Phyre 2 Results for A0JLT2

Email	l.a.kelley@imperial.ac.uk
Description	A0JLT2
Date	Tue Apr 3 15:10:21 BST 2012
Unique Job ID	d2d26d79caee891d

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template d2gqba1

Top template information

Fold:RPA2825-like
Superfamily:RPA2825-like
Family:RPA2825-like

Confidence and coverage

Confidence:

23.3%

Coverage:

18%

43 residues ( 18% of your sequence) have been modelled with 23.3% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

Please note: You must be registered and logged in to use Phyrealarm.

Warning: 65% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M E N F T A L F G A Q A D P P P P P T A L G F G P G K P P P P P P P P A G G G P G T A P P P T A A T A P P G A D K S G A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ?
? ? ?
?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence G C G P F Y L M R E L P G S T E L T G S T N L I T H Y N L E Q A Y N K F C G K K V K E K L S N F L P D L P G M I D L P G

Secondary structure

SS confidence

Disorder
? ? ? ? ? ? ? ? ? ?
? ?
? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence S H D N S S L R S L I E K P P I L S S S F N P I T G T M L A G F R L H T G P L P E Q C R L M H I Q P P K K K N K H K H K

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
?
? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence Q S R T Q D P V P P E T P S D S D H K K K K K K K E E D P D R K R K K K E K K K K K N R H S P D H P G M G S S Q A S S S

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . .

Sequence S S L R

Secondary structure

SS confidence

Disorder ? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 2gqb chain A domain 1

Region: 6 - 57
Aligned: 43
Modelled: 52
Confidence: 23.3%
Identity: 47%
Fold: RPA2825-like
Superfamily: RPA2825-like
Family: RPA2825-like

Phyre2

PDB 2grg chain A domain 1

Region: 104 - 154
Aligned: 49
Modelled: 51
Confidence: 15.8%
Identity: 24%
Fold: Profilin-like
Superfamily: YNR034W-A-like
Family: YNR034W-A-like

Phyre2

PDB 3kys chain C

Region: 76 - 103
Aligned: 28
Modelled: 28
Confidence: 9.4%
Identity: 32%
PDB header:transcription/protein binding
Chain: C: PDB Molecule:transcriptional enhancer factor tef-1;
PDBTitle: crystal structure of human yap and tead complex

Phyre2

PDB 3dbo chain A

Region: 2 - 14
Aligned: 13
Modelled: 13
Confidence: 9.3%
Identity: 62%
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis

Phyre2

PDB 1dxs chain A

Region: 158 - 164
Aligned: 7
Modelled: 7
Confidence: 9.1%
Identity: 57%
Fold: SAM domain-like
Superfamily: SAM/Pointed domain
Family: SAM (sterile alpha motif) domain

Phyre2

PDB 3q87 chain A

Region: 89 - 111
Aligned: 23
Modelled: 23
Confidence: 7.8%
Identity: 26%
PDB header:transferase activator/transferase
Chain: A: PDB Molecule:putative uncharacterized protein ecu08_1170;
PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112

Phyre2

PDB 1kcf chain A domain 1

Region: 107 - 134
Aligned: 28
Modelled: 28
Confidence: 7.5%
Identity: 25%
Fold: LEM/SAP HeH motif
Superfamily: SAP domain
Family: SAP domain

Phyre2

PDB 3gn6 chain B

Region: 48 - 69
Aligned: 22
Modelled: 22
Confidence: 7.2%
Identity: 45%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ct0912, orfan protein with a ferredoxin-like domain repeat;
PDBTitle: crystal structure of ct0912, orfan protein from chlorobium tepidum2 with a ferredoxin-like domain repeat (np_661805.1) from chlorobium3 tepidum tls at 1.80 a resolution

Phyre2

PDB 1k4z chain A

Region: 158 - 165
Aligned: 8
Modelled: 8
Confidence: 7.2%
Identity: 50%
Fold: Single-stranded right-handed beta-helix
Superfamily: C-terminal domain of adenylylcyclase associated protein
Family: C-terminal domain of adenylylcyclase associated protein

Phyre2

PDB 2eqo chain A

Region: 126 - 142
Aligned: 17
Modelled: 17
Confidence: 7.1%
Identity: 24%
PDB header:transcription
Chain: A: PDB Molecule:tnf receptor-associated factor 3-interacting
PDBTitle: solution structure of the stn_traf3ip1_nd domain of2 interleukin 13 receptor alpha 1-binding protein-1 [homo3 sapiens]

Phyre2

PDB 2h4o chain A domain 1

Region: 87 - 102
Aligned: 16
Modelled: 16
Confidence: 6.2%
Identity: 31%
Fold: YonK-like
Superfamily: YonK-like
Family: Yonk-like

Phyre2

PDB 2pw6 chain A domain 1

Region: 64 - 101
Aligned: 38
Modelled: 38
Confidence: 5.8%
Identity: 8%
Fold: Phosphorylase/hydrolase-like
Superfamily: LigB-like
Family: LigB-like

Phyre2

PDB 1k8f chain A

Region: 158 - 165
Aligned: 8
Modelled: 8
Confidence: 5.8%
Identity: 50%
Fold: Single-stranded right-handed beta-helix
Superfamily: C-terminal domain of adenylylcyclase associated protein
Family: C-terminal domain of adenylylcyclase associated protein

Phyre2

PDB 2b0r chain B

Region: 158 - 165
Aligned: 8
Modelled: 8
Confidence: 5.7%
Identity: 38%
PDB header:unknown function
Chain: B: PDB Molecule:possible adenyl cyclase-associated protein;
PDBTitle: crystal structure of cyclase-associated protein from2 cryptosporidium parvum

Phyre2

PDB 2j9w chain B

Region: 68 - 97
Aligned: 30
Modelled: 30
Confidence: 5.4%
Identity: 33%
PDB header:protein transport
Chain: B: PDB Molecule:vps28-prov protein;
PDBTitle: structural insight into the escrt-i-ii link and its role in2 mvb trafficking

Phyre2

PDB 1gzs chain B

Region: 49 - 66
Aligned: 18
Modelled: 18
Confidence: 5.2%
Identity: 50%
Fold: SopE-like GEF domain
Superfamily: SopE-like GEF domain
Family: SopE-like GEF domain

Phyre2