Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionO95081
DateWed May 9 18:00:30 BST 2012
Unique Job IDdd03a86d26de46f9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2d9lA_
Top template information
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip
Confidence and coverage
Confidence:100.0% Coverage: 27%
129 residues ( 27% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 76% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MVMAAKKGPGPGGGVSGGKAEAEAASEVWCRRVRELGGCSQAGNRHCFECAQRGVTYVDI
Secondary structure 
SS confidence 
Disorder  ?????????????????????
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  TVGSFVCTTCSGLLRGLNPPHRVKSISMTTFTEPEVVFLQSRGNEVCRKIWLGLFDARTS
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LVPDSRDPQKVKEFLQEKYEKKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLG
Secondary structure 
SS confidence 
Disorder 
?????
????????????????????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  DPAPSLSVAASTSSQPVSQSHARTSQARSTQPPPHSSVKKASTDLLADIGGDPFAAPQMA
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  PAFAAFPAFGGQTPSQGGFANFDAFSSGPSSSVFGSLPPAGQASFQAQPTPAGSSQGTPF
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  GATPLAPASQPNSLADVGSFLGPGVPAAGVPSSLFGMAGQVPPLQSVTMGGGGGSSTGLA
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  FGAFTNPFTAPAAQSPLPSTNPFQPNGLAPGPGFGMSSAGPGFPQAVPPTGAFASSFPAP
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  LFPPQTPLVQQQNGSSFGDLGSAKLGQRPLSQPAGISTNPFMTGPSSSPFASKPPTTNPF
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .
Sequence  L
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2d9l chain A

3D model

Region: 24 - 157
Aligned: 129
Modelled: 134
Confidence: 100.0%
Identity: 68%
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip

Phyre2

PDB 3lvr chain E

3D model

Region: 24 - 151
Aligned: 123
Modelled: 128
Confidence: 100.0%
Identity: 19%
PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium

Phyre2

PDB 2iqj chain B

3D model

Region: 24 - 153
Aligned: 122
Modelled: 130
Confidence: 100.0%
Identity: 22%
PDB header:protein transport
Chain: B: PDB Molecule:stromal membrane-associated protein 1-like;
PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like

Phyre2

PDB 1dcq chain A domain 2

3D model

Region: 25 - 148
Aligned: 119
Modelled: 124
Confidence: 100.0%
Identity: 20%
Fold: ArfGap/RecO-like zinc finger
Superfamily: ArfGap/RecO-like zinc finger
Family: Pyk2-associated protein beta ARF-GAP domain

Phyre2

PDB 3feh chain A

3D model

Region: 22 - 160
Aligned: 133
Modelled: 139
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase activator
Chain: A: PDB Molecule:centaurin-alpha-1;
PDBTitle: crystal structure of full length centaurin alpha-1

Phyre2

PDB 3jue chain A

3D model

Region: 28 - 150
Aligned: 118
Modelled: 118
Confidence: 100.0%
Identity: 22%
PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1

Phyre2

PDB 1dcq chain A

3D model

Region: 26 - 151
Aligned: 121
Modelled: 126
Confidence: 100.0%
Identity: 20%
PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.

Phyre2

PDB 2b0o chain F

3D model

Region: 26 - 150
Aligned: 120
Modelled: 125
Confidence: 100.0%
Identity: 18%
PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain

Phyre2

PDB 2owa chain B

3D model

Region: 22 - 143
Aligned: 113
Modelled: 122
Confidence: 100.0%
Identity: 21%
PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)

Phyre2

PDB 2p57 chain A

3D model

Region: 23 - 142
Aligned: 113
Modelled: 120
Confidence: 100.0%
Identity: 19%
PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein

Phyre2

PDB 3o47 chain A

3D model

Region: 25 - 152
Aligned: 123
Modelled: 128
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein

Phyre2

PDB 3dwd chain B

3D model

Region: 24 - 142
Aligned: 110
Modelled: 119
Confidence: 100.0%
Identity: 24%
PDB header:transport protein
Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1;
PDBTitle: crystal structure of the arfgap domain of human arfgap1

Phyre2

PDB 1u5k chain A domain 2

3D model

Region: 30 - 141
Aligned: 87
Modelled: 97
Confidence: 96.4%
Identity: 16%
Fold: ArfGap/RecO-like zinc finger
Superfamily: ArfGap/RecO-like zinc finger
Family: RecO C-terminal domain-like

Phyre2

PDB 1u5k chain A

3D model

Region: 29 - 141
Aligned: 88
Modelled: 98
Confidence: 95.7%
Identity: 16%
PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco

Phyre2

PDB 3bji chain A

3D model

Region: 20 - 78
Aligned: 57
Modelled: 59
Confidence: 93.9%
Identity: 14%
PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1

Phyre2

PDB 1kxu chain A

3D model

Region: 90 - 144
Aligned: 53
Modelled: 55
Confidence: 82.7%
Identity: 19%
PDB header:regulatory protein
Chain: A: PDB Molecule:cyclin h;
PDBTitle: cyclin h, a positive regulatory subunit of cdk activating kinase

Phyre2

PDB 3ihp chain B

3D model

Region: 37 - 91
Aligned: 55
Modelled: 55
Confidence: 81.1%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: covalent ubiquitin-usp5 complex

Phyre2

PDB 2ba0 chain D domain 2

3D model

Region: 76 - 141
Aligned: 49
Modelled: 49
Confidence: 80.4%
Identity: 14%
Fold: Ribonuclease PH domain 2-like
Superfamily: Ribonuclease PH domain 2-like
Family: Ribonuclease PH domain 2-like

Phyre2

PDB 1cjy chain A domain 2

3D model

Region: 90 - 143
Aligned: 35
Modelled: 35
Confidence: 78.4%
Identity: 29%
Fold: FabD/lysophospholipase-like
Superfamily: FabD/lysophospholipase-like
Family: Lysophospholipase

Phyre2

PDB 2br2 chain B domain 2

3D model

Region: 82 - 143
Aligned: 45
Modelled: 45
Confidence: 77.8%
Identity: 18%
Fold: Ribonuclease PH domain 2-like
Superfamily: Ribonuclease PH domain 2-like
Family: Ribonuclease PH domain 2-like

