Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionC1P605
DateWed Jan 25 15:20:05 GMT 2012
Unique Job ID3a1a217ed98d356d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2jucA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:pre-mrna-splicing factor urn1;
PDBTitle: urn1 ff domain yeast
Confidence and coverage
Confidence: 10.6% Coverage: 29%
8 residues ( 29% of your sequence) have been modelled with 10.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20........
Sequence  MKLRKILKSMFNNYCKTFKDVPPGNMFR
Secondary structure 






SS confidence 



























Disorder  ??


















???????
Disorder confidence 



























 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2juc chain A

3D model

Region: 8 - 15
Aligned: 8
Modelled: 8
Confidence: 10.6%
Identity: 38%
PDB header:unknown function
Chain: A: PDB Molecule:pre-mrna-splicing factor urn1;
PDBTitle: urn1 ff domain yeast

Phyre2

PDB 1rqp chain A domain 1

3D model

Region: 14 - 27
Aligned: 14
Modelled: 14
Confidence: 10.1%
Identity: 36%
Fold: Bacterial fluorinating enzyme, C-terminal domain
Superfamily: Bacterial fluorinating enzyme, C-terminal domain
Family: Bacterial fluorinating enzyme, C-terminal domain

Phyre2

PDB 2q6o chain B

3D model

Region: 14 - 27
Aligned: 14
Modelled: 14
Confidence: 7.5%
Identity: 43%
PDB header:biosynthetic protein
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: sall-y70t with sam and cl

Phyre2

PDB 2dod chain A domain 1

3D model

Region: 8 - 17
Aligned: 10
Modelled: 10
Confidence: 7.5%
Identity: 50%
Fold: Another 3-helical bundle
Superfamily: FF domain
Family: FF domain

Phyre2

PDB 1wu8 chain B

3D model

Region: 14 - 27
Aligned: 14
Modelled: 14
Confidence: 6.5%
Identity: 29%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ph0463;
PDBTitle: crystal structure of project ph0463 from pyrococcus horikoshii ot3

Phyre2

PDB 2zbv chain C

3D model

Region: 14 - 27
Aligned: 14
Modelled: 14
Confidence: 6.4%
Identity: 36%
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of uncharacterized conserved protein from thermotoga2 maritima

Phyre2

PDB 2w2d chain D

3D model

Region: 5 - 16
Aligned: 12
Modelled: 12
Confidence: 5.9%
Identity: 42%
PDB header:hydrolase
Chain: D: PDB Molecule:botulinum neurotoxin a heavy chain;
PDBTitle: crystal structure of a catalytically active, non-toxic2 endopeptidase derivative of clostridium botulinum toxin a

Phyre2

PDB 3pyw chain A

3D model

Region: 16 - 25
Aligned: 10
Modelled: 10
Confidence: 5.8%
Identity: 60%
PDB header:structural protein
Chain: A: PDB Molecule:s-layer protein sap;
PDBTitle: the structure of the slh domain from b. anthracis surface array2 protein at 1.8a

Phyre2

PDB 2odm chain A

3D model

Region: 1 - 27
Aligned: 27
Modelled: 25
Confidence: 5.6%
Identity: 19%
PDB header:unknown function
Chain: A: PDB Molecule:upf0358 protein mw0995;
PDBTitle: crystal structure of s. aureus ylan, an essential leucine rich protein2 involved in the control of cell shape

Phyre2

PDB 1nov chain E

3D model

Region: 2 - 12
Aligned: 11
Modelled: 11
Confidence: 5.2%
Identity: 55%
PDB header:virus
Chain: E: PDB Molecule:nodamura virus coat proteins;
PDBTitle: nodamura virus

Phyre2
1

c2jucA_
2

d1rqpa1
3

c2q6oB_
4

d2doda1
5

c1wu8B_
6

c2zbvC_
7

c2w2dD_
8

c3pywA_
9

c2odmA_
10

c1novE_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2jucA_



10.6 38 PDB header:unknown function
Chain: A: PDB Molecule:pre-mrna-splicing factor urn1;
PDBTitle: urn1 ff domain yeast
2d1rqpa1



10.1 36 Fold:Bacterial fluorinating enzyme, C-terminal domain
Superfamily:Bacterial fluorinating enzyme, C-terminal domain
Family:Bacterial fluorinating enzyme, C-terminal domain
3c2q6oB_



7.5 43 PDB header:biosynthetic protein
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: sall-y70t with sam and cl
4d2doda1



7.5 50 Fold:Another 3-helical bundle
Superfamily:FF domain
Family:FF domain
5c1wu8B_



6.5 29 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ph0463;
PDBTitle: crystal structure of project ph0463 from pyrococcus horikoshii ot3
6c2zbvC_



6.4 36 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of uncharacterized conserved protein from thermotoga2 maritima
7c2w2dD_



5.9 42 PDB header:hydrolase
Chain: D: PDB Molecule:botulinum neurotoxin a heavy chain;
PDBTitle: crystal structure of a catalytically active, non-toxic2 endopeptidase derivative of clostridium botulinum toxin a
8c3pywA_



5.8 60 PDB header:structural protein
Chain: A: PDB Molecule:s-layer protein sap;
PDBTitle: the structure of the slh domain from b. anthracis surface array2 protein at 1.8a
9c2odmA_



5.6 19 PDB header:unknown function
Chain: A: PDB Molecule:upf0358 protein mw0995;
PDBTitle: crystal structure of s. aureus ylan, an essential leucine rich protein2 involved in the control of cell shape
10c1novE_



5.2 55 PDB header:virus
Chain: E: PDB Molecule:nodamura virus coat proteins;
PDBTitle: nodamura virus

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0