Return to main results Retrieve Phyre Job Id

Job DescriptionQ95XA9
Confidence100.00%DateSun Jun 30 11:04:27 BST 2013
Rank1Aligned Residues293
% Identity17%Templatec3bxjB_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:ras gtpase-activating protein syngap; PDBTitle: crystal structure of the c2-gap fragment of syngap
Resolution3.00 Å
Model Dimensions (Å)X:69.174 Y:65.262 Z:43.601

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   623......630.........640.........650.........660.........670.........680..
Predicted Secondary structure 













Query SS confidence 



























































Query Sequence  QADSTGFVFRAQRNRCPVLPLDRYKPLLDMIRECPSSILSWPSQVLPSHLKQFMYTCISH
Query Conservation      
    


     


 





 


      
 







 


  


 


Alig confidence 



























































Template Conservation      
 



       


   
  
  

      
   
           

  

 
Template Sequence  NNHFTEQRLKARYQTMSILPMELYKEFAEYVTNHYRMLCAVLEPALNVKGKEEVASALVH
Template Known Secondary structure 








TTTS
TT
Template Predicted Secondary structure 
















Template SS confidence 



























































   300.........310.........320.........330.........340.........350.........
 
   683......690.........700.... .....710.........720.........730........
Predicted Secondary structure 


.


...
Query SS confidence 





















.

































. . .
Query Sequence  LYALNPQFMSQVIRRIINDILV. TSTAEDVFRKDSLATGIITQCLRHLFKTPFDEFL. . .
Query Conservation 

    

  

  
  



 .  

 

















 



 
 
 
...
Alig confidence 





















.

































...
Template Conservation 

        

  
   

         





  

    
 
  
  

   
   
Template Sequence  ILQSTGKAKDFLSDMAMSEVDRFMEREHLIFRENTLATKAIEEYMRLIGQKYLKDAIGEF
Template Known Secondary structure  TT
TTT
TT
GGGGG
SSS
Template Predicted Secondary structure 





Template SS confidence 



























































   439440.........450.........460.........470.........480.........490........
 
   739740.........750........ .760.........770.........780.........
Predicted Secondary structure  .









........

Query SS confidence  .



















. . . . . . . .






























Query Sequence  . LENAQFSQSLKQQNLDSGGG. . . . . . . . AVELLVNFVDQRLLTIPLATRLLTIAAECAG
Query Conservation  . 
  
 
 
 
  
 

 

........
 


   



  

   
  

 
  


Alig confidence  .



















........






























Template Conservation 
  
       



 

    
  
   
          
  
    
  

 
   
 
Template Sequence  IRALYESEENCEVDPIKCTASSLAEHQANLRMCCELALCKVVNSHCVFPRELKEVFASWR
Template Known Secondary structure  S






GGG

TTTTSS
Template Predicted Secondary structure 










Template SS confidence 



























































   499500.........510.........520.........530.........540.........550........
 
   790.........800.........810.........820.........830 .......
Predicted Secondary structure 









............
Query SS confidence 








































. . . . . . . . . . . .






Query Sequence  CRFGDEQHEQHLIKRTLSALLILRVLNPIIFSTLNTGIGSQ. . . . . . . . . . . . IAKLVQI
Query Conservation      

  
  
  


















  


 
 ............


 


Alig confidence 









.





























............






Template Conservation    
  


  .     

 






 


 

  
 
    
     
 
 






 
Template Sequence  LRCAERGRED. IADRLISASLFLRFLCPAIMSPSLFGLMQEYPDEQTSRTLTLIAKVIQN
Template Known Secondary structure  TTT
.TTTSSS
GGGTTS
SS


Template Predicted Secondary structure 

.












Template SS confidence 



























































   559560........ .570.........580.........590.........600.........610.......
 
   838.840.........850.........860.........870.........880.........890.......
Predicted Secondary structure 




























Query SS confidence 



























































Query Sequence  SANSAASQTPTDSLTPAASTIRRMFDRIIFLVNQQQPAESPEDSEIGEVHTEWISCLTYM
Query Conservation 










  







  





 



    
 
 
 
      
    
 

Alig confidence 












































..












Template Conservation 


   
  

  
  

 

         

  

 
       ..    
   

  
Template Sequence  LANFSKFTSKEDFLGFMNEFLELEWGSMQQFLYEISNLDTLTNSS. . EGYIDLGRELSTL
Template Known Secondary structure  TT



SSSGGGGGGTTTS
S
SS


..




Template Predicted Secondary structure 


















..





Template SS confidence 



























































   618.620.........630.........640.........650.........660.. .......670.....
 
   898.900.... .....910.........920
Predicted Secondary structure 



....
Query SS confidence 






. . . .















Query Sequence  IGHSLTI. . . . RSATSSEDVHLPLPVL
Query Conservation 
 


 
....   
   
   
    
Alig confidence  ..




....















Template Conservation  ..
 

      
     
 
  
  
Template Sequence  . . HALLWEVLPQLSKEALLKLGPLPRL
Template Known Secondary structure  ..GGGS
TTT
Template Predicted Secondary structure  ..







Template SS confidence 


























   678.680.........690.........700..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D