Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA0A5B9
DateSat Jun 16 10:18:22 BST 2012
Unique Job IDe3e6a88886e70bff

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1ogae2
Top template information
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
Confidence and coverage
Confidence:100.0% Coverage: 71%
126 residues ( 71% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  DLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQ
Secondary structure 






























SS confidence 



























































Disorder  ????????




??????????


























??????????
Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  PLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIV
Secondary structure 





























SS confidence 



























































Disorder  ????????












?


?????













????????????????
Disorder confidence 



























































 
   .........130.........140.........150.........160.........170........
Sequence  SAEAWGRADCGFTSESYQQGVLSATILYEILLGKATLYAVLVSALVLMAMVKRKDSRG
Secondary structure 













SS confidence 

























































Disorder  ???????????????????????


























????????
Disorder confidence 

























































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1oga chain E domain 2

3D model

Region: 4 - 129
Aligned: 126
Modelled: 126
Confidence: 100.0%
Identity: 99%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 2q86 chain B domain 2

3D model

Region: 1 - 128
Aligned: 124
Modelled: 124
Confidence: 100.0%
Identity: 75%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 2wbj chain H

3D model

Region: 1 - 127
Aligned: 127
Modelled: 127
Confidence: 100.0%
Identity: 99%
PDB header:immune system
Chain: H: PDB Molecule:ob tcr;
PDBTitle: tcr complex

Phyre2

PDB 3lqz chain A

3D model

Region: 1 - 112
Aligned: 101
Modelled: 100
Confidence: 99.9%
Identity: 25%
PDB header:immune system
Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dp alpha 1 chain;
PDBTitle: crystal structure of hla-dp2

Phyre2

PDB 1ieb chain D

3D model

Region: 2 - 110
Aligned: 98
Modelled: 104
Confidence: 99.9%
Identity: 22%
PDB header:histocompatibility antigen
Chain: D: PDB Molecule:mhc class ii i-ek;
PDBTitle: histocompatibility antigen

Phyre2

PDB 1seb chain B

3D model

Region: 2 - 114
Aligned: 102
Modelled: 101
Confidence: 99.9%
Identity: 22%
PDB header:complex (mhc ii/peptide/toxin)
Chain: B: PDB Molecule:hla class ii histocompatibility antigen;
PDBTitle: complex of the human mhc class ii glycoprotein hla-dr1 and2 the bacterial superantigen seb

Phyre2

PDB 2q6w chain D

3D model

Region: 2 - 111
Aligned: 99
Modelled: 105
Confidence: 99.9%
Identity: 27%
PDB header:immune system
Chain: D: PDB Molecule:hla class ii histocompatibility antigen, dr
PDBTitle: the structure of hla-dra, drb3*0101 (dr52a) with bound2 platelet integrin peptide associated with fetal and3 neonatal alloimmune thrombocytopenia

Phyre2

PDB 1s9v chain A

3D model

Region: 1 - 112
Aligned: 101
Modelled: 107
Confidence: 99.9%
Identity: 26%
PDB header:immune system
Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dq(3)
PDBTitle: crystal structure of hla-dq2 complexed with deamidated2 gliadin peptide

Phyre2

PDB 2bc4 chain C

3D model

Region: 2 - 120
Aligned: 107
Modelled: 116
Confidence: 99.9%
Identity: 18%
PDB header:immune system
Chain: C: PDB Molecule:hla class ii histocompatibility antigen, dm
PDBTitle: crystal structure of hla-dm

Phyre2

PDB 1ypz chain F domain 2

3D model

Region: 2 - 113
Aligned: 103
Modelled: 112
Confidence: 99.9%
Identity: 20%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 1hxm chain B domain 2

3D model

Region: 1 - 110
Aligned: 101
Modelled: 110
Confidence: 99.9%
Identity: 22%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: C1 set domains (antibody constant domain-like)

Phyre2

PDB 2p24 chain A

3D model

Region: 2 - 112
Aligned: 100
Modelled: 106
Confidence: 99.9%
Identity: 23%
PDB header:immune system
Chain: A: PDB Molecule:h-2 class ii histocompatibility antigen, a-u alpha chain;
PDBTitle: i-au/mbp125-135

Phyre2

PDB 1f3j chain D

3D model

Region: 2 - 113
Aligned: 101
Modelled: 100
Confidence: 99.9%
Identity: 23%
PDB header:immune system
Chain: D: PDB Molecule:h-2 class ii histocompatibility antigen;
PDBTitle: histocompatibility antigen i-ag7

