Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA0M8Q6
DateThu Apr 26 09:16:38 BST 2012
Unique Job IDd0b9711fb78d0575

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2fb4l2
Top template information
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
Confidence and coverage
Confidence:100.0% Coverage: 99%
105 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  GQPKAAPSVTLFPPSSEELQANKATLVCLVSDFYPGAVTVAWKADGSPVKVGVETTKPSK
Secondary structure 
SS confidence 
Disorder  ???????
?????????
??????????
Disorder confidence 
 
   .........70.........80.........90.........100......
Sequence  QSNNKYAASSYLSLTPEQWKSHRSYSCRVTHEGSTVEKTVAPAECS
Secondary structure 
SS confidence 
Disorder 
?????????
?????
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2fb4 chain L domain 2

3D model

Region: 2 - 106
Aligned: 105
Modelled: 105
Confidence: 100.0%
Identity: 94%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1aqk chain L domain 2

3D model

Region: 2 - 106
Aligned: 105
Modelled: 105
Confidence: 100.0%
Identity: 94%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1q0x chain L domain 2

3D model

Region: 2 - 103
Aligned: 102
Modelled: 102
Confidence: 100.0%
Identity: 68%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1mfb chain L domain 2

3D model

Region: 3 - 103
Aligned: 101
Modelled: 101
Confidence: 99.9%
Identity: 71%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1rzf chain L domain 2

3D model

Region: 2 - 103
Aligned: 102
Modelled: 102
Confidence: 99.9%
Identity: 94%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1pg7 chain W domain 2

3D model

Region: 2 - 101
Aligned: 100
Modelled: 100
Confidence: 99.9%
Identity: 71%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1nfd chain E domain 2

3D model

Region: 2 - 105
Aligned: 103
Modelled: 104
Confidence: 99.9%
Identity: 64%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1bfo chain A domain 2

3D model

Region: 2 - 105
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 38%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1kcv chain L domain 2

3D model

Region: 2 - 105
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 38%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1mju chain L domain 2

3D model

Region: 2 - 105
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 40%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1fp5 chain A domain 2

3D model

Region: 3 - 103
Aligned: 101
Modelled: 101
Confidence: 99.9%
Identity: 30%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1c5c chain L domain 2

3D model

Region: 5 - 105
Aligned: 101
Modelled: 101
Confidence: 99.9%
Identity: 41%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1kfa chain L domain 2

3D model

Region: 4 - 105
Aligned: 102
Modelled: 102
Confidence: 99.9%
Identity: 36%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 2hmi chain C domain 2

3D model

Region: 5 - 105
Aligned: 101
Modelled: 101
Confidence: 99.9%
Identity: 41%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1q72 chain L domain 2

3D model

Region: 2 - 104
Aligned: 103
Modelled: 103
Confidence: 99.9%
Identity: 41%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 2arj chain A domain 2

3D model

Region: 2 - 104
Aligned: 103
Modelled: 103
Confidence: 99.9%
Identity: 37%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1igt chain B domain 4

3D model

Region: 5 - 102
Aligned: 97
Modelled: 98
Confidence: 99.9%
Identity: 34%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 2h3n chain D

3D model

Region: 2 - 103
Aligned: 97
Modelled: 102
Confidence: 99.9%
Identity: 87%
PDB header:immune system
Chain: D: PDB Molecule:ig lambda-5;
PDBTitle: crystal structure of a surrogate light chain (lambda5 and2 vpreb) homodimer

Phyre2

PDB 2jel chain L domain 2

3D model

Region: 4 - 104
Aligned: 101
Modelled: 101
Confidence: 99.9%
Identity: 35%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1o0v chain A domain 1

