Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionC1P600
DateWed Jan 25 15:20:04 GMT 2012
Unique Job ID950d94a121439c65

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1c8m4_
Top template information
PDB header:virus
Chain: 4: PDB Molecule:human rhinovirus 16 coat protein;
PDBTitle: refined crystal structure of human rhinovirus 16 complexed2 with vp63843 (pleconaril), an anti-picornaviral drug3 currently in clinical trials
Confidence and coverage
Confidence: 3.1% Coverage: 24%
5 residues ( 24% of your sequence) have been modelled with 3.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.
Sequence  MKYINCVYNINYKLKPHSHYK
Secondary structure 







SS confidence 




















Disorder  ???











??????
Disorder confidence 




















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region
No hits with confidence > 5%



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
No hits with confidence > 5%

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0