Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA0AV96
DateFri May 25 09:48:37 BST 2012
Unique Job ID508d712d64f673b7

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2ghpC_
Top template information
PDB header:rna binding protein
Chain: C: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: crystal structure of the n-terminal 3 rna binding domains of the yeast2 splicing factor prp24
Confidence and coverage
Confidence:100.0% Coverage: 38%
228 residues ( 38% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
292 residues ( 49%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 61% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTAEDSTAAMSSDSAAGSSAKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPP
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Disorder  ????







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????

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   .........70.........80.........90.........100.........110.........120
Sequence  GWEGPHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCH
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Disorder  ???????????
















































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   .........130.........140.........150.........160.........170.........180
Sequence  KHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLD
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?


?
?????
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   .........190.........200.........210.........220.........230.........240
Sequence  VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED
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Disorder 



?????????





















???????







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   .........250.........260.........270.........280.........290.........300
Sequence  VMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNN
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   .........310.........320.........330.........340.........350.........360
Sequence  LNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQQPSYVYSCDPYTLAYYGYP
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Disorder 

??











???????
?????????????????????????????????
??
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   .........370.........380.........390.........400.........410.........420
Sequence  YNALIGPNRDYFVKAGSIRGRGRGAAGNRAPGPRGSYLGGYSAGRGIYSRYHEGKGKQQE
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Disorder  ????????
???????????????????????????????????????????????????
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   .........430.........440.........450.........460.........470.........480
Sequence  KGYELVPNLEIPTVNPVAIKPGTVAIPAIGAQYSMFPAAPAPKMIEDGKIHTVEHMISPI
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Disorder  ????????????????????????????????????????????????????????????
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   .........490.........500.........510.........520.........530.........540
Sequence  AVQPDPASAAAAAAAAAAAAAAVIPTVSTPPPFQGRPITPVYTVAPNVQRIPTAGIYGAS
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Disorder  ????????????????????????????????????????????????????????????
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   .........550.........560.........570.........580.........590...
Sequence  YVPFAAPATATIATLQKNAAAAAAMYGGYAGYIPQAFPAAAIQVPIPDVYQTY
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Disorder  ???????????????????????????


?

?????????



???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2ghp chain C

3D model

Region: 71 - 320
Aligned: 228
Modelled: 239
Confidence: 100.0%
Identity: 18%
PDB header:rna binding protein
Chain: C: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: crystal structure of the n-terminal 3 rna binding domains of the yeast2 splicing factor prp24

Phyre2

PDB 3h2u chain D

3D model

Region: 69 - 332
Aligned: 252
Modelled: 264
Confidence: 100.0%
Identity: 18%
PDB header:cell adhesion
Chain: D: PDB Molecule:raver-1;
PDBTitle: human raver1 rrm1, rrm2, and rrm3 domains in complex with2 human vinculin tail domain vt

Phyre2

PDB 3s01 chain A

3D model

Region: 68 - 322
Aligned: 198
Modelled: 203
Confidence: 100.0%
Identity: 18%
PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l;
PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution

Phyre2

PDB 2adc chain A

3D model

Region: 63 - 319
Aligned: 198
Modelled: 199
Confidence: 100.0%
Identity: 20%
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1;
PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd34 complexed with cucucu rna

Phyre2

PDB 1qm9 chain A

3D model

Region: 70 - 319
Aligned: 191
Modelled: 196
Confidence: 100.0%
Identity: 20%
PDB header:ribonucleoprotein
Chain: A: PDB Molecule:polypyrimidine tract-binding protein;
PDBTitle: nmr, representative structure

Phyre2

PDB 3sde chain B

3D model

Region: 71 - 238
Aligned: 159
Modelled: 168
Confidence: 100.0%
Identity: 25%
PDB header:rna binding protein
Chain: B: PDB Molecule:non-pou domain-containing octamer-binding protein;
PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono

Phyre2

PDB 2go9 chain A

3D model

Region: 68 - 320
Aligned: 154
Modelled: 156
Confidence: 99.9%
Identity: 27%
PDB header:rna binding protein
Chain: A: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: rrm domains 1 and 2 of prp24 from s. cerevisiae