3D model

Region: 5 - 104
Aligned: 99
Modelled: 100
Confidence: 99.9%
Identity: 29%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2
1
d2fb4l2
2
d1aqkl2
3
d1q0xl2
4
d1mfbl2
5
d1rzfl2
6
d1pg7w2
7
d1nfde2
8
d1bfoa2
9
d1kcvl2
10
d1mjul2
11
d1fp5a2
12
d1c5cl2
13
d1kfal2
14
d2hmic2
15
d1q72l2
16
d2arja2
17
d1igtb4
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c2h3nD_
19
d2jell2
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d1o0va1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2fb4l2
100.0 94 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
2d1aqkl2
100.0 94 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
3d1q0xl2
100.0 68 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
4d1mfbl2
99.9 71 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
5d1rzfl2
99.9 94 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
6d1pg7w2
99.9 71 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
7d1nfde2
99.9 64 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
8d1bfoa2
99.9 38 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
9d1kcvl2
99.9 38 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
10d1mjul2
99.9 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
11d1fp5a2
99.9 30 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
12d1c5cl2
99.9 41 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
13d1kfal2
99.9 36 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
14d2hmic2
99.9 41 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
15d1q72l2
99.9 41 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
16d2arja2
99.9 37 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
17d1igtb4
99.9 34 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
18c2h3nD_
99.9 87 PDB header:immune system
Chain: D: PDB Molecule:ig lambda-5;
PDBTitle: crystal structure of a surrogate light chain (lambda5 and2 vpreb) homodimer
19d2jell2
99.9 35 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
20d1o0va1
99.9 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
21d1lk3l2
not modelled 99.9 38 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
22d1uwel2
not modelled 99.9 35 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
23c1cqkB_
not modelled 99.9 31 PDB header:immune system
Chain: B: PDB Molecule:ch3 domain of mak33 antibody;
PDBTitle: crystal structure of the ch3 domain from the mak33 antibody
24d1igyb4
not modelled 99.9 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
25d1cqka_
not modelled 99.9 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
26c1cqkA_
not modelled 99.9 31 PDB header:immune system
Chain: A: PDB Molecule:ch3 domain of mak33 antibody;
PDBTitle: crystal structure of the ch3 domain from the mak33 antibody
27d1c5ch2
not modelled 99.9 35 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
28d1l6xa2
not modelled 99.9 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
29d1i1ca2
not modelled 99.9 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
30d1uvqa1
not modelled 99.9 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
31d1iaka1
not modelled 99.9 28 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
32d1klub1
not modelled 99.9 30 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
33c3lqzA_
not modelled 99.9 25 PDB header:immune system
Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dp alpha 1 chain;
PDBTitle: crystal structure of hla-dp2
34d1pfca_
not modelled 99.9 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
35d1es0a1
not modelled 99.9 28 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
36d2q86b2
not modelled 99.9 35 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
37c1s9vA_
not modelled 99.9 29 PDB header:immune system
Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dq(3)
PDBTitle: crystal structure of hla-dq2 complexed with deamidated2 gliadin peptide
38d1wejh2
not modelled 99.9 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
39c2q6wD_
not modelled 99.9 28 PDB header:immune system
Chain: D: PDB Molecule:hla class ii histocompatibility antigen, dr
PDBTitle: the structure of hla-dra, drb3*0101 (dr52a) with bound2 platelet integrin peptide associated with fetal and3 neonatal alloimmune thrombocytopenia
40d1nldh2
not modelled 99.9 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
41d1ogae2
not modelled 99.9 34 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
42d1fnga1
not modelled 99.9 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
43c2p24A_
not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class ii histocompatibility antigen, a-u alpha chain;
PDBTitle: i-au/mbp125-135
44d1s9va1
not modelled 99.9 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
45d1kcrh2
not modelled 99.9 30 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
46d1deeb2
