Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA0PJX8
DateThu Apr 26 09:45:40 BST 2012
Unique Job IDb4ebfd22d6e3dfe0

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2gb5B_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
Confidence and coverage
Confidence: 33.7% Coverage: 6%
22 residues ( 6% of your sequence) have been modelled with 33.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MFSLPSLPSWLPGLPSLEWGSSLLDSLLQGLIGALGVLVLNSLLKVYFFVGCANDPQRRP
Secondary structure 
SS confidence 
Disorder  ???????
??????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  EKERLRAQWASLETVHLAGLALFLTVVGSRVAALVVLEFSLRAVSTLLSLGKGSQGAAER
Secondary structure 
SS confidence 
Disorder 
?????
?
?
??????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LQLYLLCQYSLGCGLTCGLSFLQEGAPHRTLNLLLSLGLATLLGLGARRLHRHVCRLYEL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  HSSQRYCGVCLGLLAHAHGLPQLLGRALAIAFAVGDLAAVALINQDFLTTSEAMRFWTPL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  TICYTLLVIYMQEEQRQHPGLQSQVQTVLVRMGGLFVLLLTVGRWLDLLGILVSLLGELW
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 
   .........310.........320.........330.........340...
Sequence  CLVGVRTLLDLCQIQDFPSQRPPVSTPSQPLPSAPQSQSSAPS
Secondary structure 
SS confidence 
Disorder 
???????????????????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2gb5 chain B

3D model

Region: 169 - 190
Aligned: 22
Modelled: 22
Confidence: 33.7%
Identity: 36%
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution

Phyre2

PDB 2jp3 chain A

3D model

Region: 265 - 340
Aligned: 56
Modelled: 61
Confidence: 30.1%
Identity: 27%
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles

Phyre2

PDB 1q7h chain A domain 2

3D model

Region: 224 - 240
Aligned: 17
Modelled: 16
Confidence: 22.8%
Identity: 29%
Fold: Cystatin-like
Superfamily: Pre-PUA domain
Family: Hypothetical protein Ta1423, N-terminal domain

Phyre2

PDB 2jt1 chain A

3D model

Region: 136 - 160
Aligned: 25
Modelled: 25
Confidence: 21.9%
Identity: 40%
PDB header:transcription
Chain: A: PDB Molecule:pefi protein;
PDBTitle: solution nmr structure of pefi (plasmid-encoded fimbriae regulatory)2 protein from salmonella typhimurium. northeast structural genomics3 target str82

Phyre2

PDB 1bsm chain A domain 1

3D model

Region: 1 - 8
Aligned: 8
Modelled: 8
Confidence: 21.4%
Identity: 50%
Fold: Long alpha-hairpin
Superfamily: Fe,Mn superoxide dismutase (SOD), N-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), N-terminal domain

Phyre2

PDB 1ma1 chain A domain 1

3D model

Region: 1 - 8
Aligned: 8
Modelled: 8
Confidence: 14.4%
Identity: 50%
Fold: Long alpha-hairpin
Superfamily: Fe,Mn superoxide dismutase (SOD), N-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), N-terminal domain

Phyre2

PDB 2wff chain 4

3D model

Region: 249 - 257
Aligned: 9
Modelled: 9
Confidence: 12.7%
Identity: 44%
PDB header:virus
Chain: 4: PDB Molecule:p1;
PDB Fragment:capsid protein vp4, residues 1-80 PDBTitle: equine rhinitis a virus

Phyre2

PDB 1mng chain A domain 1

3D model

Region: 1 - 8
Aligned: 8
Modelled: 8
Confidence: 12.1%
Identity: 50%
Fold: Long alpha-hairpin
Superfamily: Fe,Mn superoxide dismutase (SOD), N-terminal domain
Family: Fe,Mn superoxide dismutase (SOD), N-terminal domain

Phyre2

PDB 1nln chain A

3D model

Region: 125 - 139
Aligned: 15
Modelled: 15
Confidence: 12.0%
Identity: 33%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Adenain-like

Phyre2

PDB 1uff chain A

3D model

Region: 313 - 343
Aligned: 31
Modelled: 31
Confidence: 12.0%
Identity: 16%
Fold: SH3-like barrel
Superfamily: SH3-domain
Family: SH3-domain

Phyre2

PDB 3htu chain E

3D model

Region: 174 - 182
Aligned: 9
Modelled: 9
Confidence: 11.7%
Identity: 56%
PDB header:protein transport
Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 25;
PDBTitle: crystal structure of the human vps25-vps20 subcomplex

Phyre2

PDB 2q2f chain A

3D model

Region: 251 - 258
Aligned: 8
Modelled: 7
Confidence: 11.5%
Identity: 38%
PDB header:membrane protein
Chain: A: PDB Molecule:selenoprotein s;
PDBTitle: structure of the human selenoprotein s (vcp-interacting membrane2 protein)

Phyre2

PDB 1x6a chain A domain 2

3D model

Region: 186 - 190
Aligned: 5
Modelled: 5
Confidence: 11.4%
Identity: 80%
Fold: Glucocorticoid receptor-like (DNA-binding domain)
Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
Family: LIM domain

Phyre2

PDB 3eyi chain B

3D model

Region: 138 - 159
Aligned: 22
Modelled: 22
Confidence: 11.4%
Identity: 32%
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:z-dna-binding protein 1;
PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna

Phyre2

PDB 3ks7 chain D

3D model

Region: 225 - 239
Aligned: 15
Modelled: 9
Confidence: 11.3%
Identity: 53%
PDB header:hydrolase
Chain: D: PDB Molecule:putative putative pngase f;
PDBTitle: crystal structure of putative peptide:n-glycosidase f (pngase f)2 (yp_210507.1) from bacteroides fragilis nctc 9343 at 2.30 a3 resolution

Phyre2

PDB 1jun chain B

3D model

Region: 163 - 179
Aligned: 17
Modelled: 17
Confidence: 11.3%
Identity: 29%
PDB header:transcription regulation
Chain: B: PDB Molecule:c-jun homodimer;
PDBTitle: nmr study of c-jun homodimer

Phyre2

PDB 3js4 chain C

3D model

Region: 1 - 8
Aligned: 8
Modelled: 8
Confidence: 11.2%
Identity: 63%
PDB header:oxidoreductase
Chain: C: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of iron superoxide dismutase from anaplasma2 phagocytophilum

Phyre2

PDB 2axt chain M domain 1

3D model

Region: 246 - 257
Aligned: 12
Modelled: 12
Confidence: 11.1%
Identity: 42%
Fold: Single transmembrane helix
Superfamily: Photosystem II reaction center protein M, PsbM
Family: PsbM-like

Phyre2

PDB 1wc9 chain A

3D model

Region: 240 - 303
Aligned: 64
Modelled: 64
Confidence: 10.9%
Identity: 16%
Fold: Ligand-binding domain in the NO signalling and Golgi transport
Superfamily: Ligand-binding domain in the NO signalling and Golgi transport
Family: TRAPP components

Phyre2

PDB 1qqp chain 4

3D model

Region: 249 - 257
Aligned: 9
Modelled: 9
Confidence: 10.6%
Identity: 44%
PDB header:virus
Chain: 4: PDB Molecule:protein (genome polyprotein);
PDBTitle: foot-and-mouth disease virus/ oligosaccharide receptor complex.

Phyre2
1
c2gb5B_
2
c2jp3A_
3
d1q7ha2
4
c2jt1A_
5
d1bsma1
6
d1ma1a1
7
c2wff4_
8
d1mnga1
9
d1nlna_
10
d1uffa_
11
c3htuE_
12
c2q2fA_
13
d1x6aa2
14
c3eyiB_
15
c3ks7D_
16
c1junB_
17
c3js4C_
18
d2axtm1
19
d1wc9a_
20
c1qqp4_
21
22
23
24
25
26
27
28
29
30
31
32
33
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2gb5B_
33.7 36 PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
2c2jp3A_
30.1 27 PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
3d1q7ha2
22.8 29 Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:Hypothetical protein Ta1423, N-terminal domain
4c2jt1A_
21.9 40 PDB header:transcription
Chain: A: PDB Molecule:pefi protein;
PDBTitle: solution nmr structure of pefi (plasmid-encoded fimbriae regulatory)2 protein from salmonella typhimurium. northeast structural genomics3 target str82
5d1bsma1
21.4 50 Fold:Long alpha-hairpin
Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
6d1ma1a1
14.4 50 Fold:Long alpha-hairpin
Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
7c2wff4_
12.7 44 PDB header:virus
Chain: 4: PDB Molecule:p1;
PDB Fragment:capsid protein vp4, residues 1-80 PDBTitle: equine rhinitis a virus
8d1mnga1
12.1 50 Fold:Long alpha-hairpin
Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
9d1nlna_
12.0 33 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
10d1uffa_
12.0 16 Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
11c3htuE_
11.7 56 PDB header:protein transport
Chain: E: PDB Molecule:vacuolar protein-sorting-associated protein 25;
PDBTitle: crystal structure of the human vps25-vps20 subcomplex
12c2q2fA_
11.5 38 PDB header:membrane protein
Chain: A: PDB Molecule:selenoprotein s;
PDBTitle: structure of the human selenoprotein s (vcp-interacting membrane2 protein)
13d1x6aa2
11.4 80 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
14c3eyiB_
11.4 32 PDB header:dna binding protein/dna
Chain: B: PDB Molecule:z-dna-binding protein 1;
PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna
15c3ks7D_
11.3 53 PDB header:hydrolase
Chain: D: PDB Molecule:putative putative pngase f;
PDBTitle: crystal structure of putative peptide:n-glycosidase f (pngase f)2 (yp_210507.1) from bacteroides fragilis nctc 9343 at 2.30 a3 resolution
16c1junB_
11.3 29 PDB header:transcription regulation
Chain: B: PDB Molecule:c-jun homodimer;
PDBTitle: nmr study of c-jun homodimer
17c3js4C_
11.2 63 PDB header:oxidoreductase
Chain: C: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of iron superoxide dismutase from anaplasma2 phagocytophilum
18d2axtm1
11.1 42 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein M, PsbM
Family:PsbM-like
19d1wc9a_
10.9 16 Fold:Ligand-binding domain in the NO signalling and Golgi transport
Superfamily:Ligand-binding domain in the NO signalling and Golgi transport
Family:TRAPP components
20c1qqp4_
10.6 44 PDB header:virus
Chain: 4: PDB Molecule:protein (genome polyprotein);
PDBTitle: foot-and-mouth disease virus/ oligosaccharide receptor complex.
21c1bdeA_
not modelled 10.3 27 PDB header:aids
Chain: A: PDB Molecule:vpr protein;
PDBTitle: helical structure of polypeptides from the c-terminal half2 of hiv-1 vpr, nmr, 20 structures
22c2e62A_
not modelled 9.9 86 PDB header:rna binding protein
Chain: A: PDB Molecule:protein at5g25060;
PDBTitle: solution structure of the cwf21 domain in protein aak25922
23d1vava_
not modelled 9.6 38 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Alginate lyase
24c3ceiA_
not modelled 9.6 63 PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from helicobacter2 pylori
25c1avmA_
not modelled 9.5 50 PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide
26c1byyA_
not modelled 9.5 63 PDB header:membrane protein
Chain: A: PDB Molecule:protein (sodium channel alpha-subunit);
PDBTitle: sodium channel iia inactivation gate
27c2zrrA_
not modelled 9.4 28 PDB header:antimicrobial protein
Chain: A: PDB Molecule:mundticin ks immunity protein;
PDBTitle: crystal structure of an immunity protein that contributes2 to the self-protection of bacteriocin-producing3 enterococcus mundtii 15-1a
28c3bj4B_
not modelled 9.4 50 PDB header:signaling protein
Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt
PDBTitle: the kcnq1 (kv7.1) c-terminus, a multi-tiered scaffold for2 subunit assembly and protein interaction
29c1ciiA_
not modelled 9.3 22 PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
30d1x68a2
not modelled 9.2 60 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
31d1nkza_
not modelled 9.2 50 Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
32c3zquA_
not modelled 9.1 60 PDB header:lyase
Chain: A: PDB Molecule:probable aromatic acid decarboxylase;
PDBTitle: structure of a probable aromatic acid decarboxylase
33c2gpcB_
not modelled 9.1 75 PDB header:oxidoreductase
Chain: B: PDB Molecule:iron superoxide dismutase;
PDBTitle: the crystal structure of the enzyme fe-superoxide dismutase2 from trypanosoma cruzi
34d1jgka_
not modelled 9.0 36 Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Snake venom toxins
35d2pw4a1
not modelled 8.9 50 Fold:Jann2411-like
Superfamily:Jann2411-like
Family:Jann2411-like
36d1tg7a1
not modelled 8.9 33 Fold:Beta-galactosidase LacA, domain 3
Superfamily:Beta-galactosidase LacA, domain 3
Family:Beta-galactosidase LacA, domain 3
37c1mngA_
not modelled 8.6 50 PDB header:oxidoreductase(superoxide acceptor)
Chain: A: PDB Molecule:manganese superoxide dismutase;
PDBTitle: structure-function in e. coli iron superoxide dismutase: comparisons2 with the manganese enzyme from t. thermophilus
38d1j7na3
not modelled 8.5 44 Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:ADP-ribosylating toxins
39c1x9vA_
not modelled 8.3 27 PDB header:viral protein
Chain: A: PDB Molecule:vpr protein;
PDBTitle: dimeric structure of the c-terminal domain of vpr
40d1duga1
not modelled 8.3 30 Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
41c1bl1A_
not modelled 8.3 63 PDB header:hormone receptor
Chain: A: PDB Molecule:parathyroid hormone receptor;
PDBTitle: pth receptor n-terminus fragment, nmr, 1 structure
42d2k4xa1
not modelled 8.2 40 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
43c2kn0A_
not modelled 8.0 18 PDB header:apoptosis
Chain: A: PDB Molecule:fn14;
PDBTitle: solution nmr structure of xenopus fn14
44d1ijda_
not modelled 7.8 44 Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
45c2kwzA_
not modelled 7.8 38 PDB header:viral protein
Chain: A: PDB Molecule:protease ns2-3;
PDBTitle: solution structure of ns2 [60-99]
46c2jo1A_
not modelled 7.8 41 PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
47c1ma1E_
not modelled 7.7 50 PDB header:oxidoreductase
Chain: E: PDB Molecule:superoxide dismutase;
PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum
48c2ejbA_
not modelled 7.6 60 PDB header:lyase
Chain: A: PDB Molecule:probable aromatic acid decarboxylase;
PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus
49d2es9a1
not modelled 7.6 60 Fold:YoaC-like
Superfamily:YoaC-like
Family:YoaC-like
50d1m72a_
not modelled 7.5 11 Fold:Caspase-like
Superfamily:Caspase-like
Family:Caspase catalytic domain
51d1w6ka2
not modelled 7.4 50 Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpene synthases
52c1y32A_
not modelled 7.4 50 PDB header:unknown function
Chain: A: PDB Molecule:humanin;
PDBTitle: nmr structure of humanin in 30% tfe solution
53d2j3wb1
not modelled 7.4 21 Fold:Ligand-binding domain in the NO signalling and Golgi transport
Superfamily:Ligand-binding domain in the NO signalling and Golgi transport
Family:TRAPP components
54d2phcb1
not modelled 7.2 25 Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
55c2zp2B_
not modelled 7.2 17 PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
56c3no7A_
not modelled 7.2 47 PDB header:dna binding protein
Chain: A: PDB Molecule:putative plasmid related protein;
PDBTitle: crystal structure of the centromere-binding protein parb from plasmid2 pcxc100
57d1u2ca1
not modelled 7.2 55 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cadherin-like
Family:Dystroglycan, N-terminal domain
58c2bn3A_
not modelled 7.1 63 PDB header:radiation damage
Chain: A: PDB Molecule:insulin;
PDBTitle: insulin before a high dose x-ray burn
59c3prrL_
not modelled 7.1 53 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
60d2axtl1
not modelled 7.1 53 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein L, PsbL
Family:PsbL-like
61c1s5lL_
not modelled 7.1 53 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
62c3prqL_
not modelled 7.1 53 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
63c2axtL_
not modelled 7.1 53 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
64c1s5ll_
not modelled 7.1 53 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
65c3arcL_
not modelled 7.1 53 PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
66c2axtl_
not modelled 7.1 53 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
67c3bz2L_