Phyre2
1
c2d9lA_
2
c3lvrE_
3
c2iqjB_
4
d1dcqa2
5
c3fehA_
6
c3jueA_
7
c1dcqA_
8
c2b0oF_
9
c2owaB_
10
c2p57A_
11
c3o47A_
12
c3dwdB_
13
d1u5ka2
14
c1u5kA_
15
c3bjiA_
16
c1kxuA_
17
c3ihpB_
18
d2ba0d2
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d1cjya2
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d2br2b2
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2d9lA_
100.0 68 PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip
2c3lvrE_
100.0 19 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
3c2iqjB_
100.0 22 PDB header:protein transport
Chain: B: PDB Molecule:stromal membrane-associated protein 1-like;
PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like
4d1dcqa2
100.0 20 Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:Pyk2-associated protein beta ARF-GAP domain
5c3fehA_
100.0 22 PDB header:hydrolase activator
Chain: A: PDB Molecule:centaurin-alpha-1;
PDBTitle: crystal structure of full length centaurin alpha-1
6c3jueA_
100.0 22 PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1
7c1dcqA_
100.0 20 PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.
8c2b0oF_
100.0 18 PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain
9c2owaB_
100.0 21 PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)
10c2p57A_
100.0 19 PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein
11c3o47A_
100.0 24 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
12c3dwdB_
100.0 24 PDB header:transport protein
Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1;
PDBTitle: crystal structure of the arfgap domain of human arfgap1
13d1u5ka2
96.4 16 Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:RecO C-terminal domain-like
14c1u5kA_
95.7 16 PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco
15c3bjiA_
93.9 14 PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1
16c1kxuA_
82.7 19 PDB header:regulatory protein
Chain: A: PDB Molecule:cyclin h;
PDBTitle: cyclin h, a positive regulatory subunit of cdk activating kinase
17c3ihpB_
81.1 18 PDB header:hydrolase
Chain: B: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: covalent ubiquitin-usp5 complex
18d2ba0d2
80.4 14 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
19d1cjya2
78.4 29 Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:Lysophospholipase
20d2br2b2
77.8 18 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
21d2g45a1
not modelled 77.5 20 Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
22c2dvkA_
not modelled 76.6 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0130 protein ape0816;
PDBTitle: crystal structure of hypothetical protein from aeropyrum pernix
23d1y0ja1
not modelled 76.1 17 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
24c2qg3B_
not modelled 75.5 13 PDB header:unknown function
Chain: B: PDB Molecule:upf0130 protein af_2059;
PDBTitle: crystal structure of a tyw3 methyltransferase-like protein (af_2059)2 from archaeoglobus fulgidus dsm 4304 at 1.95 a resolution
25d2je6b2
not modelled 74.9 20 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
26d2djaa1
not modelled 74.7 20 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
27c3c5kA_
not modelled 74.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:histone deacetylase 6;
PDBTitle: crystal structure of human hdac6 zinc finger domain
28c2junA_
not modelled 70.9 27 PDB header:ligase
Chain: A: PDB Molecule:midline-1;
PDBTitle: structure of the mid1 tandem b-boxes reveals an interaction2 reminiscent of intermolecular ring heterodimers
29d2dq5a1
not modelled 70.8 27 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
30c2egmA_
not modelled 70.7 19 PDB header:transcription/metal binding protein
Chain: A: PDB Molecule:tripartite motif-containing protein 41;
PDBTitle: solution structure of the zf-b_box domain from human2 tripartite motif protein 41
31c2d8uA_
not modelled 70.1 19 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin ligase trim63;
PDBTitle: solution structure of the b-box domain of the human2 tripartite motif-containing 63 protein
32d1jkwa1
not modelled 67.0 19 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
33d5gata_
not modelled 64.3 22 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
34c2yrgA_
not modelled 64.1 25 PDB header:ligase
Chain: A: PDB Molecule:tripartite motif-containing protein 5;
PDBTitle: solution structure of the b-box domain from tripartite2 motif-containing protein 5
35d1gnfa_
not modelled 59.1 17 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
36c2it3B_
not modelled 58.2 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:upf0130 protein ph1069;
PDBTitle: structure of ph1069 protein from pyrococcus horikoshii
37c2vrwB_
not modelled 57.1 15 PDB header:signaling protein
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor
38c2gb5B_
not modelled 56.1 21 PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
39d2nn6b2
not modelled 55.8 6 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
40d2a1ja1
not modelled 54.9 20 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
41c3mhsA_
not modelled 54.4 15 PDB header:hydrolase/transcription regulator/protei
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 8;
PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde
42c1y1yS_
not modelled 54.4 20 PDB header:transferase/transcription/dna-rna hybrid
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis-dna/rna complex
43c2i6yA_
not modelled 53.2 5 PDB header:lyase
Chain: A: PDB Molecule:anthranilate synthase component i, putative;
PDBTitle: structure and mechanism of mycobacterium tuberculosis salicylate2 synthase, mbti
44c2kgoA_
not modelled 52.8 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ybii;
PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402
45d2crga1
not modelled 52.6 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
46c2zetD_
not modelled 52.2 19 PDB header:signaling protein
Chain: D: PDB Molecule:melanophilin;
PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin
47d2dida1
not modelled 51.8 19 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
48d2uzga1
not modelled 51.4 15 Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
49d2d8ua1
not modelled 51.2 18 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
50c2riqA_
not modelled 50.9 19 PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: crystal structure of the third zinc-binding domain of human parp-1
51d3gata_
not modelled 50.8 15 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
52c1nltA_
not modelled 50.4 26 PDB header:protein transport
Chain: A: PDB Molecule:mitochondrial protein import protein mas5;
PDBTitle: the crystal structure of hsp40 ydj1
53d2idaa1
not modelled 49.9 17 Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
54c3ky9B_
not modelled 49.8 13 PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
55d2a2pa1
not modelled 49.8 24 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Selenoprotein W-related
56d1hkya_
not modelled 49.7 54 Fold:Hairpin loop containing domain-like
Superfamily:Hairpin loop containing domain-like
Family:Pan module (APPLE domain)
57d2vuti1
not modelled 49.7 23 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
58c1d4uA_
not modelled 49.2 25 PDB header:dna binding protein
Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd);
PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies
59d1pjua1
not modelled 49.1 31 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
60c2kdxA_
not modelled 47.5 20 PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
61d2dipa1
not modelled 47.3 18 Fold:RING/U-box
Superfamily:RING/U-box
Family:ZZ domain
62c1x68A_
not modelled 47.1 20 PDB header:protein binding
Chain: A: PDB Molecule:fhl5 protein;
PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein
63d2g5fa1
not modelled 46.6 5 Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
64c1x79C_
not modelled 46.4 28 PDB header:protein transport
Chain: C: PDB Molecule:rab gtpase binding effector protein 1;
PDBTitle: crystal structure of human gga1 gat domain complexed with2 the gat-binding domain of rabaptin5
65d1cvra2
not modelled 46.2 14 Fold:Caspase-like
Superfamily:Caspase-like
Family:Gingipain R (RgpB), N-terminal domain
66c2eqrA_
not modelled 46.1 17 PDB header:transcription
Chain: A: PDB Molecule:nuclear receptor corepressor 1;
PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1
67d2bkra1
not modelled 46.1 8 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
68d1y0pa1
not modelled 45.8 15 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Di-heme elbow motif
69c1pqvS_
not modelled 43.2 30 PDB header:transferase/transcription
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis complex
70c2jvnA_
not modelled 42.2 19 PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: domain c of human parp-1
71d1zbdb_
not modelled 41.9 17 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
72d1k0ga_
not modelled 40.6 25 Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
73d1v6za2
not modelled 40.5 20 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
74c2j83B_
not modelled 40.1 20 PDB header:hydrolase
Chain: B: PDB Molecule:ulilysin;
PDBTitle: ulilysin metalloprotease in complex with batimastat.
75c2yusA_
not modelled 39.8 16 PDB header:transcription
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-
PDBTitle: solution structure of the sant domain of human swi/snf-2 related matrix-associated actin-dependent regulator of3 chromatin subfamily c member 1
76d1ffya1
not modelled 39.0 12 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
77d1qdla_
not modelled 38.8 5 Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
78d2nn6d2
not modelled 38.8 20 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
79d1cota_
not modelled 38.5 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
80d2nllb_
not modelled 38.1 24 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
81c3r07A_
not modelled 37.3 17 PDB header:transferase
Chain: A: PDB Molecule:lipoate-protein ligase a subunit 1;
PDBTitle: structural analysis of an archaeal lipoylation system. a bi-partite2 lipoate protein ligase and its e2 lipoyl domain from thermoplasma3 acidophilum
82d1fyba1
not modelled 36.8 39 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
83c2hyxA_
not modelled 36.7 16 PDB header:unknown function
Chain: A: PDB Molecule:protein dipz;
PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis
84d1tlja_
not modelled 36.3 14 Fold:SSo0622-like
Superfamily:SSo0622-like
Family:SSo0622-like
85c1tljA_
not modelled 36.3 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0130 protein sso0622;
PDBTitle: crystal structure of conserved protein of unknown function2 sso0622 from sulfolobus solfataricus
86c2cszA_
not modelled 36.0 29 PDB header:signaling protein
Chain: A: PDB Molecule:synaptotagmin-like protein 4;
PDBTitle: solution structure of the ring domain of the synaptotagmin-2 like protein 4
87d2fn0a1
not modelled 35.2 5 Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
88d1wkqa_
not modelled 34.9 13 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
89c2eblA_
not modelled 34.8 23 PDB header:transcription
Chain: A: PDB Molecule:coup transcription factor 1;
PDBTitle: solution structure of the zinc finger, c4-type domain of2 human coup transcription factor 1
90d1pfta_
not modelled 34.1 32 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
91c1x64A_
not modelled 33.7 19 PDB header:contractile protein
Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein;
PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein
92d2cora1
not modelled 33.6 17 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
93d2csva1
not modelled 33.3 18 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
94d1lc5a_
not modelled 33.1 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
95c3h9mA_
not modelled 32.9 12 PDB header:lyase
Chain: A: PDB Molecule:p-aminobenzoate synthetase, component i;
PDBTitle: crystal structure of para-aminobenzoate synthetase,2 component i from cytophaga hutchinsonii
96c2difA_
not modelled 32.1 17 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 39;
PDBTitle: one sequence two fold ? : miss fold of the zf-b-box domain2 from human tripartite motif protein 39
97d1qypa_
not modelled 32.1 20 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
98c1xt5A_
not modelled 32.0 16 PDB header:immune system
Chain: A: PDB Molecule:variable region-containing chitin-binding
PDBTitle: crystal structure of vcbp3, domain 1, from branchiostoma2 floridae
99d1dl6a_
not modelled 31.6 21 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
100c3tsuA_
not modelled 31.5 26 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
101d1unld_
not modelled 30.9 38 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
102c1l4aE_
not modelled 30.8 20 PDB header:endocytosis/exocytosis
Chain: E: PDB Molecule:synaphin a;
PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei
103c1unhD_
not modelled 30.3 38 PDB header:cell cycle
Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1;
PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin.
104d1tiha_
not modelled 30.1 39 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
105d1ynwa1
not modelled 29.8 25 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
106c3pkiF_
not modelled 29.7 40 PDB header:hydrolase
Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6;
PDBTitle: human sirt6 crystal structure in complex with adp ribose
107c3jyvN_
not modelled 29.6 22 PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29(a);
PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution
108d2fc7a1
not modelled 29.6 26 Fold:RING/U-box
Superfamily:RING/U-box
Family:ZZ domain
109c2darA_
not modelled 29.6 25 PDB header:metal binding protein
Chain: A: PDB Molecule:pdz and lim domain protein 5;
PDBTitle: solution structure of first lim domain of enigma-like pdz2 and lim domains protein
110c1cvrA_
not modelled 29.5 13 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:gingipain r;
PDBTitle: crystal structure of the arg specific cysteine proteinase gingipain r2 (rgpb)
111d1hcqa_
not modelled 29.3 24 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
112c1oahA_
not modelled 29.2 19 PDB header:reductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa).
113d1oaha_
not modelled 29.2 19 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Di-heme elbow motif
114c2gamA_
not modelled 28.6 16 PDB header:transferase
Chain: A: PDB Molecule:beta-1,6-n-acetylglucosaminyltransferase;
PDBTitle: x-ray crystal structure of murine leukocyte-type core 2 b1,2 6-n-acetylglucosaminyltransferase (c2gnt-l) in complex3 with galb1,3galnac
115d1ce3a_
not modelled 28.3 35 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
116d1i7qa_
not modelled 27.8 19 Fold:ADC synthase
Superfamily:ADC synthase
Family:ADC synthase
117c1qh2B_
not modelled 27.5 36 PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:protein (trypsin inhibitor c2);
PDBTitle: chymotrypsin inhibitor (c2) from nicotiana alata
118c2d8xA_
not modelled 27.4 25 PDB header:structural protein, cell cycle
Chain: A: PDB Molecule:protein pinch;
PDBTitle: solution structure of the second lim domain of particularly2 interesting new cys-his protein (pinch)
119d2o9ca1
not modelled 27.4 13 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
120c3bvoA_
not modelled 27.3 50 PDB header:chaperone
Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor;
PDBTitle: crystal structure of human co-chaperone protein hscb

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