Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA1E959
DateWed Jun 6 09:51:52 BST 2012
Unique Job IDb55b6b7e3227e44e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1y7ta1
Top template information
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
Confidence and coverage
Confidence: 19.9% Coverage: 15%
41 residues ( 15% of your sequence) have been modelled with 19.9% confidence by the single highest scoring template.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKIIILLGFLGATLSAPLIPQRLMSASNSNELLLNLNNGQLLPLQLQGPLNSWIPPFSGI
Secondary structure 















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Disorder  ??












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   .........70.........80.........90.........100.........110.........120
Sequence  LQQQQQAQIPGLSQFSLSALDQFAGLLPNQIPLTGEASFAQGAQAGQVDPLQLQTPPQTQ
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Disorder 




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   .........130.........140.........150.........160.........170.........180
Sequence  PGPSHVMPYVFSFKMPQEQGQMFQYYPVYMVLPWEQPQQTVPRSPQQTRQQQYEEQIPFY
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Disorder  ?










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   .........190.........200.........210.........220.........230.........240
Sequence  AQFGYIPQLAEPAISGGQQQLAFDPQLGTAPEIAVMSTGEEIPYLQKEAINFRHDSAGVF
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   .........250.........260.........270.........
Sequence  MPSTSPKPSTTNVFTSAVDQTITPELPEEKDKTDSLREP
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Disorder  ??
?
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1y7t chain A domain 1

3D model

Region: 1 - 41
Aligned: 41
Modelled: 41
Confidence: 19.9%
Identity: 12%
Fold: NAD(P)-binding Rossmann-fold domains
Superfamily: NAD(P)-binding Rossmann-fold domains
Family: LDH N-terminal domain-like

Phyre2

PDB 1uz5 chain A domain 3

3D model

Region: 211 - 222
Aligned: 12
Modelled: 12
Confidence: 16.2%
Identity: 67%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 1wu2 chain A domain 3

3D model

Region: 211 - 222
Aligned: 12
Modelled: 12
Confidence: 15.7%
Identity: 33%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 3cou chain A

3D model

Region: 122 - 155
Aligned: 28
Modelled: 34
Confidence: 14.4%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16;
PDBTitle: crystal structure of human nudix motif 16 (nudt16)

Phyre2

PDB 2fts chain A domain 3

3D model

Region: 211 - 222
Aligned: 12
Modelled: 12
Confidence: 12.1%
Identity: 67%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2

PDB 1erf chain A

3D model

Region: 6 - 12
Aligned: 7
Modelled: 7
Confidence: 8.2%
Identity: 86%
PDB header:viral protein
Chain: A: PDB Molecule:transmembrane glycoprotein;
PDBTitle: conformational mapping of the n-terminal fusion peptide of2 hiv-1 gp41 using 13c-enhanced fourier transform infrared3 spectroscopy (ftir)

Phyre2

PDB 2pjv chain A

3D model

Region: 6 - 12
Aligned: 7
Modelled: 7
Confidence: 7.9%
Identity: 86%
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: solution structure of hiv-1 gp41 fusion domain bound to dpc2 micelle

Phyre2

PDB 1nij chain A

3D model

Region: 1 - 38
Aligned: 36
Modelled: 38
Confidence: 6.6%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein

Phyre2

PDB 3k9a chain A

3D model

Region: 57 - 66
Aligned: 10
Modelled: 10
Confidence: 6.5%
Identity: 60%
PDB header:viral protein
Chain: A: PDB Molecule:hiv glycoprotein gp41;
PDBTitle: crystal structure of hiv gp41 with mper

Phyre2

PDB 3r0r chain A

3D model

Region: 150 - 184
Aligned: 25
Modelled: 35
Confidence: 6.3%
Identity: 24%
PDB header:virus
Chain: A: PDB Molecule:porcine circovirus 2 (pcv2) capsid protein;
PDBTitle: the 2.3 a structure of porcine circovirus 2

Phyre2
1

d1y7ta1
2

d1uz5a3
3

d1wu2a3
4

c3couA_
5

d2ftsa3
6

c1erfA_
7

c2pjvA_
8

c1nijA_
9

c3k9aA_
10

c3r0rA_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1y7ta1



19.9 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
2d1uz5a3



16.2 67 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
3d1wu2a3



15.7 33 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
4c3couA_



14.4 21 PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16;
PDBTitle: crystal structure of human nudix motif 16 (nudt16)
5d2ftsa3



12.1 67 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
6c1erfA_



8.2 86 PDB header:viral protein
Chain: A: PDB Molecule:transmembrane glycoprotein;
PDBTitle: conformational mapping of the n-terminal fusion peptide of2 hiv-1 gp41 using 13c-enhanced fourier transform infrared3 spectroscopy (ftir)
7c2pjvA_



7.9 86 PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: solution structure of hiv-1 gp41 fusion domain bound to dpc2 micelle
8c1nijA_



6.6 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein
9c3k9aA_



6.5 60 PDB header:viral protein
Chain: A: PDB Molecule:hiv glycoprotein gp41;
PDBTitle: crystal structure of hiv gp41 with mper
10c3r0rA_



6.3 24 PDB header:virus
Chain: A: PDB Molecule:porcine circovirus 2 (pcv2) capsid protein;
PDBTitle: the 2.3 a structure of porcine circovirus 2

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite