Chain: D: PDB Molecule:cellular tumor antigen p53;
PDBTitle: p53 tetramerization domain mutant y327s t329g q331g
20d1a1ua_
97.9 90 Fold:p53 tetramerization domain
Superfamily:p53 tetramerization domain
Family:p53 tetramerization domain
21c3zy0C_
not modelled 96.9 43 PDB header:transcription
Chain: C: PDB Molecule:tumor protein p63;
PDBTitle: crystal structure of a truncated variant of the human p632 tetramerization domain lacking the c-terminal helix
22c1q2iA_
not modelled 93.9 100 PDB header:antitumor protein
Chain: A: PDB Molecule:pnc27;
PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells
23c1dt7Y_
87.1 100 PDB header:signaling protein
Chain: Y: PDB Molecule:cellular tumor antigen p53;
PDBTitle: solution structure of the c-terminal negative regulatory2 domain of p53 in a complex with ca2+-bound s100b(bb)
24c1dt7X_
87.1 100 PDB header:signaling protein
Chain: X: PDB Molecule:cellular tumor antigen p53;
PDBTitle: solution structure of the c-terminal negative regulatory2 domain of p53 in a complex with ca2+-bound s100b(bb)
25c3dacB_
not modelled 65.2 100 PDB header:cell cycle
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: structure of the human mdmx protein bound to the p53 tumor2 suppressor transactivation domain
26c3dacP_
not modelled 59.1 100 PDB header:cell cycle
Chain: P: PDB Molecule:cellular tumor antigen p53;
PDBTitle: structure of the human mdmx protein bound to the p53 tumor2 suppressor transactivation domain
27c2b3gB_
not modelled 32.2 100 PDB header:replication
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: p53n (fragment 33-60) bound to rpa70n
28d1iknc_
not modelled 29.1 18 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
29c3gycB_
not modelled 27.2 43 PDB header:hydrolase
Chain: B: PDB Molecule:putative glycoside hydrolase;
PDBTitle: crystal structure of putative glycoside hydrolase (yp_001304622.1)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution
30c3cguB_
not modelled 22.5 44 PDB header:hormone/signaling protein
Chain: B: PDB Molecule:protein giant-lens;
PDBTitle: crystal structure of unliganded argos
31c1w21D_
not modelled 21.2 21 PDB header:hydrolase
Chain: D: PDB Molecule:neuraminidase;
PDBTitle: structure of neuraminidase from english duck subtype n62 complexed with 30 mm sialic acid (nana, neu5ac), crystal3 soaked for 43 hours at 291 k.
32c2xdvA_
not modelled 21.1 40 PDB header:nuclear protein
Chain: A: PDB Molecule:myc-induced nuclear antigen;
PDBTitle: crystal structure of the catalytic domain of flj14393
33c1svcP_
not modelled 20.1 18 PDB header:transcription/dna
Chain: P: PDB Molecule:protein (nuclear factor kappa-b (nf-kb));
PDBTitle: nfkb p50 homodimer bound to dna
34d1a6ca2
not modelled 18.0 16 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
35c4diqA_
not modelled 17.5 47 PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase no66;
PDBTitle: crystal structure of human no66
36c1nfkA_
not modelled 14.6 18 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (nuclear factor kappa-b (nf-kb));
PDBTitle: structure of the nuclear factor kappa-b (nf-kb) p502 homodimer
37c2pi2A_
not modelled 14.0 11 PDB header:replication, dna binding protein
Chain: A: PDB Molecule:replication protein a 32 kda subunit;
PDBTitle: full-length replication protein a subunits rpa14 and rpa32
38d1e42a2
not modelled 13.7 32 Fold:Subdomain of clathrin and coatomer appendage domain
Superfamily:Subdomain of clathrin and coatomer appendage domain
Family:Clathrin adaptor appendage, alpha and beta chain-specific domain
39c3kf6A_
not modelled 13.7 13 PDB header:structural protein
Chain: A: PDB Molecule:protein stn1;
PDBTitle: crystal structure of s. pombe stn1-ten1 complex
40d1imhc1
not modelled 13.3 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
41d2pi2a1
not modelled 13.3 11 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
42d1e7ua3
not modelled 12.9 25 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
43d1vrba1
not modelled 12.9 20 Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Asparaginyl hydroxylase-like
