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Job DescriptionQ95XA9
Confidence99.84%DateSun Jun 30 11:04:27 BST 2013
Rank28Aligned Residues167
% Identity17%Templatec2xp1A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.... .....70.........
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Query Sequence  THTNPTPPDISPNDVWYHGELNEHDANHLLQGTSPGAFLVRQTG. QTRFYLSILDQDGYP
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Template Sequence  KYTNPRFYKHP. . . . LFK. NFNVTESENYLR. SSTDDFLIRKGSRHGYCVLVIKFASDVF
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GGGGST....T.


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   783......790... ... ...800........ .810.........820.........830......
 
   80.........90.........100.........110.........120.........130.........
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Query Sequence  KHLPIRQLTPPHYFFEGKRFETLRDIVDAYQLAVIPVRKGGIMPINGEIQETKYLCVRRF
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Template Sequence  VHMKIEEHSE. HYTCSNKHFEDIDEVISVY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   837..840...... ...850.........860.....
 
   140.........150.........160.........170.........180.........190.........
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Query Sequence  EQREIDEMNSEIGDILSVCETDETGWMLGRNETSGSVGIILRSHLEPLITEVADLSDLPY
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VRPILRNLKSIKAHAK
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   866...870.........880.
 
   200....... ..210...... ...220.........230.........240.........250.....
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Query Sequence  FYDTVSTD. . . MVQYSPIGT. FLLRRSSKGTDTYALLVKTQFDLVEKFLIVGCPSRGFSL
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Template Sequence  YFNSPEDAEKLLSSFDGSKVVYAFYFSRKYPGKLTFAYNNG. SILEEYIGV. . . SDMLTY
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SSSTTSS.S...SSS
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   882.......890.........900.........910.........920.. .......930. ......
 
   256...260.........270..
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Query Sequence  AGRPFPTIGHVLTRYCD
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Template Sequence  NNSTFKDIDSFVAYRKR
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   938.940.........950....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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