not modelled 7.1 53 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer
68c3kziL_
not modelled 7.1 53 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
69c3a0bL_
not modelled 7.1 53 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
70c3bz1L_
not modelled 7.1 53 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer
71c3a0hl_
not modelled 7.1 53 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
72c3a0hL_
not modelled 7.1 53 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
73c3a0bl_
not modelled 7.1 53 PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
74d1whqa_
not modelled 7.1 19 Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
75d1lc0a2
not modelled 7.1 73 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Biliverdin reductase
76d1xb4a2
not modelled 7.0 71 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
77d2v4jb1
not modelled 7.0 50 Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
78d2axti1
not modelled 7.0 24 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like
79c1skhA_
not modelled 7.0 40 PDB header:unknown function
Chain: A: PDB Molecule:major prion protein 2;
PDBTitle: n-terminal (1-30) of bovine prion protein
80c1mk2B_
not modelled 7.0 27 PDB header:transcription
Chain: B: PDB Molecule:madh-interacting protein;
PDBTitle: smad3 sbd complex
81c2cfhA_
not modelled 6.9 13 PDB header:transport
Chain: A: PDB Molecule:trafficking protein particle complex subunit 3;
PDBTitle: structure of the bet3-tpc6b core of trapp
82c3kwrA_
not modelled 6.9 56 PDB header:rna binding protein
Chain: A: PDB Molecule:putative rna-binding protein;
PDBTitle: crystal structure of putative rna-binding protein (np_785364.1) from2 lactobacillus plantarum at 1.45 a resolution
83c2qqpD_
not modelled 6.8 50 PDB header:virus
Chain: D: PDB Molecule:small capsid protein;
PDBTitle: crystal structure of authentic providence virus
84c2phcB_
not modelled 6.6 25 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
85c3hieA_
not modelled 6.6 14 PDB header:exocytosis
Chain: A: PDB Molecule:exocyst complex component sec3;
PDBTitle: structure of the membrane-binding domain of the sec3 subunit2 of the exocyst complex
86d1nuba3
not modelled 6.6 23 Fold:Kazal-type serine protease inhibitors
Superfamily:Kazal-type serine protease inhibitors
Family:Ovomucoid domain III-like
87c2xb0X_
not modelled 6.5 13 PDB header:hydrolase
Chain: X: PDB Molecule:chromo domain-containing protein 1;
PDBTitle: dna-binding domain from saccharomyces cerevisiae chromatin-2 remodelling protein chd1
88c3e5yB_
not modelled 6.5 29 PDB header:transferase
Chain: B: PDB Molecule:trmh family rna methyltransferase;
PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei
89d1j5wa_
not modelled 6.5 28 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
90d2d4pa1
not modelled 6.5 35 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
91d1xmka1
not modelled 6.5 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
92c2becB_
not modelled 6.4 33 PDB header:metal binding protein/transport protein
Chain: B: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: crystal structure of chp2 in complex with its binding2 region in nhe1 and insights into the mechanism of ph3 regulation
93c1znmA_
not modelled 6.4 36 PDB header:zinc finger
Chain: A: PDB Molecule:yy1;
PDBTitle: a zinc finger with an artificial beta-turn, original2 sequence taken from the third zinc finger domain of the3 human transcriptional repressor protein yy1 (ying and yang4 1, a delta transcription factor), nmr, 34 structures
94c2k1vA_
not modelled 6.4 60 PDB header:hormone
Chain: A: PDB Molecule:insulin-like peptide insl5;
PDBTitle: r3/i5 relaxin chimera
95c2kbcA_
not modelled 6.4 60 PDB header:hormone
Chain: A: PDB Molecule:insl5_a-chain;
PDBTitle: solution structure of human insulin-like peptide 5 (insl5)
96d1w2ya_
not modelled 6.3 25 Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:Type II deoxyuridine triphosphatase
97c1facA_
not modelled 6.3 45 PDB header:coagulation factor
Chain: A: PDB Molecule:coagulation factor viii;
PDBTitle: coagulation factor viii, nmr, 1 structure
98c2lgbA_
not modelled 6.3 57 PDB header:hormone
Chain: A: PDB Molecule:insulin a chain;
PDBTitle: human insulin mutant a22gly-b31arg
99d1ecib_
not modelled 6.3 86 Fold:Ectatomin subunits
Superfamily:Ectatomin subunits
Family:Ectatomin subunits

Binding site prediction 

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