Phyre2

PDB 3p73 chain A

3D model

Region: 2 - 113
Aligned: 98
Modelled: 107
Confidence: 99.9%
Identity: 26%
PDB header:immune system
Chain: A: PDB Molecule:mhc rfp-y class i alpha chain;
PDBTitle: crystal structures of the chicken yf1*7.1 molecule

Phyre2

PDB 1iao chain B

3D model

Region: 2 - 112
Aligned: 100
Modelled: 106
Confidence: 99.9%
Identity: 25%
PDB header:mhc ii
Chain: B: PDB Molecule:mhc class ii i-ad;
PDBTitle: class ii mhc i-ad in complex with ovalbumin peptide 323-339

Phyre2

PDB 1nan chain H

3D model

Region: 1 - 113
Aligned: 100
Modelled: 104
Confidence: 99.9%
Identity: 27%
PDB header:immune system
Chain: H: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: mch class i h-2kb molecule complexed with pbm1 peptide

Phyre2

PDB 1mhc chain A

3D model

Region: 2 - 112
Aligned: 98
Modelled: 102
Confidence: 99.9%
Identity: 24%
PDB header:histocompatibility antigen/peptide
Chain: A: PDB Molecule:mhc class i antigen h2-m3;
PDBTitle: model of mhc class i h2-m3 with nonapeptide from rat nd1 refined at2 2.3 angstroms resolution

Phyre2

PDB 1nan chain L

3D model

Region: 1 - 113
Aligned: 100
Modelled: 104
Confidence: 99.9%
Identity: 27%
PDB header:immune system
Chain: L: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: mch class i h-2kb molecule complexed with pbm1 peptide

Phyre2

PDB 1kj3 chain I

3D model

Region: 2 - 113
Aligned: 99
Modelled: 103
Confidence: 99.9%
Identity: 27%
PDB header:immune system
Chain: I: PDB Molecule:h-2kb mhc class i molecule alpha chain;
PDBTitle: mhc class i h-2kb molecule complexed with pkb1 peptide

Phyre2

PDB 1t0m chain D

3D model

Region: 2 - 113
Aligned: 99
Modelled: 103
Confidence: 99.9%
Identity: 27%
PDB header:immune system
Chain: D: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: conformational switch in polymorphic h-2k molecules2 containing an hsv peptide

Phyre2
1

d1ogae2
2

d2q86b2
3

c2wbjH_
4

c3lqzA_
5

c1iebD_
6

c1sebB_
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c2q6wD_
8

c1s9vA_
9

c2bc4C_
10

d1ypzf2
11

d1hxmb2
12

c2p24A_
13

c1f3jD_
14

c3p73A_
15

c1iaoB_
16

c1nanH_
17

c1mhcA_
18

c1nanL_
19

c1kj3I_
20

c1t0mD_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ogae2



100.0 99 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
2d2q86b2



100.0 75 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
3c2wbjH_



100.0 99 PDB header:immune system
Chain: H: PDB Molecule:ob tcr;
PDBTitle: tcr complex
4c3lqzA_



99.9 25 PDB header:immune system
Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dp alpha 1 chain;
PDBTitle: crystal structure of hla-dp2
5c1iebD_



99.9 22 PDB header:histocompatibility antigen
Chain: D: PDB Molecule:mhc class ii i-ek;
PDBTitle: histocompatibility antigen
6c1sebB_



99.9 22 PDB header:complex (mhc ii/peptide/toxin)
Chain: B: PDB Molecule:hla class ii histocompatibility antigen;
PDBTitle: complex of the human mhc class ii glycoprotein hla-dr1 and2 the bacterial superantigen seb
7c2q6wD_



99.9 27 PDB header:immune system
Chain: D: PDB Molecule:hla class ii histocompatibility antigen, dr
PDBTitle: the structure of hla-dra, drb3*0101 (dr52a) with bound2 platelet integrin peptide associated with fetal and3 neonatal alloimmune thrombocytopenia
8c1s9vA_



99.9 26 PDB header:immune system
Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dq(3)
PDBTitle: crystal structure of hla-dq2 complexed with deamidated2 gliadin peptide
9c2bc4C_



99.9 18 PDB header:immune system
Chain: C: PDB Molecule:hla class ii histocompatibility antigen, dm
PDBTitle: crystal structure of hla-dm
10d1ypzf2



