Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA1A4T8
DateWed May 9 17:40:18 BST 2012
Unique Job ID6b04240765c7ca74

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1v6ta_
Top template information
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
Confidence and coverage
Confidence: 18.6% Coverage: 8%
12 residues ( 8% of your sequence) have been modelled with 18.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTGRMATLEKSHSSACWRKRSSRTCVEPDRTQDAIHEPRGLSRSHTVLRHRHFVFLPLSS
Secondary structure 



















SS confidence 



























































Disorder  ??????????

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   .........70.........80.........90.........100.........110.........120
Sequence  GAHPSVPPRDHFTHPFFASRVDGTVERGNPALWLCLSSPTGTRATKATKDPTLSSVQASQ
Secondary structure 































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Disorder  ?????

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   .........130.........140.........150....
Sequence  LEEARRQRPRGHQEAFEPAERAWEHNAERERIVP
Secondary structure 






SS confidence 

































Disorder 





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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1v6t chain A

3D model

Region: 61 - 72
Aligned: 12
Modelled: 12
Confidence: 18.6%
Identity: 50%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: LamB/YcsF-like

Phyre2

PDB 2dfa chain A domain 1

3D model

Region: 61 - 72
Aligned: 12
Modelled: 12
Confidence: 17.8%
Identity: 50%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: LamB/YcsF-like

Phyre2

PDB 2i50 chain A

3D model

Region: 89 - 97
Aligned: 9
Modelled: 9
Confidence: 17.8%
Identity: 56%
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 16;
PDBTitle: solution structure of ubp-m znf-ubp domain

Phyre2

PDB 2x5e chain A

3D model

Region: 61 - 72
Aligned: 12
Modelled: 12
Confidence: 17.4%
Identity: 50%
PDB header:unknown function
Chain: A: PDB Molecule:upf0271 protein pa4511;
PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa

Phyre2

PDB 1xw8 chain A

3D model

Region: 61 - 72
Aligned: 12
Modelled: 9
Confidence: 14.3%
Identity: 50%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: LamB/YcsF-like

Phyre2

PDB 1v06 chain A

3D model

Region: 50 - 77
Aligned: 28
Modelled: 28
Confidence: 10.4%
Identity: 18%
PDB header:dna-binding protein
Chain: A: PDB Molecule:hmg box-containing protein 1;
PDBTitle: axh domain of the transcription factor hbp1 from m.musculus

Phyre2

PDB 3i71 chain B

3D model

Region: 8 - 28
Aligned: 21
Modelled: 21
Confidence: 8.0%
Identity: 48%
PDB header:unknown function
Chain: B: PDB Molecule:ethanolamine utilization protein eutk;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutk c-2 terminal domain

Phyre2

PDB 3kys chain C

3D model

Region: 110 - 141
Aligned: 32
Modelled: 32
Confidence: 6.9%
Identity: 28%
PDB header:transcription/protein binding
Chain: C: PDB Molecule:transcriptional enhancer factor tef-1;
PDBTitle: crystal structure of human yap and tead complex

Phyre2

PDB 2g45 chain A domain 1

3D model

Region: 92 - 97
Aligned: 6
Modelled: 6
Confidence: 6.5%
Identity: 67%
Fold: RING/U-box
Superfamily: RING/U-box
Family: Zf-UBP

Phyre2

PDB 2jq3 chain A

3D model

Region: 113 - 126
Aligned: 14
Modelled: 14
Confidence: 6.5%
Identity: 57%
PDB header:lipid binding protein
Chain: A: PDB Molecule:apolipoprotein c-iii;
PDBTitle: structure and dynamics of human apolipoprotein c-iii

Phyre2

PDB 7api chain B

3D model

Region: 65 - 77
Aligned: 13
Modelled: 13
Confidence: 5.7%
Identity: 46%
PDB header:proteinase inhibitor
Chain: B: PDB Molecule:alpha 1-antitrypsin;
PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism

Phyre2

PDB 1whv chain A

3D model

Region: 59 - 77
Aligned: 19
Modelled: 19
Confidence: 5.6%
Identity: 47%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2
1

d1v6ta_
2

d2dfaa1
3

c2i50A_
4

c2x5eA_
5

d1xw8a_
6

c1v06A_
7

c3i71B_
8

c3kysC_
9

d2g45a1
10

c2jq3A_
11

c7apiB_
12

d1whva_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1v6ta_



18.6 50 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
2d2dfaa1



17.8 50 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
3c2i50A_



17.8 56 PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 16;
PDBTitle: solution structure of ubp-m znf-ubp domain
4c2x5eA_



17.4 50 PDB header:unknown function
Chain: A: PDB Molecule:upf0271 protein pa4511;
PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa
5d1xw8a_



14.3 50 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
6c1v06A_



10.4 18 PDB header:dna-binding protein
Chain: A: PDB Molecule:hmg box-containing protein 1;
PDBTitle: axh domain of the transcription factor hbp1 from m.musculus
7c3i71B_



8.0 48 PDB header:unknown function
Chain: B: PDB Molecule:ethanolamine utilization protein eutk;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutk c-2 terminal domain
8c3kysC_



6.9 28 PDB header:transcription/protein binding
Chain: C: PDB Molecule:transcriptional enhancer factor tef-1;
PDBTitle: crystal structure of human yap and tead complex
9d2g45a1



6.5 67 Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
10c2jq3A_



6.5 57 PDB header:lipid binding protein
Chain: A: PDB Molecule:apolipoprotein c-iii;
PDBTitle: structure and dynamics of human apolipoprotein c-iii
11c7apiB_



5.7 46 PDB header:proteinase inhibitor
Chain: B: PDB Molecule:alpha 1-antitrypsin;
PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism
12d1whva_



5.6 47 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite