Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA1L020
DateTue Apr 3 15:04:20 BST 2012
Unique Job ID1d9613f1f7c6b66e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3n89B_
Top template information
PDB header:cell cycle
Chain: B: PDB Molecule:defective in germ line development protein 3, isoform a;
PDBTitle: kh domains
Confidence and coverage
Confidence:100.0% Coverage: 31%
163 residues ( 31% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
248 residues ( 48%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 57% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MPSLVVSGIMERNGGFGELGCFGGSAKDRGLLEDERALQLALDQLCLLGLGEPPAPTAGE
Secondary structure 
SS confidence 
Disorder  ????????
?
??
???????????????????
???????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DGGGGGGGAPAQPAAPPQPAPPPPPAAPPAAPTAAPAAQTPQPPTAPKGASDAKLCALYK
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  EAELRLKGSSNTTECVPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVT
Secondary structure 
SS confidence 
Disorder  ??????????
??
???
???
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  GRREDVATARREIISAAEHFSMIRASRNKSGAAFGVAPALPGQVTIRVRVPYRVVGLVVG
Secondary structure 
SS confidence 
Disorder 
?????????????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  PKGATIKRIQQQTNTYIITPSRDRDPVFEITGAPGNVERAREEIETHIAVRTGKILEYNN
Secondary structure 
SS confidence 
Disorder 
?????????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  ENDFLAGSPDAAIDSRYSDAWRVHQPGCKPLSTFRQNSLGCIGECGVDSGFEAPRLGEQG
Secondary structure 
SS confidence 
Disorder  ???????????????????????????????????????????????????????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  GDFGYGGYLFPGYGVGKQDVYYGVAETSPPLWAGQENATPTSVLFSSASSSSSSSAKARA
Secondary structure 
SS confidence 
Disorder  ????
???????
???????????????????????????????????????????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  GPPGAHRSPATSAGPELAGLPRRPPGEPLQGFSKLGGGGLRSPGGGRDCMVCFESEVTAA
Secondary structure 
SS confidence 
Disorder  ?????
?
?
??
??
?
Disorder confidence 
 
   .........490.........500.........510.........520
Sequence  LVPCGHNLFCMECAVRICERTDPECPVCHITATQAIRIFS
Secondary structure 
SS confidence 
Disorder 
??
??
?
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3n89 chain B

3D model

Region: 123 - 288
Aligned: 163
Modelled: 166
Confidence: 100.0%
Identity: 18%
PDB header:cell cycle
Chain: B: PDB Molecule:defective in germ line development protein 3, isoform a;
PDBTitle: kh domains

Phyre2

PDB 1tua chain A

3D model

Region: 135 - 292
Aligned: 153
Modelled: 158
Confidence: 99.9%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ape0754;
PDBTitle: 1.5 a crystal structure of a protein of unknown function2 ape0754 from aeropyrum pernix

Phyre2

PDB 2jvz chain A

3D model

Region: 131 - 288
Aligned: 150
Modelled: 158
Confidence: 99.9%
Identity: 23%
PDB header:splicing
Chain: A: PDB Molecule:far upstream element-binding protein 2;
PDBTitle: solution nmr structure of the second and third kh domains2 of ksrp

Phyre2

PDB 2qnd chain A

3D model

Region: 132 - 289
Aligned: 129
Modelled: 131
Confidence: 99.9%
Identity: 21%
PDB header:rna binding protein
Chain: A: PDB Molecule:fmr1 protein;
PDBTitle: crystal structure of the kh1-kh2 domains from human fragile x mental2 retardation protein

Phyre2

PDB 2e3u chain A

3D model

Region: 133 - 292
Aligned: 150
Modelled: 160
Confidence: 99.9%
Identity: 24%
PDB header:rna binding protein
Chain: A: PDB Molecule:hypothetical protein ph1566;
PDBTitle: crystal structure analysis of dim2p from pyrococcus horikoshii ot3