not modelled 99.9 24 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
47d1klua1
not modelled 99.9 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
48c2bc4C_
not modelled 99.9 33 PDB header:immune system
Chain: C: PDB Molecule:hla class ii histocompatibility antigen, dm
PDBTitle: crystal structure of hla-dm
49c1iebD_
not modelled 99.9 32 PDB header:histocompatibility antigen
Chain: D: PDB Molecule:mhc class ii i-ek;
PDBTitle: histocompatibility antigen
50c2xpgB_
not modelled 99.9 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of a mhc class i-peptide complex
51d1ow0a2
not modelled 99.9 36 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
52d2ig2h2
not modelled 99.9 36 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
53d1fngb1
not modelled 99.9 30 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
54c1f3jD_
not modelled 99.9 27 PDB header:immune system
Chain: D: PDB Molecule:h-2 class ii histocompatibility antigen;
PDBTitle: histocompatibility antigen i-ag7
55d1iakb1
not modelled 99.9 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
56c1sebB_
not modelled 99.9 33 PDB header:complex (mhc ii/peptide/toxin)
Chain: B: PDB Molecule:hla class ii histocompatibility antigen;
PDBTitle: complex of the human mhc class ii glycoprotein hla-dr1 and2 the bacterial superantigen seb
57c1mhcA_
not modelled 99.8 21 PDB header:histocompatibility antigen/peptide
Chain: A: PDB Molecule:mhc class i antigen h2-m3;
PDBTitle: model of mhc class i h2-m3 with nonapeptide from rat nd1 refined at2 2.3 angstroms resolution
58d2ck0l2
not modelled 99.8 37 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
59d1t66d2
not modelled 99.8 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
60d2iada1
not modelled 99.8 28 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
61d1muja1
not modelled 99.8 28 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
62c3p73A_
not modelled 99.8 24 PDB header:immune system
Chain: A: PDB Molecule:mhc rfp-y class i alpha chain;
PDBTitle: crystal structures of the chicken yf1*7.1 molecule
63c3o8xB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: recognition of glycolipid antigen by inkt cell tcr
64d1fv1b1
not modelled 99.8 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
65d1mcoh2
not modelled 99.8 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
66d1dn0b2
not modelled 99.8 26 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
67c3fonA_
not modelled 99.8 20 PDB header:immune system
Chain: A: PDB Molecule:mhc;
PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide vndifeai
68c3ecbB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of mouse h-2dd in complex with peptide2 p18-i10 derived from human immunodeficiency virus envelope3 glycoprotein 120
69c3mrgB_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with hcv2 ns3-1073-1081 nonapeptide
70c3pwnB_
not modelled 99.8 23 PDB header:protein binding
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: human class i mhc hla-a2 in complex with the hud (g2l) peptide variant
71c3pwnE_
not modelled 99.8 23 PDB header:protein binding
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: human class i mhc hla-a2 in complex with the hud (g2l) peptide variant
72c3nfjE_
not modelled 99.8 23 PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: recognition of peptide-mhc by a v-delta/v-beta tcr
73c3ox8E_
not modelled 99.8 23 PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of hla a*02:03 bound to hbv core 18-27
74c3he7B_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of mouse cd1d-alpha-galactosylceramide with mouse2 valpha14-vbeta7 nkt tcr
75d3c2ah2
not modelled 99.8 30 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
76c3rwgB_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: rhesus macaque mhc class i molecule mamu-b*17-mw9
77d1c16a1
not modelled 99.8 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
78c3mrkB_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with afp1372 nonapeptide
79c3qdaA_
not modelled 99.8 23 PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of w95l beta-2 microglobulin
80c3qi9B_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of mouse cd1d-alpha-phosphotidylinositol with mouse2 valpha14-vbeta6 2a3-d nkt tcr
81c3arfB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: ternary crystal structure of the mouse nkt tcr-cd1d-c20:2
82c3ilqD_
not modelled 99.8 21 PDB header:immune system
Chain: D: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mcd1d with bound glycolipid bbgl-2c from2 borrelia burgdorferi
83c2yf6A_
not modelled 99.8 19 PDB header:immune system
Chain: A: PDB Molecule:major histocompatibility complex class i glycoprotein
PDBTitle: complex of a b21 chicken mhc class i molecule and a 10mer2 chicken peptide
