 |
Job Description | Q95XA9 | Confidence | 99.16% | Date | Sun Jun 30 11:04:27 BST 2013 |
Rank | 114 | Aligned Residues | 93 |
% Identity | 19% | Template | c3a8qB_ |
PDB info |
PDB header:signaling protein | Chain: B: PDB Molecule:t-lymphoma invasion and metastasis-inducing |
PDBTitle: low-resolution crystal structure of the tiam2 phccex domain
|
Resolution | 3.20 Å |
|
 |
  |   |
391 | . | . | . | . | . | . | . | . | 400 | |
|
|
|
|
. | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |
| . | . | . | . | . |
|
|
| . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | V | A | A | T | V | A | L | R | K | . |
. |
. |
. |
. |
S | R | E | . |
. |
. |
. |
. |
. |
. |
E | K | Q | W | K | E | C | W | L | T | L | S | D | I | P | G | G | S | S | Q | L | S | V | F | D | S | M | G | S | K | L | R | Q | Q | V |
Query Conservation |   |
  |
|
|   |
|   |   |
|   |
| . | . | . | . | . |   |   |   | . | . | . | . | . | . | . |   |
|   |
|
|   |   |   |
|   |
|   |   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |   |
|
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|   |
|
|   |   |   | . | . | . | . | . |   |
|   |
|
|
|   |   |   |   | . |
|   |   |   |
|
Template Sequence |   |
V | R | K | A | G | W | L | F | F | K | P | L | V | T | L | Q | K | E | R | K | L | E | L | V | A | R | R | K | W | K | Q | Y | W | V | T | L | K | G | C | . |
. |
. |
. |
. |
T | L | L | F | Y | E | T | Y | S | A | . |
P | R | C | A | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
| B |  |  |  | T | T | T |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  | T | T | . | . | . | . | . |  |  |  |  |  | S |
|
|
|
| . |
| S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
| . | . | . | . | . |  |  |  |  |  |  |
|
|
|
| . |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
505 | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 550 | . | . | . | |
. | . | . | . | . |
  |
  |   |
439 | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | L | S | T | C | T | L | F | W | L | D | E | S | V | F | C | A | D | G | C | L | F | L | S | P | S | F | P | Q | Q | Q | P | P | T | L | Y | L | C | F | R | P | Y | T | A | F | L | K | W | I | R | I | L | R | S | R | T |
Query Conservation |   |
|
|
|   |
|   |
|
|   |   |   |
|
|   |
|   |
|   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |   |
|
|   |
|
|   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |
|   |   |   |   |   |   |   | . |
|
|   |   |   |
|   |
|   |
|   |   |   | . | . | . | . |   |   |
|   |
|
|
|   |
|   |   |
|   |   |   |
|
|   |
|
|   |   |
|   |
Template Sequence |   |
F | A | E | D | S | I | V | Q | S | V | P | E | H | P | . |
K | K | E | H | V | F | C | L | S | N | S | C | G | . |
. |
. |
. |
D | V | Y | L | F | Q | A | T | S | Q | T | D | L | E | N | W | V | T | A | I | H | S | A | C |
Template Known Secondary structure |   |
 |
| T | T |
|  |  |  |  |
| T | T |
| S | . | S |
| S | S |  |  |  |  |  |  | T | T | T | . | . | . | . |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |
|
|
|
|
| . |
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
567 | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | |
. | . | . | . | . | . | . | . | . | 590 | . | . | . | |
|
|
|
. | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|