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Job DescriptionQ95XA9
Confidence99.77%DateSun Jun 30 11:04:27 BST 2013
Rank30Aligned Residues159
% Identity19%Templatec3or8A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   36...40.........50.........60... ......70.........80.....
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Query Sequence  WYHGELNEHDANHLLQGTSPGAFLVRQT. . GQTRFYLSILDQDGYPKHLPIR. . . . . . . .
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Template Sequence  YYF. PFNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPL
Template Known Secondary structure  T.


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   8.10 .........20.........30.........40.........50.........60......
 
   86...90.........100.........110.........120.........130.........140.....
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Query Sequence  QLTPPHYFFEGKRFETLRDIVDAYQLAVIPVRKGGIMPINGEIQETKYLCVRRFEQREID
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Template Sequence  ALGK. VLVVEGQRYHDLDQII. VEYLQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S

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   67..70 .........80...... ...90.
 
   146...150.........160.........170.........180.........190.........200.....
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Query Sequence  EMNSEIGDILSVCETDETGWMLGRNETSGSVGIILRSHLEPLITEVADLSDLPYFYDTVS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NKIRLLNELTSNEKFKAG. T
Template Known Secondary structure  ........................................TSTT
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   92.......100......... 110
 
   206. ..210 .........220 .........230......... 240.........250.....
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Query Sequence  TD. . . . . MVQ. YSPIGTFLLR. . . RSSKGTDTYALLVKTQFDL. VEKFLIVGCPSRGFSL
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Template Sequence  KKEVVKFIEDYSKVNPKKSVYYFSLNYENPGWFYLIFKLNAESKLYIWNVKLTHT. GFFL
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   111........120.........130.........140.........150.........160..... ....
 
   256...260.........270..
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Query Sequence  AGRPFPTIGHVLTRYCD
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Template Sequence  VNYNYPTVIQLCNGFKT
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   170.........180......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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