99.9 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
11d1hxmb2



99.9 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
12c2p24A_



99.9 23 PDB header:immune system
Chain: A: PDB Molecule:h-2 class ii histocompatibility antigen, a-u alpha chain;
PDBTitle: i-au/mbp125-135
13c1f3jD_



99.9 23 PDB header:immune system
Chain: D: PDB Molecule:h-2 class ii histocompatibility antigen;
PDBTitle: histocompatibility antigen i-ag7
14c3p73A_



99.9 26 PDB header:immune system
Chain: A: PDB Molecule:mhc rfp-y class i alpha chain;
PDBTitle: crystal structures of the chicken yf1*7.1 molecule
15c1iaoB_



99.9 25 PDB header:mhc ii
Chain: B: PDB Molecule:mhc class ii i-ad;
PDBTitle: class ii mhc i-ad in complex with ovalbumin peptide 323-339
16c1nanH_



99.9 27 PDB header:immune system
Chain: H: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: mch class i h-2kb molecule complexed with pbm1 peptide
17c1mhcA_



99.9 24 PDB header:histocompatibility antigen/peptide
Chain: A: PDB Molecule:mhc class i antigen h2-m3;
PDBTitle: model of mhc class i h2-m3 with nonapeptide from rat nd1 refined at2 2.3 angstroms resolution
18c1nanL_



99.9 27 PDB header:immune system
Chain: L: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: mch class i h-2kb molecule complexed with pbm1 peptide
19c1kj3I_



99.9 27 PDB header:immune system
Chain: I: PDB Molecule:h-2kb mhc class i molecule alpha chain;
PDBTitle: mhc class i h-2kb molecule complexed with pkb1 peptide
20c1t0mD_



99.9 27 PDB header:immune system
Chain: D: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: conformational switch in polymorphic h-2k molecules2 containing an hsv peptide
21c1t0mA_



not modelled 99.9 27 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: conformational switch in polymorphic h-2k molecules2 containing an hsv peptide
22c2zsvC_



not modelled 99.9 27 PDB header:immune system
Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of h-2kb in complex with jhmv epitope s598
23c2clvA_



not modelled 99.9 27 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: mhc class i natural mutant h-2kbm8 heavy chain complexed2 with beta-2 microglobulin and pbm8 peptide
24c1kj3H_



not modelled 99.9 27 PDB header:immune system
Chain: H: PDB Molecule:h-2kb mhc class i molecule alpha chain;
PDBTitle: mhc class i h-2kb molecule complexed with pkb1 peptide
25d1kcvl2



not modelled 99.9 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
26d1kfal2



not modelled 99.9 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
27c1d9kD_



not modelled 99.9 23 PDB header:immune system
Chain: D: PDB Molecule:mhc i-ak b chain (beta chain);
PDBTitle: crystal structure of complex between d10 tcr and pmhc i-ak/ca
28d1ow0a2



not modelled 99.9 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
29c2zsvA_



not modelled 99.9 27 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of h-2kb in complex with jhmv epitope s598
30c1i7rA_



not modelled 99.9 24 PDB header:immune system
Chain: A: PDB Molecule:hla class i histocompatibility antigen, a-2
PDBTitle: crystal structure of class i mhc a2 in complex with peptide2 p1058
31c1zt7C_



not modelled 99.9 28 PDB header:immune system
Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-k
PDBTitle: crystal structure of class i mhc h-2kk in complex with a2 nonapeptide
32d1s9va1



not modelled 99.9 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
33d1igtb4



not modelled 99.9 34 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
34c1kj2I_



not modelled 99.9 27 PDB header:immune system
Chain: I: PDB Molecule:allogeneic h-2kb mhc class i molecule;
PDBTitle: murine alloreactive scfv tcr-peptide-mhc class i molecule complex
35c1n59C_



not modelled 99.9 28 PDB header:immune system
Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of the murine class i major histocompatibility2 complex of h-2kb, b2-microglobulin, and a 9-residue immunodominant3 peptide epitope gp33 derived from lcmv
36c2zswE_



not modelled 99.9 27 PDB header:immune system
Chain: E: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598
37c1p4lA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:mhc class i h-2kb heavy chain;
PDBTitle: crystal structure of nk receptor ly49c mutant with its mhc2 class i ligand h-2kb
38c1k8iB_



not modelled 99.9 26 PDB header:immune system
Chain: B: PDB Molecule:mhc class ii h2-m beta 2 chain;
PDBTitle: crystal structure of mouse h2-dm
39c2yf6A_