Phyre2

PDB 2jzx chain A

3D model

Region: 128 - 290
Aligned: 154
Modelled: 163
Confidence: 99.9%
Identity: 19%
PDB header:rna binding protein
Chain: A: PDB Molecule:poly(rc)-binding protein 2;
PDBTitle: pcbp2 kh1-kh2 domains

Phyre2

PDB 3krm chain B

3D model

Region: 131 - 289
Aligned: 143
Modelled: 144
Confidence: 99.9%
Identity: 24%
PDB header:rna binding protein
Chain: B: PDB Molecule:insulin-like growth factor 2 mrna-binding protein
PDBTitle: imp1 kh34

Phyre2

PDB 1j4w chain A

3D model

Region: 131 - 288
Aligned: 135
Modelled: 136
Confidence: 99.9%
Identity: 28%
PDB header:transcription/dna
Chain: A: PDB Molecule:fuse binding protein;
PDBTitle: complex of the kh3 and kh4 domains of fbp with a2 single_stranded 29mer dna oligonucleotide from the fuse3 element of the c-myc oncogene

Phyre2

PDB 2anr chain A

3D model

Region: 130 - 289
Aligned: 143
Modelled: 144
Confidence: 99.9%
Identity: 25%
PDB header:rna-binding protein/rna
Chain: A: PDB Molecule:neuro-oncological ventral antigen 1;
PDBTitle: crystal structure (ii) of nova-1 kh1/kh2 domain tandem with 25nt rna2 hairpin

Phyre2

PDB 2dgr chain A

3D model

Region: 215 - 297
Aligned: 83
Modelled: 83
Confidence: 99.7%
Identity: 67%
PDB header:rna binding protein
Chain: A: PDB Molecule:ring finger and kh domain-containing protein 1;
PDBTitle: solution structure of the second kh domain in ring finger2 and kh domain containing protein 1

Phyre2

PDB 2ctm chain A domain 1

3D model

Region: 123 - 200
Aligned: 77
Modelled: 78
Confidence: 99.5%
Identity: 25%
Fold: Eukaryotic type KH-domain (KH-domain type I)
Superfamily: Eukaryotic type KH-domain (KH-domain type I)
Family: Eukaryotic type KH-domain (KH-domain type I)

Phyre2

PDB 2cy1 chain A

3D model

Region: 127 - 259
Aligned: 108
Modelled: 109
Confidence: 99.5%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:nusa protein homolog;
PDBTitle: crystal structure of ape1850

Phyre2

PDB 2ctk chain A domain 1

3D model

Region: 223 - 289
Aligned: 67
Modelled: 67
Confidence: 99.5%
Identity: 28%
Fold: Eukaryotic type KH-domain (KH-domain type I)
Superfamily: Eukaryotic type KH-domain (KH-domain type I)
Family: Eukaryotic type KH-domain (KH-domain type I)

Phyre2

PDB 2cte chain A domain 1

3D model

Region: 123 - 202
Aligned: 79
Modelled: 80
Confidence: 99.5%
Identity: 23%
Fold: Eukaryotic type KH-domain (KH-domain type I)
Superfamily: Eukaryotic type KH-domain (KH-domain type I)
Family: Eukaryotic type KH-domain (KH-domain type I)

Phyre2

PDB 1vig chain A

3D model

Region: 220 - 289
Aligned: 70
Modelled: 70
Confidence: 99.5%
Identity: 21%
Fold: Eukaryotic type KH-domain (KH-domain type I)
Superfamily: Eukaryotic type KH-domain (KH-domain type I)
Family: Eukaryotic type KH-domain (KH-domain type I)

Phyre2

PDB 1khm chain A

3D model

Region: 211 - 296
Aligned: 86
Modelled: 86
Confidence: 99.4%
Identity: 20%
Fold: Eukaryotic type KH-domain (KH-domain type I)
Superfamily: Eukaryotic type KH-domain (KH-domain type I)
Family: Eukaryotic type KH-domain (KH-domain type I)

