Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA0PJZ3
DateSat Jun 16 10:31:38 BST 2012
Unique Job IDeab9cd653f9ed7b9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1ga8A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:galactosyl transferase lgtc;
PDBTitle: crystal structure of galacosyltransferase lgtc in complex2 with donor and acceptor sugar analogs.
Confidence and coverage
Confidence:100.0% Coverage: 57%
254 residues ( 57% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKLRSKAAALLLLALAALLLALLSLRAGRAEPPALPARPASAPQRHPAPVPARWPGPGAL
Secondary structure 
SS confidence 
Disorder  ?????
??????????????????????????????
?
????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PGASPGVRRRRPPRPRPRAGRRGAARLEKLARRPGEPRSFQAVLPPELWIHLAVVACGNR
Secondary structure 
SS confidence 
Disorder  ?????????????????????????????
????????????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LEETLVMLKSAVLFSHRKIQFHIFTEDSLKPEFDKQLRQWPDSYTKKFEHRIYPITFSVG
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  NPQEWKKLFKPCAAQRLFLPVILKDVDSLLYVDTDVLFLRPVDDIWKLLRLFNSTQLAAM
Secondary structure 
SS confidence 
Disorder  ???????
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  APEHEIPKIGWYSRFARHPFYGSAGVNSGVMLMNLTRIRSTQFKNSMIPTGLAWEDMLYP
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  LYQKYKNAITWGDQDLLNIIFYFNPECLYVFPCQWNYRPDHCMYGSNCREAEHEGVSVLH
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  GNRGVYHDDKQPTFRALYEAIRDFPFQDNLFQSMYYPLQLKFLETVHTLCGRIPQVFLKQ
Secondary structure 
SS confidence 
Disorder 
?
?????
??
Disorder confidence 
 
   .........430.........440...
Sequence  IEKTMKRAYEKHVIIHVGPNQMH
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ga8 chain A

3D model

Region: 111 - 384
Aligned: 254
Modelled: 274
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:galactosyl transferase lgtc;
PDBTitle: crystal structure of galacosyltransferase lgtc in complex2 with donor and acceptor sugar analogs.

Phyre2

PDB 1ga8 chain A

3D model

Region: 111 - 384
Aligned: 254
Modelled: 274
Confidence: 100.0%
Identity: 20%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: Galactosyltransferase LgtC

Phyre2

PDB 3tzt chain B

3D model

Region: 112 - 383
Aligned: 211
Modelled: 214
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 8;
PDBTitle: the structure of a protein in glycosyl transferase family 8 from2 anaerococcus prevotii.

Phyre2

PDB 1zcy chain A

3D model

Region: 113 - 367
Aligned: 211
Modelled: 223
Confidence: 99.9%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:glycogenin-1;
PDBTitle: apo form of a mutant of glycogenin in which asp159 is replaced by ser

Phyre2

PDB 1ll2 chain A

3D model

Region: 113 - 367
Aligned: 210
Modelled: 219
Confidence: 99.9%
Identity: 16%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: Glycogenin

Phyre2

PDB 1zct chain B

3D model

Region: 113 - 367
Aligned: 211
Modelled: 224
Confidence: 99.9%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:glycogenin-1;
PDBTitle: structure of glycogenin truncated at residue 270 in a2 complex with udp

Phyre2

PDB 1o7q chain A

3D model

Region: 107 - 340
Aligned: 207
Modelled: 225
Confidence: 96.6%
Identity: 17%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: alpha-1,3-galactosyltransferase-like

Phyre2

PDB 1lzi chain A

3D model

Region: 107 - 335
Aligned: 183
Modelled: 212
Confidence: 94.8%
Identity: 16%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: alpha-1,3-galactosyltransferase-like

Phyre2

PDB 2vg2 chain C

3D model

Region: 36 - 156
Aligned: 101
Modelled: 103
Confidence: 84.0%
Identity: 25%
PDB header:transferase
Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase;
PDBTitle: rv2361 with ipp

Phyre2

PDB 1qg8 chain A

3D model

Region: 112 - 239
Aligned: 118
Modelled: 128
Confidence: 56.5%
Identity: 11%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: Spore coat polysaccharide biosynthesis protein SpsA

Phyre2

PDB 2z86 chain D

3D model

Region: 112 - 295
Aligned: 167
Modelled: 184
Confidence: 44.4%
Identity: 11%
PDB header:transferase
Chain: D: PDB Molecule:chondroitin synthase;
PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp

Phyre2

PDB 3bcv chain A

3D model

Region: 112 - 239
Aligned: 111
Modelled: 128
Confidence: 38.0%
Identity: 10%
PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase protein;
PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis

Phyre2

PDB 2x5s chain B

3D model

Region: 207 - 366
Aligned: 147
Modelled: 147
Confidence: 34.4%
Identity: 15%
PDB header:transferase
Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase;
PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.

Phyre2

PDB 2py5 chain A domain 2

3D model

Region: 191 - 221
Aligned: 31
Modelled: 31
Confidence: 29.8%
Identity: 26%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I

Phyre2

PDB 3oj6 chain C

3D model

Region: 191 - 225
Aligned: 34
Modelled: 35
Confidence: 27.5%
Identity: 15%
PDB header:hydrolase
Chain: C: PDB Molecule:blasticidin-s deaminase;
PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis

Phyre2

PDB 2bmw chain A domain 2

3D model

Region: 104 - 212
Aligned: 109
Modelled: 109
Confidence: 26.0%
Identity: 12%
Fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
Family: Reductases

Phyre2

PDB 1wn7 chain A domain 2

3D model

Region: 208 - 232
Aligned: 25
Modelled: 25
Confidence: 24.1%
Identity: 28%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I

Phyre2

PDB 1tvc chain A domain 2

3D model

Region: 104 - 160
Aligned: 57
Modelled: 57
Confidence: 21.7%
Identity: 12%
Fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
Family: Aromatic dioxygenase reductase-like

Phyre2

PDB 4a69 chain A

3D model

Region: 197 - 216
Aligned: 20
Modelled: 20
Confidence: 20.6%
Identity: 30%
PDB header:transcription
Chain: A: PDB Molecule:histone deacetylase 3,;
PDBTitle: structure of hdac3 bound to corepressor and inositol tetraphosphate

Phyre2

PDB 3ckv chain A

3D model

Region: 112 - 221
Aligned: 96
Modelled: 96
Confidence: 20.4%
Identity: 11%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a mycobacterial protein

Phyre2
1
c1ga8A_
2
d1ga8a_
3
c3tztB_
4
c1zcyA_
5
d1ll2a_
6
c1zctB_
7
d1o7qa_
8
d1lzia_
9
c2vg2C_
10
d1qg8a_
11
c2z86D_
12
c3bcvA_
13
c2x5sB_
14
d2py5a2
15
c3oj6C_
16
d2bmwa2
17
d1wn7a2
18
d1tvca2
19
c4a69A_
20
c3ckvA_
21
22
23
24
25
26
27
28
29
30
31
32
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35
36
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ga8A_
100.0 20 PDB header:transferase
Chain: A: PDB Molecule:galactosyl transferase lgtc;
PDBTitle: crystal structure of galacosyltransferase lgtc in complex2 with donor and acceptor sugar analogs.
2d1ga8a_
100.0 20 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Galactosyltransferase LgtC
3c3tztB_
99.9 19 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 8;
PDBTitle: the structure of a protein in glycosyl transferase family 8 from2 anaerococcus prevotii.
4c1zcyA_
99.9 16 PDB header:transferase
Chain: A: PDB Molecule:glycogenin-1;
PDBTitle: apo form of a mutant of glycogenin in which asp159 is replaced by ser
5d1ll2a_
99.9 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycogenin
6c1zctB_
99.9 16 PDB header:transferase
Chain: B: PDB Molecule:glycogenin-1;
PDBTitle: structure of glycogenin truncated at residue 270 in a2 complex with udp
7d1o7qa_
96.6 17 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:alpha-1,3-galactosyltransferase-like
8d1lzia_
94.8 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:alpha-1,3-galactosyltransferase-like
9c2vg2C_
84.0 25 PDB header:transferase
Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase;
PDBTitle: rv2361 with ipp
10d1qg8a_
56.5 11 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Spore coat polysaccharide biosynthesis protein SpsA
11c2z86D_
44.4 11 PDB header:transferase
Chain: D: PDB Molecule:chondroitin synthase;
PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp
12c3bcvA_
38.0 10 PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase protein;
PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis
13c2x5sB_
34.4 15 PDB header:transferase
Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase;
PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.
14d2py5a2
29.8 26 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
15c3oj6C_
27.5 15 PDB header:hydrolase
Chain: C: PDB Molecule:blasticidin-s deaminase;
PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis
16d2bmwa2
26.0 12 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
17d1wn7a2
24.1 28 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
18d1tvca2
21.7 12 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
19c4a69A_
20.6 30 PDB header:transcription
Chain: A: PDB Molecule:histone deacetylase 3,;
PDBTitle: structure of hdac3 bound to corepressor and inositol tetraphosphate
20c3ckvA_
20.4 11 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a mycobacterial protein
21d1wiwa_
not modelled 19.0 45 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
22d1fnda2
not modelled 18.5 12 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
23d2d30a1
not modelled 17.8 20 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
24c3dmoD_
not modelled 17.5 17 PDB header:hydrolase
Chain: D: PDB Molecule:cytidine deaminase;
PDBTitle: 1.6 a crystal structure of cytidine deaminase from2 burkholderia pseudomallei
25d1gawa2
not modelled 17.2 13 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
26c3ew8A_
not modelled 17.1 30 PDB header:hydrolase
Chain: A: PDB Molecule:histone deacetylase 8;
PDBTitle: crystal structure analysis of human hdac8 d101l variant
27c3maxB_
not modelled 17.0 35 PDB header:hydrolase
Chain: B: PDB Molecule:histone deacetylase 2;
PDBTitle: crystal structure of human hdac2 complexed with an n-(2-aminophenyl)2 benzamide
28c2w7tA_
not modelled 16.6 19 PDB header:ligase
Chain: A: PDB Molecule:putative cytidine triphosphate synthase;
PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin
29d1ub2a1
not modelled 16.3 14 Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
30c2ffuA_
not modelled 15.9 14 PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2;
PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2
31c3b8fB_
not modelled 15.8 14 PDB header:hydrolase
Chain: B: PDB Molecule:putative blasticidin s deaminase;
PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis
32d1qhta2
not modelled 15.7 29 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
33d1qfza2
not modelled 15.5 12 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
34c2vwkA_
not modelled 15.3 32 PDB header:dna replication
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
35c1omxB_
not modelled 14.7 9 PDB header:transferase
Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2;
PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2)
36c2p73A_
not modelled 14.5 20 PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase (mannosyltransferase) involved
PDBTitle: crystal structure of a glycosyltransferase involved in the2 glycosylation of the major capsid of pbcv-1
37d1d5aa2
not modelled 14.5 28 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
38c1xhbA_
not modelled 14.2 13 PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1;
PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1
39d1ep3b2
not modelled 14.1 5 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Dihydroorotate dehydrogenase B, PyrK subunit
40d1p35a_
not modelled 13.7 26 Fold:Baculovirus p35 protein
Superfamily:Baculovirus p35 protein
Family:Baculovirus p35 protein
41c1d5aA_
not modelled 13.4 28 PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase);
PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
42d2piaa2
not modelled 13.2 20 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
43d1s5ja2
not modelled 12.9 62 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
44c2ex3I_
not modelled 12.8 26 PDB header:transferase/replication
Chain: I: PDB Molecule:dna polymerase;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
45d1ddga2
not modelled 12.3 10 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:NADPH-cytochrome p450 reductase-like
46c2doqD_
not modelled 12.3 31 PDB header:cell cycle
Chain: D: PDB Molecule:sfi1p;
PDBTitle: crystal structure of sfi1p/cdc31p complex
47d3bl9a1
not modelled 12.2 20 Fold:HIT-like
Superfamily:HIT-like
Family:mRNA decapping enzyme DcpS C-terminal domain
48d2fr5a1
not modelled 12.2 20 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
49c1fncA_
not modelled 12.1 11 PDB header:oxidoreductase (nadp+(a),ferredoxin(a))
Chain: A: PDB Molecule:ferredoxin-nadp+ reductase;
PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states
50d1xhba2
not modelled 11.7 10 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
51c4f7dA_
not modelled 11.3 8 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nadp reductase;
PDBTitle: crystal structure of ferredoxin-nadp reductase from burkholderia2 thailandensis e264
52d1qasa3
not modelled 11.1 27 Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Mammalian PLC
53d1uwza_
not modelled 10.9 27 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
54d1omza_
not modelled 10.8 9 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Exostosin
55d2z3ga1
not modelled 10.2 11 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
56c3bg3B_
not modelled 10.0 13 PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus)
57d1j7ga_
not modelled 9.8 15 Fold:DTD-like
Superfamily:DTD-like
Family:DTD-like
58d1pzta_
not modelled 9.6 16 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:beta 1,4 galactosyltransferase (b4GalT1)
59d1c3pa_
not modelled 9.4 25 Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Histone deacetylase, HDAC
60d1r5ta_
not modelled 9.3 11 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
61c2d7iA_
not modelled 9.2 13 PDB header:transferase
Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10;
PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+
62d1mq0a_
not modelled 9.2 16 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
63d1t64a_
not modelled 9.1 27 Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Histone deacetylase, HDAC
64d1cqxa3
not modelled 9.0 22 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Flavohemoglobin, C-terminal domain
65d1tgoa2
not modelled 8.9 32 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
66c4eh1A_
not modelled 8.8 8 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavohemoprotein;
PDBTitle: crystal structure of the flavohem-like-fad/nad binding domain of2 nitric oxide dioxygenase from vibrio cholerae o1 biovar el tor
67c2gv9B_
not modelled 8.3 29 PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
68d1ih7a2
not modelled 8.3 38 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
69c2vqqA_
not modelled 8.1 55 PDB header:hydrolase
Chain: A: PDB Molecule:histone deacetylase 4;
PDBTitle: structure of hdac4 catalytic domain (a double cysteine-to-2 alanine mutant) bound to a trifluoromethylketone inhbitor
70c2v8wA_
not modelled 7.9 21 PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4e;
PDBTitle: crystallographic and mass spectrometric characterisation of2 eif4e with n7-cap derivatives
71d1jkea_
not modelled 7.8 15 Fold:DTD-like
Superfamily:DTD-like
Family:DTD-like
72d3c10a1
not modelled 7.7 45 Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Histone deacetylase, HDAC
73d1q8ia2
not modelled 7.6 17 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
74c2j83B_
not modelled 7.5 19 PDB header:hydrolase
Chain: B: PDB Molecule:ulilysin;
PDBTitle: ulilysin metalloprotease in complex with batimastat.
75c2j7pA_
not modelled 7.4 16 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
76c2zjtB_
not modelled 7.3 60 PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: crystal structure of dna gyrase b' domain sheds lights on2 the mechanism for t-segment navigation
77d2j07a2
not modelled 7.3 36 Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
78d1fo8a_
not modelled 7.3 12 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:N-acetylglucosaminyltransferase I
79d1yuaa2
not modelled 7.2 38 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment
80d1u5tb1
not modelled 7.2 25 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
81d2ccaa1
not modelled 7.2 15 Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
82c3anwB_
not modelled 7.1 19 PDB header:replication
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: a protein complex essential initiation of dna replication
83c3fkqA_
not modelled 7.1 6 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntrc-like two-domain protein;
PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution
84c1txlA_
not modelled 7.0 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:metal-binding protein yoda;
PDBTitle: crystal structure of metal-binding protein yoda from e.2 coli, pfam duf149
85d1txla_
not modelled 7.0 26 Fold:Lipocalins
Superfamily:Lipocalins
Family:Hypothetical protein YodA
86c2eixA_
not modelled 6.9 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-cytochrome b5 reductase;
PDBTitle: the structure of physarum polycephalum cytochrome b5 reductase
87c3bg5C_
not modelled 6.9 16 PDB header:ligase
Chain: C: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of staphylococcus aureus pyruvate2 carboxylase
88c1cqxB_
not modelled 6.9 19 PDB header:lipid binding protein
Chain: B: PDB Molecule:flavohemoprotein;
PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution
89d1nowa1
not modelled 6.8 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
90d1mwva1
not modelled 6.5 18 Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
91d1rz3a_
not modelled 6.5 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
92c1s5jA_
not modelled 6.4 62 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
93d2ccva1
not modelled 6.3 7 Fold:HPA-like
Superfamily:Agglutinin HPA-like
Family:Agglutinin HPA-like
94d1a8pa2
not modelled 6.2 10 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Reductases
95c2k0mA_
not modelled 6.2 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the uncharacterized protein from2 rhodospirillum rubrum gene locus rru_a0810. northeast3 structural genomics target rrr43
96c1qfjD_
not modelled 6.2 11 PDB header:oxidoreductase
Chain: D: PDB Molecule:protein (flavin reductase);
PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from escherichia2 coli
97c2vldA_
not modelled 6.1 24 PDB header:hydrolase
Chain: A: PDB Molecule:upf0286 protein pyrab01260;
PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi
98d1rgoa1
not modelled 6.1 33 Fold:CCCH zinc finger
Superfamily:CCCH zinc finger
Family:CCCH zinc finger
99c1y6gB_
not modelled 5.8 50 PDB header:transferase/dna
Chain: B: PDB Molecule:dna alpha-glucosyltransferase;
PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution

Binding site prediction 

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