Phyre2

PDB 2yh0 chain A

3D model

Region: 70 - 322
Aligned: 182
Modelled: 182
Confidence: 99.9%
Identity: 23%
PDB header:transcription
Chain: A: PDB Molecule:splicing factor u2af 65 kda subunit;
PDBTitle: solution structure of the closed conformation of human u2af65 tandem2 rrm1 and rrm2 domains

Phyre2

PDB 2qfj chain A

3D model

Region: 71 - 321
Aligned: 170
Modelled: 171
Confidence: 99.9%
Identity: 25%
PDB header:transcription repressor/dna
Chain: A: PDB Molecule:fbp-interacting repressor;
PDBTitle: crystal structure of first two rrm domains of fir bound to2 ssdna from a portion of fuse

Phyre2

PDB 1u1q chain A

3D model

Region: 66 - 321
Aligned: 170
Modelled: 171
Confidence: 99.9%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 1rkj chain A

3D model

Region: 63 - 319
Aligned: 168
Modelled: 168
Confidence: 99.9%
Identity: 23%
PDB header:transcription/rna
Chain: A: PDB Molecule:nucleolin;
PDBTitle: solution structure of the complex formed by the two n-2 terminal rna-binding domains of nucleolin and a pre-rrna3 target

Phyre2

PDB 2dhs chain A

3D model

Region: 58 - 317
Aligned: 174
Modelled: 174
Confidence: 99.9%
Identity: 29%
PDB header:rna binding protein
Chain: A: PDB Molecule:cug triplet repeat rna-binding protein 1;
PDBTitle: solution structure of nucleic acid binding protein cugbp1ab2 and its binding study with dna and rna

Phyre2

PDB 1cvj chain F

3D model

Region: 71 - 294
Aligned: 126
Modelled: 127
Confidence: 99.9%
Identity: 30%
PDB header:gene regulation/rna
Chain: F: PDB Molecule:polyadenylate binding protein 1;
PDBTitle: x-ray crystal structure of the poly(a)-binding protein in2 complex with polyadenylate rna

Phyre2

PDB 2cjk chain A

3D model

Region: 68 - 319
Aligned: 159
Modelled: 160
Confidence: 99.9%
Identity: 21%
PDB header:rna-binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 4;
PDBTitle: structure of the rna binding domain of hrp1 in complex with2 rna

Phyre2

PDB 1fnx chain H

3D model

Region: 68 - 236
Aligned: 166
Modelled: 169
Confidence: 99.9%
Identity: 22%
PDB header:immune system/rna
Chain: H: PDB Molecule:hu antigen c;
PDBTitle: solution structure of the huc rbd1-rbd2 complexed with the2 au-rich element

Phyre2

PDB 1b7f chain A

3D model

Region: 69 - 231
Aligned: 160
Modelled: 163
Confidence: 99.9%
Identity: 26%
PDB header:rna-binding protein/rna
Chain: A: PDB Molecule:protein (sxl-lethal protein);
PDBTitle: sxl-lethal protein/rna complex

Phyre2

PDB 3md3 chain A

3D model

Region: 71 - 316
Aligned: 157
Modelled: 158
Confidence: 99.9%
Identity: 31%
PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the first two rrm domains of yeast poly(u)2 binding protein (pub1)

Phyre2

PDB 2f3j chain A

3D model

Region: 40 - 150
Aligned: 110
Modelled: 110
Confidence: 99.8%
Identity: 14%
PDB header:transport protein
Chain: A: PDB Molecule:rna and export factor binding protein 2;
PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155).