Phyre2

PDB 1we8 chain A

3D model

Region: 210 - 289
Aligned: 80
Modelled: 80
Confidence: 99.4%
Identity: 21%
Fold: Eukaryotic type KH-domain (KH-domain type I)
Superfamily: Eukaryotic type KH-domain (KH-domain type I)
Family: Eukaryotic type KH-domain (KH-domain type I)

Phyre2

PDB 1wvn chain A domain 1

3D model

Region: 223 - 289
Aligned: 67
Modelled: 67
Confidence: 99.4%
Identity: 25%
Fold: Eukaryotic type KH-domain (KH-domain type I)
Superfamily: Eukaryotic type KH-domain (KH-domain type I)
Family: Eukaryotic type KH-domain (KH-domain type I)

Phyre2

PDB 1x4n chain A domain 1

3D model

Region: 218 - 289
Aligned: 72
Modelled: 72
Confidence: 99.4%
Identity: 26%
Fold: Eukaryotic type KH-domain (KH-domain type I)
Superfamily: Eukaryotic type KH-domain (KH-domain type I)
Family: Eukaryotic type KH-domain (KH-domain type I)

Phyre2

PDB 2axy chain A domain 1

3D model

Region: 223 - 288
Aligned: 66
Modelled: 66
Confidence: 99.4%
Identity: 20%
Fold: Eukaryotic type KH-domain (KH-domain type I)
Superfamily: Eukaryotic type KH-domain (KH-domain type I)
Family: Eukaryotic type KH-domain (KH-domain type I)

Phyre2

PDB 3t6p chain A

3D model

Region: 465 - 519
Aligned: 50
Modelled: 50
Confidence: 99.4%
Identity: 38%
PDB header:apoptosis
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 2;
PDBTitle: iap antagonist-induced conformational change in ciap1 promotes e32 ligase activation via dimerization

Phyre2

PDB 2ecg chain A

3D model

Region: 468 - 519
Aligned: 47
Modelled: 47
Confidence: 99.0%
Identity: 34%
PDB header:apoptosis
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4;
PDBTitle: solution structure of the ring domain of the baculoviral2 iap repeat-containing protein 4 from homo sapiens

Phyre2

PDB 2ea5 chain A

3D model

Region: 453 - 520
Aligned: 63
Modelled: 63
Confidence: 98.9%
Identity: 27%
PDB header:cell cycle
Chain: A: PDB Molecule:cell growth regulator with ring finger domain
PDBTitle: solution structure of the ring domain of the human cell2 growth regulator with ring finger domain 1 protein

Phyre2

PDB 2eci chain A

3D model

Region: 443 - 513
Aligned: 70
Modelled: 70
Confidence: 98.5%
Identity: 19%
PDB header:metal binding protein
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein

Phyre2
1
c3n89B_
2
c1tuaA_
3
c2jvzA_
4
c2qndA_
5
c2e3uA_
6
c2jzxA_
7
c3krmB_
8
c1j4wA_
9
c2anrA_
10
c2dgrA_
11
d2ctma1
12
c2cy1A_
13
d2ctka1
14
d2ctea1
15
d1viga_
16
d1khma_
17
d1we8a_
18
d1wvna1
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d1x4na1
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d2axya1
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c3t6pA_
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c2ecgA_
38
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c2ea5A_
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c2eciA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3n89B_
100.0 18 PDB header:cell cycle
Chain: B: PDB Molecule:defective in germ line development protein 3, isoform a;
PDBTitle: kh domains
2c1tuaA_
99.9 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ape0754;
PDBTitle: 1.5 a crystal structure of a protein of unknown function2 ape0754 from aeropyrum pernix
3c2jvzA_
99.9 23 PDB header:splicing
Chain: A: PDB Molecule:far upstream element-binding protein 2;
PDBTitle: solution nmr structure of the second and third kh domains2 of ksrp
4c2qndA_
99.9 21 PDB header:rna binding protein
Chain: A: PDB Molecule:fmr1 protein;
PDBTitle: crystal structure of the kh1-kh2 domains from human fragile x mental2 retardation protein
5c2e3uA_
99.9 24 PDB header:rna binding protein
Chain: A: PDB Molecule:hypothetical protein ph1566;
PDBTitle: crystal structure analysis of dim2p from pyrococcus horikoshii ot3
6c2jzxA_
99.9 19 PDB header:rna binding protein
Chain: A: PDB Molecule:poly(rc)-binding protein 2;
PDBTitle: pcbp2 kh1-kh2 domains
7c3krmB_
99.9 24 PDB header:rna binding protein
Chain: B: PDB Molecule:insulin-like growth factor 2 mrna-binding protein
PDBTitle: imp1 kh34
8c1j4wA_
99.9 28 PDB header:transcription/dna
Chain: A: PDB Molecule:fuse binding protein;
PDBTitle: complex of the kh3 and kh4 domains of fbp with a2 single_stranded 29mer dna oligonucleotide from the fuse3 element of the c-myc oncogene
9c2anrA_
99.9 25 PDB header:rna-binding protein/rna
Chain: A: PDB Molecule:neuro-oncological ventral antigen 1;
PDBTitle: crystal structure (ii) of nova-1 kh1/kh2 domain tandem with 25nt rna2 hairpin
10c2dgrA_
99.7 67 PDB header:rna binding protein
Chain: A: PDB Molecule:ring finger and kh domain-containing protein 1;
PDBTitle: solution structure of the second kh domain in ring finger2 and kh domain containing protein 1
11d2ctma1
99.5 25 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
12c2cy1A_
99.5 17 PDB header:transcription
Chain: A: PDB Molecule:nusa protein homolog;
PDBTitle: crystal structure of ape1850
13d2ctka1
99.5 28 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
14d2ctea1
99.5 23 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
15d1viga_
99.5 21 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
16d1khma_
99.4 20 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
17d1we8a_
99.4 21 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
18d1wvna1
99.4 25 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
19d1x4na1
99.4 26 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
20d2axya1
99.4 20 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
21d1x4ma1
not modelled 99.4 30 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
22c3t6pA_
99.4 38 PDB header:apoptosis
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 2;
PDBTitle: iap antagonist-induced conformational change in ciap1 promotes e32 ligase activation via dimerization
23d2ctfa1
not modelled 99.4 23 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
24d2ctja1
not modelled 99.4 19 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
25c1ztgD_
not modelled 99.4 23 PDB header:dna, rna binding protein/dna
Chain: D: PDB Molecule:poly(rc)-binding protein 1;
PDBTitle: human alpha polyc binding protein kh1
26d2ctla1
not modelled 99.4 21 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
27d1j4wa1
not modelled 99.4 32 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
28d1ec6a_
not modelled 99.4 24 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
29d1zzka1
not modelled 99.4 24 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
30d1dtja_
not modelled 99.4 26 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
31c2hh2A_
not modelled 99.3 29 PDB header:rna binding protein
Chain: A: PDB Molecule:kh-type splicing regulatory protein;
PDBTitle: solution structure of the fourth kh domain of ksrp
32d1j4wa2
not modelled 99.3 34 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