44d1e8ya3
not modelled 12.2 36 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
45d1g4us2
not modelled 11.9 19 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Higher-molecular-weight phosphotyrosine protein phosphatases
46d1i96v_
not modelled 10.3 24 Fold:IF3-like
Superfamily:Translation initiation factor IF3, C-terminal domain
Family:Translation initiation factor IF3, C-terminal domain
47c1imhD_
not modelled 10.2 21 PDB header:transcription/dna
Chain: D: PDB Molecule:nuclear factor of activated t cells 5;
PDBTitle: tonebp/dna complex
48c1nmbN_
not modelled 9.8 26 PDB header:complex (hydrolase/immunoglobulin)
Chain: N: PDB Molecule:n9 neuraminidase;
PDBTitle: the structure of a complex between the nc10 antibody and influenza2 virus neuraminidase and comparison with the overlapping binding site3 of the nc41 antibody
49d1ef1c_
not modelled 9.5 25 Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Moesin tail domain
Family:Moesin tail domain
50d1f8ea_
not modelled 9.3 26 Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
51c2dfwA_
not modelled 9.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:salt-tolerant glutaminase;
PDBTitle: crystal structure of a major fragment of the salt-tolerant2 glutaminase from micrococcus luteus k-3
52d1regx_
not modelled 8.6 26 Fold:Ferredoxin-like
Superfamily:Translational regulator protein regA
Family:Translational regulator protein regA
53d2je8a3
not modelled 8.2 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
54c1zldA_
not modelled 8.2 62 PDB header:toxin
Chain: A: PDB Molecule:ptr necrosis toxin;
PDBTitle: crystal structure of a rgd-containing host-selective toxin:2 pyrenophora tritici-repentis ptr toxa
55c3ih9A_
not modelled 8.2 23 PDB header:hydrolase
Chain: A: PDB Molecule:salt-tolerant glutaminase;
PDBTitle: crystal structure analysis of mglu in its tris form
56c3czdA_
not modelled 8.0 29 PDB header:hydrolase
Chain: A: PDB Molecule:glutaminase kidney isoform;
PDBTitle: crystal structure of human glutaminase in complex with l-glutamate
57c1t0pB_
not modelled 8.0 23 PDB header:immune system
Chain: B: PDB Molecule:intercellular adhesion molecule-3;
PDBTitle: structural basis of icam recognition by integrin alpahlbeta2 revealed2 in the complex structure of binding domains of icam-3 and alphalbeta23 at 1.65 a
58d2o8ia1
not modelled 7.9 13 Fold:UraD-like
Superfamily:UraD-Like
Family:UraD-like
59c2pbyB_
not modelled 7.7 23 PDB header:hydrolase
Chain: B: PDB Molecule:glutaminase;
PDBTitle: probable glutaminase from geobacillus kaustophilus hta426
60c2q37A_
not modelled 7.6 30 PDB header:plant protein, lyase
Chain: A: PDB Molecule:ohcu decarboxylase;
PDBTitle: crystal structure of ohcu decarboxylase in the presence of2 (s)-allantoin
61d2q37a1
not modelled 7.6 30 Fold:UraD-like
Superfamily:UraD-Like
Family:UraD-like
62d1ko7a2
not modelled 7.5 19 Fold:PEP carboxykinase-like
Superfamily:PEP carboxykinase-like
Family:HPr kinase HprK C-terminal domain
63d1fx0b1
not modelled 7.5 33 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
64d2aepa1
not modelled 7.5 18 Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
65c3ss4C_
not modelled 7.4 29 PDB header:hydrolase
Chain: C: PDB Molecule:glutaminase c;
PDBTitle: crystal structure of mouse glutaminase c, phosphate-bound form
66c2jwyA_
not modelled 7.0 15 PDB header:lipoprotein
Chain: A: PDB Molecule:uncharacterized lipoprotein yaji;
PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540
67c3uo9B_
not modelled 6.9 29 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial;
PDBTitle: crystal structure of human gac in complex with glutamate and bptes
68d1ydua1
not modelled 6.9 18 Fold:At5g01610-like
Superfamily:At5g01610-like
Family:At5g01610-like
69c3lsoA_
not modelled 6.9 40 PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane anchored protein;
PDBTitle: crystal structure of putative membrane anchored protein from2 corynebacterium diphtheriae
70c2o011_
not modelled 6.8 33 PDB header:photosynthesis