Phyre2

PDB 1hl6 chain A

3D model

Region: 52 - 150
Aligned: 98
Modelled: 99
Confidence: 99.8%
Identity: 29%
Fold: Ferredoxin-like
Superfamily: RNA-binding domain, RBD
Family: Canonical RBD

Phyre2

PDB 2i38 chain A

3D model

Region: 53 - 152
Aligned: 95
Modelled: 100
Confidence: 99.8%
Identity: 22%
PDB header:rna binding protein/chimera
Chain: A: PDB Molecule:fusion protein consists of immunoglobin g-
PDBTitle: solution structure of the rrm of srp20

Phyre2
1

c2ghpC_
2

c3h2uD_
3

c3s01A_
4

c2adcA_
5

c1qm9A_
6

c3sdeB_
7

c2go9A_
8

c2yh0A_
9

c2qfjA_
10

d1u1qa_
11

c1rkjA_
12

c2dhsA_
13

c1cvjF_
14

c2cjkA_
15

c1fnxH_
16

c1b7fA_
17

c3md3A_
18

c2f3jA_
19

d1hl6a_
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c2i38A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ghpC_



100.0 18 PDB header:rna binding protein
Chain: C: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: crystal structure of the n-terminal 3 rna binding domains of the yeast2 splicing factor prp24
2c3h2uD_



100.0 18 PDB header:cell adhesion
Chain: D: PDB Molecule:raver-1;
PDBTitle: human raver1 rrm1, rrm2, and rrm3 domains in complex with2 human vinculin tail domain vt
3c3s01A_



100.0 18 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l;
PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution
4c2adcA_



100.0 20 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1;
PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd34 complexed with cucucu rna
5c1qm9A_



100.0 20 PDB header:ribonucleoprotein
Chain: A: PDB Molecule:polypyrimidine tract-binding protein;
PDBTitle: nmr, representative structure
6c3sdeB_



100.0 25 PDB header:rna binding protein
Chain: B: PDB Molecule:non-pou domain-containing octamer-binding protein;
PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono
7c2go9A_



99.9 27 PDB header:rna binding protein
Chain: A: PDB Molecule:u4/u6 snrna-associated splicing factor prp24;
PDBTitle: rrm domains 1 and 2 of prp24 from s. cerevisiae
8c2yh0A_



99.9 23 PDB header:transcription
Chain: A: PDB Molecule:splicing factor u2af 65 kda subunit;
PDBTitle: solution structure of the closed conformation of human u2af65 tandem2 rrm1 and rrm2 domains
9c2qfjA_



99.9 25 PDB header:transcription repressor/dna
Chain: A: PDB Molecule:fbp-interacting repressor;
PDBTitle: crystal structure of first two rrm domains of fir bound to2 ssdna from a portion of fuse
10d1u1qa_



99.9 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
11c1rkjA_



99.9 23 PDB header:transcription/rna
Chain: A: PDB Molecule:nucleolin;
PDBTitle: solution structure of the complex formed by the two n-2 terminal rna-binding domains of nucleolin and a pre-rrna3 target
12c2dhsA_



99.9 29 PDB header:rna binding protein
Chain: A: PDB Molecule:cug triplet repeat rna-binding protein 1;
PDBTitle: solution structure of nucleic acid binding protein cugbp1ab2 and its binding study with dna and rna
13c1cvjF_



99.9 30 PDB header:gene regulation/rna
Chain: F: PDB Molecule:polyadenylate binding protein 1;
PDBTitle: x-ray crystal structure of the poly(a)-binding protein in2 complex with polyadenylate rna
14c2cjkA_



99.9 21 PDB header:rna-binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 4;
PDBTitle: structure of the rna binding domain of hrp1 in complex with2 rna
15c1fnxH_



99.9 22 PDB header:immune system/rna
Chain: H: PDB Molecule:hu antigen c;
PDBTitle: solution structure of the huc rbd1-rbd2 complexed with the2 au-rich element
16c1b7fA_



99.9 26 PDB header:rna-binding protein/rna
Chain: A: PDB Molecule:protein (sxl-lethal protein);
PDBTitle: sxl-lethal protein/rna complex
17c3md3A_



99.9 31 PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the first two rrm domains of yeast poly(u)2 binding protein (pub1)
18c2f3jA_



99.8 14 PDB header:transport protein
Chain: A: PDB Molecule:rna and export factor binding protein 2;
PDBTitle: the solution structure of the ref2-i mrna export factor2 (residues 1-155).
19d1hl6a_