33c2hh3A_
not modelled 99.3 32 PDB header:rna binding protein
Chain: A: PDB Molecule:kh-type splicing regulatory protein;
PDBTitle: solution structure of the third kh domain of ksrp
34d1dt4a_
not modelled 99.3 27 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
35d2ba0a3
not modelled 99.2 24 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
36d1tuaa1
not modelled 99.1 25 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
37c2ecgA_
99.0 34 PDB header:apoptosis
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4;
PDBTitle: solution structure of the ring domain of the baculoviral2 iap repeat-containing protein 4 from homo sapiens
38d1tuaa2
not modelled 98.9 26 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
39c2ea5A_
98.9 27 PDB header:cell cycle
Chain: A: PDB Molecule:cell growth regulator with ring finger domain
PDBTitle: solution structure of the ring domain of the human cell2 growth regulator with ring finger domain 1 protein
40c2yhoE_
not modelled 98.9 35 PDB header:ligase
Chain: E: PDB Molecule:e3 ubiquitin-protein ligase mylip;
PDBTitle: the idol-ube2d complex mediates sterol-dependent degradation of the2 ldl receptor
41c2vjfB_
not modelled 98.9 25 PDB header:ligase
Chain: B: PDB Molecule:mdm4 protein;
PDBTitle: crystal structure of the mdm2-mdmx ring domain heterodimer
42c3eb6A_
not modelled 98.9 38 PDB header:apoptosis, ligase
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 3;
PDBTitle: structure of the ciap2 ring domain bound to ubch5b
43c2d8tA_
not modelled 98.9 22 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger protein 146;
PDBTitle: solution structure of the ring domain of the human ring2 finger protein 146
44c2yqrA_
not modelled 98.8 16 PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0907 protein;
PDBTitle: solution structure of the kh domain in kiaa0907 protein
45c3fl2A_
not modelled 98.8 25 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of the ring domain of the e3 ubiquitin-2 protein ligase uhrf1
46c1z6uA_
not modelled 98.8 24 PDB header:ligase
Chain: A: PDB Molecule:np95-like ring finger protein isoform b;
PDBTitle: np95-like ring finger protein isoform b [homo sapiens]
47d2z0sa2
not modelled 98.8 22 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
48c2hdpB_
not modelled 98.8 20 PDB header:ligase
Chain: B: PDB Molecule:ubiquitin-protein ligase e3 mdm2;
PDBTitle: solution structure of hdm2 ring finger domain
49c2csyA_
not modelled 98.7 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:zinc finger protein 183-like 1;
PDBTitle: solution structure of the ring domain of the zinc finger2 protein 183-like 1
50c2ecnA_
not modelled 98.7 26 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger protein 141;
PDBTitle: solution structure of the ring domain of the human ring2 finger protein 141
51c3u1kB_
not modelled 98.7 23 PDB header:transferase
Chain: B: PDB Molecule:polyribonucleotide nucleotidyltransferase 1, mitochondrial;
PDBTitle: crystal structure of human pnpase
52c2ecyA_
not modelled 98.6 21 PDB header:apoptosis
Chain: A: PDB Molecule:tnf receptor-associated factor 3;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger)" domain of tnf receptor-associated factor 3
53c2yslA_
not modelled 98.6 21 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif-containing protein 31;
PDBTitle: solution structure of the ring domain (1-66) from2 tripartite motif-containing protein 31
54c3l11A_
not modelled 98.6 26 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf168;
PDBTitle: crystal structure of the ring domain of rnf168
55d1fbva4
not modelled 98.6 27 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
56c2eciA_
98.5 19 PDB header:metal binding protein
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein
57c2ectA_
not modelled 98.5 34 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger protein 126;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of ring finger protein 126
58c2h0dB_
not modelled 98.5 20 PDB header:metal binding protein/ligase
Chain: B: PDB Molecule:ubiquitin ligase protein ring2;
PDBTitle: structure of a bmi-1-ring1b polycomb group ubiquitin ligase complex
59c1x4jA_
not modelled 98.5 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ring finger protein 38;
PDBTitle: solution structure of ring finger in ring finger protein 38
60c2djbA_
not modelled 98.5 30 PDB header:gene regulation
Chain: A: PDB Molecule:polycomb group ring finger protein 6;
PDBTitle: solution structure of the ring domain of the human polycomb2 group ring finger protein 6
61c2ea6A_
not modelled 98.5 25 PDB header:transcription
Chain: A: PDB Molecule:ring finger protein 4;
PDBTitle: solution structure of the ring domain of the human ring2 finger protein 4
62c2cklB_
not modelled 98.5 25 PDB header:transcription
Chain: B: PDB Molecule:ubiquitin ligase protein ring2;
PDBTitle: ring1b-bmi1 e3 catalytic domain structure
63c2jmdA_
not modelled 98.5 27 PDB header:ligase
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: solution structure of the ring domain of human traf6
64d1k1ga_
not modelled 98.4 33 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
65d1rmda2
not modelled 98.4 28 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
66d1jm7a_
not modelled 98.4 26 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
67d1chca_
not modelled 98.4 33 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
68d1v87a_
not modelled 98.4 27 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
69c3lrqB_
not modelled 98.4 30 PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim37;
PDBTitle: crystal structure of the u-box domain of human ubiquitin-2 protein ligase (e3), northeast structural genomics3 consortium target hr4604d.
70c2ep4A_
not modelled 98.4 24 PDB header:protein binding
Chain: A: PDB Molecule:ring finger protein 24;
PDBTitle: solution structure of ring finger from human ring finger2 protein 24
71c2ecwA_
not modelled 98.4 25 PDB header:apoptosis
Chain: A: PDB Molecule:tripartite motif-containing protein 30;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain tripartite motif protein 30
72c2ecjA_
not modelled 98.4 35 PDB header:metal binding protein
Chain: A: PDB Molecule:tripartite motif-containing protein 39;
PDBTitle: solution structure of the ring domain of the human2 tripartite motif-containing protein 39
73c2ecvA_
not modelled 98.3 28 PDB header:ligase
Chain: A: PDB Molecule:tripartite motif-containing protein 5;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of tripartite motif-containing protein 5
74c2kizA_
not modelled 98.3 24 PDB header:metal binding protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arkadia;
PDBTitle: solution structure of arkadia ring-h2 finger domain
75c2cklA_
not modelled 98.3 33 PDB header:transcription
Chain: A: PDB Molecule:polycomb group ring finger protein 4;
PDBTitle: ring1b-bmi1 e3 catalytic domain structure
76c2yurA_
not modelled 98.3 29 PDB header:protein binding
Chain: A: PDB Molecule:retinoblastoma-binding protein 6;
PDBTitle: solution structure of the ring finger of human2 retinoblastoma-binding protein 6
77c2l0bA_
not modelled 98.3 29 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase praja-1;
PDBTitle: solution nmr structure of zinc finger domain of e3 ubiquitin-protein2 ligase praja-1 from homo sapiens, northeast structural genomics3 consortium (nesg) target hr4710b
78d1g25a_
not modelled 98.3 23 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
79d1e4ua_
not modelled 98.2 21 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
80c2f42A_
not modelled 98.2 16 PDB header:chaperone
Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1;
PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein
81c2egpA_
not modelled 98.2 25 PDB header:antiviral protein
Chain: A: PDB Molecule:tripartite motif-containing protein 34;
PDBTitle: solution structure of the ring-finger domain from human2 tripartite motif protein 34
82c2xeuA_
not modelled 98.2 26 PDB header:transcription
Chain: A: PDB Molecule:ring finger protein 4;
PDBTitle: ring domain
83c2ct2A_
not modelled 98.2 26 PDB header:ligase
Chain: A: PDB Molecule:tripartite motif protein 32;
PDBTitle: solution structure of the ring domain of the tripartite2 motif protein 32
84c3ztgA_
not modelled 98.2 29 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rbbp6;
PDBTitle: solution structure of the ring finger-like domain of2 retinoblastoma binding protein-6 (rbbp6)
85c1fbvA_
not modelled 98.1 35 PDB header:ligase
Chain: A: PDB Molecule:signal transduction protein cbl;
PDBTitle: structure of a cbl-ubch7 complex: ring domain function in2 ubiquitin-protein ligases
86d2bl5a1
not modelled 98.1 36 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
87d3dplr1
not modelled 98.1 33 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
88d2fmra_
not modelled 98.1 25 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
89d1bora_
not modelled 98.0 30 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
90c2ct0A_
not modelled 98.0 21 PDB header:gene regulation