not modelled 99.9 22 PDB header:immune system
Chain: A: PDB Molecule:major histocompatibility complex class i glycoprotein
PDBTitle: complex of a b21 chicken mhc class i molecule and a 10mer2 chicken peptide
40d1c5cl2



not modelled 99.9 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
41c1n59A_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of the murine class i major histocompatibility2 complex of h-2kb, b2-microglobulin, and a 9-residue immunodominant3 peptide epitope gp33 derived from lcmv
42c1kj2H_



not modelled 99.9 28 PDB header:immune system
Chain: H: PDB Molecule:allogeneic h-2kb mhc class i molecule;
PDBTitle: murine alloreactive scfv tcr-peptide-mhc class i molecule complex
43c1p1zA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: x-ray crystal structure of the lectin-like natural killer2 cell receptor ly-49c bound to its mhc class i ligand h-2kb
44c1s7sA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structures of the murine class i major histocompatibility2 complex h-2kb in complex with lcmv-derived gp33 index peptide and3 three of its escape variants
45d2arja2



not modelled 99.9 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
46c2xpgB_



not modelled 99.9 22 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of a mhc class i-peptide complex
47c1kjmA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:rt1 class i histocompatibility antigen, aa alpha chain,
PDBTitle: tap-a-associated rat mhc class i molecule
48c1zhbJ_



not modelled 99.9 28 PDB header:immune system
Chain: J: PDB Molecule:h-2 class i histocompatibility antigen, d-b
PDBTitle: crystal structure of the murine class i major2 histocompatibility complex of h-2db, b2-microglobulin, and3 a 9-residue peptide derived from rat dopamine beta-4 monooxigenase
49c1fzkA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: mhc class i natural mutant h-2kbm1 heavy chain complexed with beta-22 microglobulin and sendai virus nucleoprotein
50d1igtb3



not modelled 99.9 24 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
51d1uwel2



not modelled 99.9 28 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
52c2zswA_



not modelled 99.9 27 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598
53c2zswC_



not modelled 99.9 27 PDB header:immune system
Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598
54c2zswG_



not modelled 99.9 27 PDB header:immune system
Chain: G: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598
55c1gzpA_



not modelled 99.9 20 PDB header:glycoprotein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd1b;
PDBTitle: cd1b in complex with gm2 ganglioside
56c1t7wA_



not modelled 99.9 25 PDB header:lipid binding protein
Chain: A: PDB Molecule:zinc-alpha-2-glycoprotein;
PDBTitle: zn-alpha-2-glycoprotein; cho-zag peg 400
57d1kjvb_



not modelled 99.9 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
58c3lqzB_



not modelled 99.9 25 PDB header:immune system
Chain: B: PDB Molecule:hla-dp2 beta chain linked with dra peptide;
PDBTitle: crystal structure of hla-dp2
59c3fonA_



not modelled 99.9 30 PDB header:immune system
Chain: A: PDB Molecule:mhc;
PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide vndifeai
60c1fzjA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: mhc class i natural mutant h-2kbm1 heavy chain complexed with beta-22 microglobulin and vesicular stomatitis virus nucleoprotein
61c3rgvC_



not modelled 99.9 28 PDB header:immune system
Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: a single tcr bound to mhci and mhc ii reveals switchable tcr2 conformers
62c1lekA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of h-2kbm3 bound to dev8
63c3c8kA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: the crystal structure of ly49c bound to h-2kb
64d2hmic2



not modelled 99.9 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
65c1ypzA_



not modelled 99.9 27 PDB header:immune system
Chain: A: PDB Molecule:h2-t22 protein;
PDBTitle: immune receptor
66c1je6A_



not modelled 99.9 21 PDB header:immune system
Chain: A: PDB Molecule:mhc class i chain-related protein;
PDBTitle: structure of the mhc class i homolog micb
67c1fo0H_



not modelled 99.9 28 PDB header:immune system
Chain: H: PDB Molecule:protein (allogeneic h-2kb mhc class i molecule);
PDBTitle: murine alloreactive scfv tcr-peptide-mhc class i molecule2 complex
68c3dj9A_



not modelled 99.9 26 PDB header:immune system
Chain: A: PDB Molecule:ig gamma-1 chain c region;
PDBTitle: crytal structure of an isolated, unglycosylated antibody2 ch2 domain
69c1wbzC_



not modelled 99.9 28 PDB header:immune system
Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: crystal structures of murine mhc class i h-2 db and kb2 molecules in complex with ctl epitopes from influenza a3 virus: implications for tcr repertoire selection and4 immunodominance
70d1pg7x2