84c3he6B_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of mouse cd1d-alpha-galactosylceramide with mouse2 valpha14-vbeta8.2 nkt tcr
85c3ubxB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the mouse cd1d-c20:2-agalcer-l363 mab fab complex
86c3ardB_
not modelled 99.8 20 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: ternary crystal structure of the mouse nkt tcr-cd1d-3'deoxy-alpha-2 galactosylceramide
87c3e6hB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: mhc class i h-2dd heavy chain complexed with beta-22 microglobulin and a variant peptide, pi10, from the human3 immunodeficiency virus (bal) envelope glycoprotein 120
88c3areB_
not modelled 99.8 20 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: ternary crystal structure of the mouse nkt tcr-cd1d-4'deoxy-alpha-2 galactosylceramide
89d1igtb3
not modelled 99.8 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
90c3t1fB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the mouse cd1d-glc-dag-s2 complex
91c3c8kB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: the crystal structure of ly49c bound to h-2kb
92c3gmlB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mouse cd1d in complex with c6ph
93c3gmqB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mouse cd1d expressed in sf9 cells, no ligand added
94c3gmoB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mouse cd1d in complex with c8phf
95c3gmmB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mouse cd1d in complex with c8ph
96c3gmnB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mouse cd1d in complex with c10ph
97c3gmpB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mouse cd1d in complex with pbs-25
98c1zhbJ_
not modelled 99.8 21 PDB header:immune system
Chain: J: PDB Molecule:h-2 class i histocompatibility antigen, d-b
PDBTitle: crystal structure of the murine class i major2 histocompatibility complex of h-2db, b2-microglobulin, and3 a 9-residue peptide derived from rat dopamine beta-4 monooxigenase
99c3ilpB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mcd1d with bound glycolipid bbgl-2f from2 borrelia burgdorferi
100c3gmrB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mouse cd1d in complex with c8ph, different space group
101d1k8ia1
not modelled 99.8 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
102d1orqb2
not modelled 99.8 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
103c3dmmB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of the cd8 alpha beta/h-2dd complex
104c3e6fB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: mhc class i h-2dd heavy chain complexed with beta-22 microglobulin and a variant peptide, pa9, from the human3 immunodeficiency virus (bal) envelope glycoprotein 120
105c2ve6E_
not modelled 99.8 21 PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of a murine mhc class i h2-db molecule in2 complex with a photocleavable peptide
106c3u0pB_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of human cd1d-lysophosphatidylcholine
107c3rl2B_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: hiv nef derived peptide nef73 complexed to hla-a*0301
108c2ve6B_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of a murine mhc class i h2-db molecule in2 complex with a photocleavable peptide
109d1osph2
not modelled 99.8 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
110d1h0db2
not modelled 99.8 30 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
111c3mrdB_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with hcmv2 pp65-495-503 nonapeptide v6g variant
112c1s7tB_
not modelled 99.8 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major2 histocompatibility complex h-2kb in complex with lcmv-3 derived gp33 index peptide and three of its escape variants
113c3vfoB_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of peptide-hla complex, hla mutant
114c3vfpB_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of peptide-hla complex, hla mutant
115c3vfwB_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of peptide-hla complex, peptide mutant
116c3vh8E_
not modelled 99.8 23 PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: kir3dl1 in complex with hla-b*5701
117c3skmB_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of a peptide-hla structure
118c3t8xD_
not modelled 99.8 23 PDB header:immune system
Chain: D: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of human cd1b in complex with synthetic antigenic2 diacylsulfoglycolipid sgl12 and endogenous spacer
119c3vh8B_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: kir3dl1 in complex with hla-b*5701
120c3rewB_
not modelled 99.8 23 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of an lmp2a-derived peptide bound to human class i2 mhc hla-a2

Binding site prediction 

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