Secondary structure and disorder prediction |   |
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Sequence |   |
M | S | T | D | L | K | F | S | L | V | T | T | I | I | V | L | G | L | I | V | A | V | G | L | T | A | A | L | H |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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Confidence Key |
High(9) |   |
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Low (0) |
? | Disordered |
| Alpha helix |
| Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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1 |
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PDB 3nfi chain B
Region: 1 - 20 Aligned: 20 Modelled: 20 Confidence: 18.7% Identity: 5% PDB header:dna binding protein, transcription Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa49;
PDBTitle: crystal structure of tandem winged helix domain of rna polymerase i2 subunit a49
Phyre2
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PDB 2l27 chain B
Region: 1 - 16 Aligned: 16 Modelled: 16 Confidence: 10.8% Identity: 31% PDB header:membrane protein, peptide binding protei Chain: B: PDB Molecule:peptide agonist;
PDBTitle: nmr structure of the ecd1 of crf-r1 in complex with a peptide agonist
Phyre2
3 |
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PDB 1q90 chain G
Region: 14 - 19 Aligned: 6 Modelled: 6 Confidence: 8.4% Identity: 83% PDB header:photosynthesis Chain: G: PDB Molecule:cytochrome b6f complex subunit petg;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
Phyre2
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PDB 1q90 chain G
Region: 14 - 19 Aligned: 6 Modelled: 6 Confidence: 8.4% Identity: 83% Fold: Single transmembrane helix Superfamily: PetG subunit of the cytochrome b6f complex Family: PetG subunit of the cytochrome b6f complex
Phyre2
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Detailed template information |   |
Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Transmembrane helix prediction |   |
Transmembrane helices have been predicted in your sequence to adopt the topology shown below
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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If you use the binding site
predictions from 3DLigandSite, please also cite: |
3DLigandSite: predicting ligand-binding sites using similar structures. |
Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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