Chain: A: PDB Molecule:non-smc element 1 homolog;
PDBTitle: solution structure of the ring domain of the non-smc2 element 1 protein
91c3vk6A_
not modelled 98.0 30 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hakai;
PDBTitle: crystal structure of a phosphotyrosine binding domain
92c2eclA_
not modelled 98.0 19 PDB header:metal binding protein
Chain: A: PDB Molecule:ring-box protein 2;
PDBTitle: solution structure of the ring domain of the human ring-box2 protein 2
93c3htkC_
not modelled 98.0 13 PDB header:recombination/replication/ligase
Chain: C: PDB Molecule:e3 sumo-protein ligase mms21;
PDBTitle: crystal structure of mms21 and smc5 complex
94d1t1ha_
not modelled 97.9 15 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
95c2y43B_
not modelled 97.9 27 PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rad18;
PDBTitle: rad18 ubiquitin ligase ring domain structure
96d1ur6b_
not modelled 97.9 30 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
97c2ecmA_
not modelled 97.9 33 PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger and chy zinc finger domain-
PDBTitle: solution structure of the ring domain of the ring finger2 and chy zinc finger domain-containing protein 1 from mus3 musculus
98d2c2la2
not modelled 97.9 17 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
99c2kreA_
not modelled 97.9 13 PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b;
PDBTitle: solution structure of e4b/ufd2a u-box domain
100c3nw0A_
not modelled 97.9 20 PDB header:metal binding protein
Chain: A: PDB Molecule:non-structural maintenance of chromosomes element 1
PDBTitle: crystal structure of mageg1 and nse1 complex
101d1jm7b_
not modelled 97.9 29 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
102c2jrjA_
not modelled 97.9 34 PDB header:ligase
Chain: A: PDB Molecule:ring finger and chy zinc finger domain
PDBTitle: solution structure of the human pirh2 ring-h2 domain.2 northeast structural genomics consortium target ht2b
103d1iyma_
not modelled 97.8 37 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
104d2baya1
not modelled 97.8 11 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
105c3knvA_
not modelled 97.8 20 PDB header:signaling protein
Chain: A: PDB Molecule:tnf receptor-associated factor 2;
PDBTitle: crystal structure of the ring and first zinc finger domains2 of traf2
106c1rmdA_
not modelled 97.8 28 PDB header:dna-binding protein
Chain: A: PDB Molecule:rag1;
PDBTitle: rag1 dimerization domain
107d2c2vv1
not modelled 97.8 16 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
108c3hctA_
not modelled 97.7 25 PDB header:signaling protein/ligase
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: crystal structure of traf6 in complex with ubc13 in the p12 space group
109d1wgma_
not modelled 97.7 9 Fold:RING/U-box
Superfamily:RING/U-box
Family:U-box
110c3hcsA_
not modelled 97.6 27 PDB header:signaling protein
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: crystal structure of the n-terminal domain of traf6
111d2cpqa1
not modelled 97.4 19 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
112c2yu4A_
not modelled 97.2 22 PDB header:apoptosis
Chain: A: PDB Molecule:e3 sumo-protein ligase nse2;
PDBTitle: solution structure of the sp-ring domain in non-smc element2 2 homolog (mms21, s. cerevisiae)
113c2asbA_
not modelled 97.2 15 PDB header:transcription/rna
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: structure of a mycobacterium tuberculosis nusa-rna complex
114c1k0rB_
not modelled 97.2 15 PDB header:transcription
Chain: B: PDB Molecule:nusa;
PDBTitle: crystal structure of mycobacterium tuberculosis nusa
115d1wima_
not modelled 97.1 24 Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
116c1l2fA_
not modelled 97.1 20 PDB header:transcription
Chain: A: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain
117c1hh2P_
not modelled 96.9 20 PDB header:transcription regulation
Chain: P: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima
118c2d8sA_
not modelled 96.6 25 PDB header:metal binding protein
Chain: A: PDB Molecule:cellular modulator of immune recognition;
PDBTitle: solution structure of the ring domain of the human cellular2 modulator of immune recognition protein
119d1vyxa_
not modelled 96.1 18 Fold:RING/U-box
Superfamily:RING/U-box
Family:Variant RING domain
120c3gkuB_
not modelled 95.9 13 PDB header:rna binding protein
Chain: B: PDB Molecule:probable rna-binding protein;
PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940

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