Return to main results Retrieve Phyre Job Id

Job DescriptionQ95XA9
Confidence98.46%DateSun Jun 30 11:04:27 BST 2013
Rank196Aligned Residues111
% Identity8%Templatec3m7fB_
PDB info PDB header:signaling protein/ligaseChain: B: PDB Molecule:e3 ubiquitin-protein ligase nedd4; PDBTitle: crystal structure of the nedd4 c2/grb10 sh2 complex
Resolution2.00 Å
Model Dimensions (Å)X:25.546 Y:41.264 Z:51.233

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   512.......520.........530.........540...... ...550.........560......
Predicted Secondary structure 















.....











Query SS confidence 


































. . . . .



















Query Sequence  EPNSQVSILSIEIDKFRSELLKSDMFYSAQVSLNG. . . . . VKIGVSNAFAPAGNKGPNEM
Query Conservation    
 

  
 
 
 




  
    


 




.....


 

 
       
  

Alig confidence 


































.....













......
Template Conservation        
 
 
 
  
  
   
  


  
 
            
 
   
  ......
Template Sequence  LHNDDTRVVRVKVIAGIGLAILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLN. . . . . .
Template Known Secondary structure 


TT
S







TTT



SS
SS......
Template Predicted Secondary structure 


























......
Template SS confidence 



























































   113......120.........130.........140.........150.........160......
 
   567..570.........580.........590.........600.........610.........620.
Predicted Secondary structure 




































.....
Query SS confidence 






















































. . . . .
Query Sequence  PVVVIDSKFVIPCIPTCSTNIQLSMNSHSSIGKRGRPCGVTVTICLNENNESICQ. . . . .
Query Conservation   



 




 








 


 
 
 
 

     
 
 
  



  
  .....
Alig confidence  ..









.















....





















.....
Template Conservation  ..
 
 
 
 
 .
      
 
 
 
 
....   

   
 
  
           
 
Template Sequence  . . PKWNEEILFR. VLPQRHRILFEVFDEN. . . . DDFLGQVDVPLYPLPTEPYTFKDFVLH
Template Known Secondary structure  ..
.
TTT


....
S
S

B





B
Template Predicted Secondary structure  ..
.







....







Template SS confidence 



























































   170......... 180.........190..... ....200.........210.........220..
 
   622.......630.....
Predicted Secondary structure  ....





Query SS confidence  . . . .













Query Sequence  . . . . SQADSTGFVFRAQR
Query Conservation  ....     
    


 
Alig confidence  ....













Template Conservation           
 
 
 
 
Template Sequence  PRSHKSRVKGYLRLKMTY
Template Known Secondary structure 
SSTT



S
Template Predicted Secondary structure 






Template SS confidence 

















   233......240.........250
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D