Chain: 1: PDB Molecule:at3g54890;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution
71c3h6qA_
not modelled 6.8 33 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:macrocypin 1a;
PDBTitle: macrocypin, a beta-trefoil cysteine protease inhibitor
72d1yh5a1
not modelled 6.8 24 Fold:YggU-like
Superfamily:YggU-like
Family:YggU-like
73d1u60a_
not modelled 6.7 26 Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:Glutaminase
74d1mi2a_
not modelled 6.6 30 Fold:IL8-like
Superfamily:Interleukin 8-like chemokines
Family:Interleukin 8-like chemokines
75d2p8ta1
not modelled 6.6 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PH0730 N-terminal domain-like
76d1w5sa1
not modelled 6.6 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Helicase DNA-binding domain
77d1nsca_
not modelled 6.4 23 Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
78c3ns5B_
not modelled 6.3 12 PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b;
PDBTitle: crystal structure of the rna recognition motif of yeast eif3b residues2 76-161
79c2o012_
not modelled 6.3 33 PDB header:photosynthesis
Chain: 2: PDB Molecule:type ii chlorophyll a/b binding protein from
PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution
80c2nyuA_
not modelled 6.3 33 PDB header:transferase
Chain: A: PDB Molecule:putative ribosomal rna methyltransferase 2;
PDBTitle: crystal structure of human ftsj homolog 2 (e.coli) protein2 in complex with s-adenosylmethionine
81c1wveB_
not modelled 6.1 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:4-cresol dehydrogenase [hydroxylating]
PDBTitle: p-cresol methylhydroxylase: alteration of the structure of2 the flavoprotein subunit upon its binding to the3 cytochrome subunit
82d2g9hd1
not modelled 6.1 47 Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
83c1zggA_
not modelled 6.0 27 PDB header:hydrolase
Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine-
PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis
84d1lyva_
not modelled 6.0 29 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Higher-molecular-weight phosphotyrosine protein phosphatases
85d1zxqa2
not modelled 5.9 14 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
86d1rwta_
not modelled 5.9 33 Fold:Chlorophyll a-b binding protein
Superfamily:Chlorophyll a-b binding protein
Family:Chlorophyll a-b binding protein
87c3tiaC_
not modelled 5.9 18 PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:neuraminidase;
PDBTitle: crystal structure of 1957 pandemic h2n2 neuraminidase complexed with2 laninamivir
88d1ixta_
not modelled 5.9 80 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Conotoxin
89c1ixtA_
not modelled 5.9 80 PDB header:toxin
Chain: A: PDB Molecule:spasmodic protein tx9a-like protein;
PDBTitle: structure of a novel p-superfamily spasmodic conotoxin2 reveals an inhibitory cystine knot motif
90c3kbyB_
not modelled 5.8 28 PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of hypothetical protein from staphylococcus aureus
91d1ivga_
not modelled 5.8 18 Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
92c2wxoA_
not modelled 5.8 33 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: the crystal structure of the murine class ia pi 3-kinase2 p110delta in complex with as5.
93c3rh0A_
not modelled 5.7 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2
94c2hu4D_
not modelled 5.7 20 PDB header:hydrolase
Chain: D: PDB Molecule:neuraminidase;
PDBTitle: n1 neuraminidase in complex with oseltamivir 2
95d1p8aa_
not modelled 5.7 18 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
96c3pm9A_
not modelled 5.7 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution
97d1inva_
not modelled 5.7 22 Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
98d1skye1
not modelled 5.6 33 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
99c2rd0A_
not modelled 5.6 13 PDB header:transferase/oncoprotein
Chain: A: PDB Molecule:phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
PDBTitle: structure of a human p110alpha/p85alpha complex

Binding site prediction 

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