Phyre 2 Results for A0PJX2

Email	l.a.kelley@imperial.ac.uk
Description	A0PJX2
Date	Wed Jun 6 09:34:40 BST 2012
Unique Job ID	01e2977e59336040

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template c4acjA_

Top template information

PDB header:immune system
Chain: A: PDB Molecule:wu\:fb25h12 protein,;
PDBTitle: crystal structure of the tldc domain of oxidation resistance protein2 2 from zebrafish

Confidence and coverage

Confidence:

100.0%

Coverage:

77%

166 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.

3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M R G L R W R Y T R L P S Q V E D T L S G E E G N E E E E E E E A A P D P A A A P E D P T V P Q L T E A S Q V L S A S E

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence I R Q L S F H F P P R V T G H P W S L V F C T S R D G F S L Q S L Y R R M E G C S G P V L L V L R D Q D G Q I F G A F S

Secondary structure

SS confidence

Disorder
? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence S S A I R L S K G F Y G T G E T F L F S F S P Q L K V F K W T G S N S F F V K G D L D S L M M G S G S G R F G L W L D G

Secondary structure

SS confidence

Disorder
? ?
?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . .

Sequence D L F R G G S S P C P T F N N E V L A R Q E Q F C I Q E L E A W L L S

Secondary structure

SS confidence

Disorder
? ?
?
?
? ? ? ? ? ?
? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 4acj chain A

Region: 49 - 214
Aligned: 166
Modelled: 166
Confidence: 100.0%
Identity: 52%
PDB header:immune system
Chain: A: PDB Molecule:wu\:fb25h12 protein,;
PDBTitle: crystal structure of the tldc domain of oxidation resistance protein2 2 from zebrafish

Phyre2

PDB 2k8i chain A

Region: 195 - 212
Aligned: 18
Modelled: 18
Confidence: 13.2%
Identity: 28%
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: solution structure of e.coli slyd

Phyre2

PDB 2kfw chain A

Region: 195 - 211
Aligned: 17
Modelled: 17
Confidence: 12.8%
Identity: 29%
PDB header:isomerase
Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase
PDBTitle: solution structure of full-length slyd from e.coli

Phyre2

PDB 2iea chain A domain 2

Region: 80 - 114
Aligned: 35
Modelled: 35
Confidence: 11.4%
Identity: 14%
Fold: Thiamin diphosphate-binding fold (THDP-binding)
Superfamily: Thiamin diphosphate-binding fold (THDP-binding)
Family: TK-like PP module

Phyre2

PDB 1f0c chain B

Region: 101 - 121
Aligned: 21
Modelled: 21
Confidence: 10.4%
Identity: 38%
PDB header:viral protein
Chain: B: PDB Molecule:ice inhibitor;
PDBTitle: structure of the viral serpin crma

Phyre2

PDB 2kpt chain A

Region: 38 - 116
Aligned: 79
Modelled: 79
Confidence: 10.3%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative secreted protein;
PDBTitle: solution nmr structure of the n-terminal domain of cg24962 protein from corynebacterium glutamicum. northeast3 structural genomics consortium target cgr26a

Phyre2

PDB 2kr7 chain A

Region: 195 - 211
Aligned: 17
Modelled: 17
Confidence: 10.2%
Identity: 29%
PDB header:isomerase
Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd;
PDBTitle: solution structure of helicobacter pylori slyd

Phyre2

PDB 3cgn chain A

Region: 195 - 212
Aligned: 18
Modelled: 18
Confidence: 7.7%
Identity: 22%
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of thermophilic slyd

Phyre2

PDB 3pr9 chain A

Region: 195 - 211
Aligned: 17
Modelled: 17
Confidence: 7.6%
Identity: 35%
PDB header:chaperone
Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase;
PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26

Phyre2

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence	M	R	G	L	R	W	R	Y	T	R	L	P	S	Q	V	E	D	T	L	S	G	E	E	G	N	E	E	E	E	E	E	E	A	A	P	D	P	A	A	A	P	E	D	P	T	V	P	Q	L	T	E	A	S	Q	V	L	S	A	S	E
Secondary structure
SS confidence
Disorder	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence	I	R	Q	L	S	F	H	F	P	P	R	V	T	G	H	P	W	S	L	V	F	C	T	S	R	D	G	F	S	L	Q	S	L	Y	R	R	M	E	G	C	S	G	P	V	L	L	V	L	R	D	Q	D	G	Q	I	F	G	A	F	S
Secondary structure
SS confidence
Disorder									?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence	S	S	A	I	R	L	S	K	G	F	Y	G	T	G	E	T	F	L	F	S	F	S	P	Q	L	K	V	F	K	W	T	G	S	N	S	F	F	V	K	G	D	L	D	S	L	M	M	G	S	G	S	G	R	F	G	L	W	L	D	G
Secondary structure
SS confidence
Disorder										?	?														?
Disorder confidence

	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Sequence	D	L	F	R	G	G	S	S	P	C	P	T	F	N	N	E	V	L	A	R	Q	E	Q	F	C	I	Q	E	L	E	A	W	L	L	S
Secondary structure
SS confidence
Disorder								?	?		?			?		?	?	?	?	?	?												?	?	?
Disorder confidence