99.8 29 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
20c2i38A_



99.8 22 PDB header:rna binding protein/chimera
Chain: A: PDB Molecule:fusion protein consists of immunoglobin g-
PDBTitle: solution structure of the rrm of srp20
21c2g4bA_



not modelled 99.8 23 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:splicing factor u2af 65 kda subunit;
PDBTitle: structure of u2af65 variant with polyuridine tract
22d1u6fa1



not modelled 99.8 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
23c3s8sA_



not modelled 99.8 20 PDB header:transcription
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd1a;
PDBTitle: crystal structure of the rrm domain of human setd1a
24c2kn4A_



not modelled 99.8 23 PDB header:rna binding protein
Chain: A: PDB Molecule:immunoglobulin g-binding protein g, splicing factor;
PDBTitle: the structure of the rrm domain of sc35
25c2ku7A_



not modelled 99.8 24 PDB header:transcription
Chain: A: PDB Molecule:mll1 phd3-cyp33 rrm chimeric protein;
PDBTitle: solution structure of mll1 phd3-cyp33 rrm chimeric protein
26d1h2tz_



not modelled 99.8 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
27d1n54b_



not modelled 99.8 21 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
28c2do0A_



not modelled 99.8 24 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m;
PDBTitle: solution structure of the rna binding domain of2 heterogeneous nuclear ribonucleoprotein m
29c2dnoA_



not modelled 99.8 22 PDB header:rna binding protein
Chain: A: PDB Molecule:trinucleotide repeat containing 4 variant;
PDBTitle: solution structure of rna binding domain in trinucleotide2 repeat containing 4 variant
30c2dgpA_



not modelled 99.8 34 PDB header:rna binding protein
Chain: A: PDB Molecule:bruno-like 4, rna binding protein;
PDBTitle: solution structure of the n-terminal rna binding domain in2 bruno-like 4 rna-binding protein
31d2cpza1



not modelled 99.8 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
32c3pgwS_



not modelled 99.8 26 PDB header:splicing/dna/rna
Chain: S: PDB Molecule:u1-70k;
PDBTitle: crystal structure of human u1 snrnp
33c2rneA_



not modelled 99.8 23 PDB header:rna binding protein
Chain: A: PDB Molecule:tia1 protein;
PDBTitle: solution structure of the second rna recognition motif2 (rrm) of tia-1
34c2dhgA_



not modelled 99.8 20 PDB header:rna binding protein
Chain: A: PDB Molecule:trna selenocysteine associated protein (secp43);
PDBTitle: solution structure of the c-terminal rna recognition motif2 in trna selenocysteine associated protein
35d1whxa_



not modelled 99.8 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
36c2jwnB_



not modelled 99.8 22 PDB header:rna binding protein
Chain: B: PDB Molecule:embryonic polyadenylate-binding protein 2-b;
PDBTitle: solution nmr structure of the protease-resistent domain of2 xenopus laevis epabp2
37d2cq0a1



not modelled 99.8 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
38d2f9da1



not modelled 99.8 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
39c2do4A_



not modelled 99.8 23 PDB header:immune system
Chain: A: PDB Molecule:squamous cell carcinoma antigen recognized by t-
PDBTitle: solution structure of the rna binding domain of squamous2 cell carcinoma antigen recognized by t cells 3
40d1x5ua1



not modelled 99.8 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
41d1rk8a_



not modelled 99.8 32 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
42c2e44A_



not modelled 99.8 20 PDB header:rna binding protein
Chain: A: PDB Molecule:insulin-like growth factor 2 mrna binding
PDBTitle: solution structure of rna binding domain in insulin-like2 growth factor 2 mrna binding protein 3
43d1fxla1



not modelled 99.8 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
44d2j0sd1



not modelled 99.8 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
45d1fnxh2



not modelled 99.8 25 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
46c2fy1A_



not modelled 99.8 26 PDB header:structural protein/rna
Chain: A: PDB Molecule:rna-binding motif protein, y chromosome, family
PDBTitle: a dual mode of rna recognition by the rbmy protein
47c3egnA_



not modelled 99.8 18 PDB header:splicing
Chain: A: PDB Molecule:rna-binding protein 40;
PDBTitle: c-terminal rna recognition motif of the u11/u12 65k protein
48d1fj7a_



not modelled 99.8 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
49c2dnmA_



not modelled 99.8 26 PDB header:rna binding protein
Chain: A: PDB Molecule:srp46 splicing factor;
PDBTitle: solution structure of rna binding domain in srp46 splicing2 factor
50d1b7fa1



not modelled 99.8 31 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
51d1fjeb1



not modelled 99.8 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
52d1x4ha1



not modelled 99.8 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
53c2dnzA_



not modelled 99.8 29 PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna-binding protein 23;
PDBTitle: solution structure of the second rna binding domain of rna2 binding motif protein 23
54c3bs9A_



not modelled 99.8 28 PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolysin tia-1 isoform p40;
PDBTitle: x-ray structure of human tia-1 rrm2
55c2kxnB_



not modelled 99.8 27 PDB header:rna binding protein/rna
Chain: B: PDB Molecule:transformer-2 protein homolog beta;
PDBTitle: nmr structure of human tra2beta1 rrm in complex with aagaac rna
56d1whwa_



not modelled 99.8 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
57c2dgsA_



not modelled 99.8 24 PDB header:rna binding protein
Chain: A: PDB Molecule:daz-associated protein 1;
PDBTitle: solution structure of the second rna binding domain in daz-2 associated protein 1
58c2rs2A_



not modelled 99.8 18 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:rna-binding protein musashi homolog 1;
PDBTitle: 1h, 13c, and 15n chemical shift assignments for musashi1 rbd1:r(guagu)2 complex
59d1h2vz_



not modelled 99.8 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
60d1x5oa1



not modelled 99.8 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
61c3ex7B_



not modelled 99.8 24 PDB header:hydrolase/rna binding protein/rna
Chain: B: PDB Molecule:rna-binding protein 8a;
PDBTitle: the crystal structure of ejc in its transition state
62d1cvja1



not modelled 99.7 28 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
63d2up1a2



not modelled 99.7 28 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
64c3nnhA_



not modelled 99.7 25 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:cugbp elav-like family member 1;
PDBTitle: crystal structure of the cugbp1 rrm1 with guuguuuuguuu rna
65d2disa1



not modelled 99.7 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
66c3cw18_



not modelled 99.7 29 PDB header:splicing
Chain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda;
PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop; PDBTitle: crystal structure of human spliceosomal u1 snrnp
67d2cpha1



not modelled 99.7 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
68d2adca1



not modelled 99.7 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
69d1l3ka1



not modelled 99.7 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
70d2cqga1



not modelled 99.7 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
71d2ghpa3



not modelled 99.7 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
72d1uawa_



not modelled 99.7 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
73c2e5hA_



not modelled 99.7 24 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:zinc finger cchc-type and rna-binding motif-
PDBTitle: solution structure of rna binding domain in zinc finger2 cchc-type and rna binding motif 1
74d1fnxh1



not modelled 99.7 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
75c2e5jA_



not modelled 99.7 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain
PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing
76d2cpxa1



not modelled 99.7 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
77d1x5sa1



not modelled 99.7 27 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
78c2divA_



not modelled 99.7 15 PDB header:rna binding protein
Chain: A: PDB Molecule:trna selenocysteine associated protein;
PDBTitle: solution structure of the rrm domain of trna selenocysteine2 associated protein
79d1x4ba1



not modelled 99.7 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
80c2x1aA_



not modelled 99.7 30 PDB header:transcription/rna
Chain: A: PDB Molecule:mrna 3'-end-processing protein rna15;
PDBTitle: structure of rna15 rrm with rna bound (g)
81d2cpea1



not modelled 99.7 23 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
82c2dgtA_



not modelled 99.7 30 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 30;
PDBTitle: solution structure of the second rna binding domain in rna-2 binding protein 30
83d1fxla2



not modelled 99.7 28 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
84d2cqda1



not modelled 99.7 30 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
85d1x4aa1



not modelled 99.7 26 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
86d2cq3a1