not modelled 99.9 24 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
71c3qukE_



not modelled 99.9 21 PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major histocompatibility2 complex h-2db in complex with lcmv-derived gp33 altered peptide3 ligand (y4a)
72d1i1ca1



not modelled 99.9 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
73c1bqhD_



not modelled 99.9 28 PDB header:immune system
Chain: D: PDB Molecule:protein (h-2 class i histocompatibility antigen);
PDBTitle: murine cd8aa ectodomain fragment in complex with h-2kb/vsv8
74c3cvhM_



not modelled 99.9 28 PDB header:immune system
Chain: M: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: how tcr-like antibody recognizes mhc-bound peptide
75c1cd1B_



not modelled 99.9 21 PDB header:cd1
Chain: B: PDB Molecule:cd1;
PDBTitle: cd1(mouse) antigen presenting molecule
76c3cvhA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: how tcr-like antibody recognizes mhc-bound peptide
77c3cvhN_



not modelled 99.9 21 PDB header:immune system
Chain: N: PDB Molecule:beta-2-microglobulin;
PDBTitle: how tcr-like antibody recognizes mhc-bound peptide
78c1fg2K_



not modelled 99.9 21 PDB header:immune system
Chain: K: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of the lcmv peptidic epitope gp33 in2 complex with the murine class i mhc molecule h-2db
79c1fg2H_



not modelled 99.9 21 PDB header:immune system
Chain: H: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of the lcmv peptidic epitope gp33 in2 complex with the murine class i mhc molecule h-2db
80c1legA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of h-2kb bound to the dev8 peptide
81c1n5aE_



not modelled 99.9 21 PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the murine class i major histocompatibility2 complex of h-2db, b2-microglobulin, and a 9-residue immunodominant3 peptide epitope gp33 derived from lcmv
82c1n5aH_



not modelled 99.9 21 PDB header:immune system
Chain: H: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the murine class i major histocompatibility2 complex of h-2db, b2-microglobulin, and a 9-residue immunodominant3 peptide epitope gp33 derived from lcmv
83c1fg2B_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of the lcmv peptidic epitope gp33 in2 complex with the murine class i mhc molecule h-2db
84c1mhcB_



not modelled 99.9 21 PDB header:histocompatibility antigen/peptide
Chain: B: PDB Molecule:mhc class i antigen h2-m3;
PDBTitle: model of mhc class i h2-m3 with nonapeptide from rat nd1 refined at2 2.3 angstroms resolution
85c1fg2E_



not modelled 99.9 21 PDB header:immune system
Chain: E: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of the lcmv peptidic epitope gp33 in2 complex with the murine class i mhc molecule h-2db
86c3gblA_



not modelled 99.9 19 PDB header:immune system
Chain: A: PDB Molecule:beta2-microglobulin;
PDBTitle: crystal structure of grass carp beta2-microglobulin
87c1de4A_



not modelled 99.9 25 PDB header:metal transport inhibitor/receptor
Chain: A: PDB Molecule:hemochromatosis protein;
PDBTitle: hemochromatosis protein hfe complexed with transferrin receptor
88c1mhcE_



not modelled 99.9 21 PDB header:histocompatibility antigen/peptide
Chain: E: PDB Molecule:mhc class i antigen h2-m3;
PDBTitle: model of mhc class i h2-m3 with nonapeptide from rat nd1 refined at2 2.3 angstroms resolution
89c2fwoA_



not modelled 99.9 27 PDB header:immune system/viral protein
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-d
PDBTitle: mhc class i h-2kd heavy chain in complex with beta-2 2microglobulin and peptide derived from influenza3 nucleoprotein
90c3ubxB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the mouse cd1d-c20:2-agalcer-l363 mab fab complex
91c1s7vB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major2 histocompatibility complex h-2db in complex with lcmv-3 derived gp33 index peptide and three of its escape variants
92d1uvqa1



not modelled 99.9 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
93c3e6hB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: mhc class i h-2dd heavy chain complexed with beta-22 microglobulin and a variant peptide, pi10, from the human3 immunodeficiency virus (bal) envelope glycoprotein 120
94c1nezB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: the crystal structure of a tl/cd8aa complex at 2.1a2 resolution:implications for memory t cell generation, co-receptor3 preference and affinity
95d1adqa1



not modelled 99.9 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
96c1n59B_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the murine class i major histocompatibility2 complex of h-2kb, b2-microglobulin, and a 9-residue immunodominant3 peptide epitope gp33 derived from lcmv
97c1n59D_



not modelled 99.9 21 PDB header:immune system
Chain: D: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the murine class i major histocompatibility2 complex of h-2kb, b2-microglobulin, and a 9-residue immunodominant3 peptide epitope gp33 derived from lcmv
98d1mjul2



not modelled 99.9 24 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
99c1rk1A_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: mhc class i natural h-2kb heavy chain complexed with beta-22 microglobulin and herpes simplex virus mutant glycoprotein b peptide
100c1rk0A_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b
PDBTitle: mhc class i h-2kb heavy chain complexed with beta-22 microglobulin and herpes simplex virus glycoprotein b3 peptide
101c3arfB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: ternary crystal structure of the mouse nkt tcr-cd1d-c20:2
102c3cc5B_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: h-2db complex with human gp100
103c1g7pA_



not modelled 99.9 28 PDB header:immune system
Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: crystal structure of mhc class i h-2kb heavy chain complexed with2 beta-2 microglobulin and yeast alpha-glucosidase
104c1zhbB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the murine class i major2 histocompatibility complex of h-2db, b2-microglobulin, and3 a 9-residue peptide derived from rat dopamine beta-4 monooxigenase
105c1zhbK_



not modelled 99.9 21 PDB header:immune system
Chain: K: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the murine class i major2 histocompatibility complex of h-2db, b2-microglobulin, and3 a 9-residue peptide derived from rat dopamine beta-4 monooxigenase
106c1s7xK_



not modelled 99.9 21 PDB header:immune system
Chain: K: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major2 histocompatibility complex h-2db in complex with lcmv-3 derived gp33 index peptide and three of its escape variants
107c1s7wK_



not modelled 99.9 21 PDB header:immune system
Chain: K: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major histocompatibility2 complex h-2db in complex with lcmv-derived gp33 index peptide and3 three of its escape variants
108c1s7wE_



not modelled 99.9 21 PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major histocompatibility2 complex h-2db in complex with lcmv-derived gp33 index peptide and3 three of its escape variants
109c1s7vE_



not modelled 99.9 21 PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major2 histocompatibility complex h-2db in complex with lcmv-3 derived gp33 index peptide and three of its escape variants
110c3cvhB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: how tcr-like antibody recognizes mhc-bound peptide
111c1t0nE_



not modelled 99.9 21 PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: conformational switch in polymorphic h-2k molecules2 containing an hsv peptide
112c2clzP_



not modelled 99.9 21 PDB header:immune system
Chain: P: PDB Molecule:beta-2 microglobulin;
PDBTitle: mhc class i natural mutant h-2kbm8 heavy chain complexed2 with beta-2 microglobulin and pbm1 peptide
113c2fwoB_



not modelled 99.9 21 PDB header:immune system/viral protein
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: mhc class i h-2kd heavy chain in complex with beta-2 2microglobulin and peptide derived from influenza3 nucleoprotein
114c3pwuB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: an immmunodominant ctl epitope from rinderpest virus presented by2 cattle mhc class i molecule n*01801(bola-a11)
115c1inqB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of minor histocompatibility antigen peptide, h13a,2 complexed to h2-db
116c1wbxB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2microglobulin;
PDBTitle: crystal structures of murine mhc class i h-2 db and kb2 molecules in complex with ctl epitopes from influenza a3 virus: implications for tcr repertoire selection and4 immunodominance
117c2clvP_



not modelled 99.9 21 PDB header:immune system
Chain: P: PDB Molecule:beta-2 microglobulin;
PDBTitle: mhc class i natural mutant h-2kbm8 heavy chain complexed2 with beta-2 microglobulin and pbm8 peptide
118c1kj3L_



not modelled 99.9 21 PDB header:immune system
Chain: L: PDB Molecule:beta-2 microglobulin;
PDBTitle: mhc class i h-2kb molecule complexed with pkb1 peptide
119c3qulK_



not modelled 99.9 21 PDB header:immune system
Chain: K: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major histocompatibility2 complex h-2db in complex with lcmv-derived gp33 altered peptide3 ligand (y4s)
120c1wbzB_



not modelled 99.9 21 PDB header:immune system
Chain: B: PDB Molecule:beta-2microglobulin;
PDBTitle: crystal structures of murine mhc class i h-2 db and kb2 molecules in complex with ctl epitopes from influenza a3 virus: implications for tcr repertoire selection and4 immunodominance

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