not modelled 99.7 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
87c2fc8A_



not modelled 99.7 22 PDB header:rna binding protein
Chain: A: PDB Molecule:ncl protein;
PDBTitle: solution structure of the rrm_1 domain of ncl protein
88d2cpda1



not modelled 99.7 69 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
89d1zh5a2



not modelled 99.7 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
90d1b7fa2



not modelled 99.7 29 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
91d1wi8a_



not modelled 99.7 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
92d1sxla_



not modelled 99.7 30 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
93c2d9pA_



not modelled 99.7 21 PDB header:rna binding protein
Chain: A: PDB Molecule:polyadenylate-binding protein 3;
PDBTitle: solution structure of rna binding domain 4 in2 polyadenylation binding protein 3
94c2la4A_



not modelled 99.7 26 PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: nmr structure of the c-terminal rrm domain of poly(u) binding 1
95c2dngA_



not modelled 99.7 18 PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4h;
PDBTitle: solution structure of rna binding domain in eukaryotic2 translation initiation factor 4h
96c2dh8A_



not modelled 99.7 16 PDB header:rna binding protein
Chain: A: PDB Molecule:daz-associated protein 1;
PDBTitle: solution structure of the n-terminal rna binding domain in2 daz-associated protein 1
97c3md1B_



not modelled 99.7 25 PDB header:rna binding protein
Chain: B: PDB Molecule:nuclear and cytoplasmic polyadenylated rna-binding protein
PDBTitle: crystal structure of the second rrm domain of yeast poly(u)-binding2 protein (pub1)
98d1l3ka2



not modelled 99.7 30 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
99d2cq4a1



not modelled 99.7 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
100c2ywkA_



not modelled 99.7 26 PDB header:rna binding protein
Chain: A: PDB Molecule:putative rna-binding protein 11;
PDBTitle: crystal structure of rrm-domain derived from human putative2 rna-binding protein 11
101d2cqca1



not modelled 99.7 29 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
102d2msta_



not modelled 99.7 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
103d2u2fa_



not modelled 99.7 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
104d1no8a_



not modelled 99.7 20 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
105c1no8A_



not modelled 99.7 20 PDB header:rna binding protein
Chain: A: PDB Molecule:aly;
PDBTitle: solution structure of the nuclear factor aly rbd domain
106d1wg4a_



not modelled 99.7 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
107d2cqba1



not modelled 99.7 25 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
108c2adbA_



not modelled 99.7 18 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:polypyrimidine tract-binding protein 1;
PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd2 complexed with cucucu rna
109c3b4mD_



not modelled 99.7 22 PDB header:rna binding protein
Chain: D: PDB Molecule:polyadenylate-binding protein 2;
PDBTitle: crystal structure of human pabpn1 rrm
110d2u1aa_



not modelled 99.7 18 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
111d1x4ga1



not modelled 99.7 22 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
112c3q2tC_



not modelled 99.7 18 PDB header:rna binding protein/rna
Chain: C: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6;
PDBTitle: crystal structure of cfim68 rrm/cfim25/rna complex
113c2dh9A_



not modelled 99.7 24 PDB header:rna binding protein
Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m;
PDBTitle: solution structure of the c-terminal rna binding domain in2 heterogeneous nuclear ribonucleoprotein m
114c2la6A_



not modelled 99.7 23 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein fus;
PDBTitle: solution nmr structure of rrm domain of rna-binding protein fus from2 homo sapiens, northeast structural genomics consortium target hr6430a
115c2dgxA_



not modelled 99.7 22 PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0430 protein;
PDBTitle: solution structure of the rna recognition motif in kiaa04302 protein
116d1hd0a_



not modelled 99.7 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
117d2b0ga1



not modelled 99.7 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
118c2dgwA_



not modelled 99.7 21 PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna-binding protein 19;
PDBTitle: solution structure of the second rna recognition motif in2 rna-binding protein 19
119d2cqpa1



not modelled 99.7 24 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
120c2dnnA_



not modelled 99.7 20 PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 12;
PDBTitle: solution structure of rna binding domain in rna-binding2 protein 12

Binding site prediction 

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