Return to main results Retrieve Phyre Job Id

Job DescriptionQ95XA9
Confidence97.30%DateSun Jun 30 11:04:27 BST 2013
Rank399Aligned Residues125
% Identity9%Templatec3nsjA_
PDB info PDB header:immune systemChain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   512.......520.........530...... ...540.........550.........560.........
Predicted Secondary structure 











..


















Query SS confidence 
























. .
































Query Sequence  EPNSQVSILSIEIDKFRSELLKSDM. . FYSAQVSLNGVKIGVSNAFAPAGNKGPNEMPVV
Query Conservation    
 

  
 
 
 




  
   .. 


 







 

 
       
  

 

Alig confidence 
























..











.










........
Template Conservation      
   
 
 
  
  
  
     
 

 
      .  
       
........
Template Sequence  PRQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQE. FRTGVVWNNNN. . . . . . . . P
Template Known Secondary structure  BSSTTS


SS
S


TT.


B
S
SS........
Template Predicted Secondary structure 




















.



........
Template SS confidence 



























































   408.410.........420.........430.........440...... ...450....... .
 
   570.........580.... .....590.........600.........610.........620........
Predicted Secondary structure 









.





























Query SS confidence 














.











































Query Sequence  VIDSKFVIPCIPTCS. TNIQLSMNSHSSIGKRGRPCGVTVTICLNENNESICQSQADSTG
Query Conservation 

 




 





.


 


 
 
 
 

     
 
 
  



  
       
 
Alig confidence 














.


























...













Template Conservation   

    
    
     
   
 
 
    

 

     
 ...            
 
Template Sequence  RWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH. . . SGFHEVTCELNHGR
Template Known Secondary structure  B



TTT




SSS




...S
SSS
Template Predicted Secondary structure 













...






Template SS confidence 



























































   459460.........470.........480.........490.........500. ........510.....
 
   629630.........640.... ....
Predicted Secondary structure 






...
Query SS confidence 















. . .



Query Sequence  FVFRAQRNRCPVLPLD. . . RYKP
Query Conservation     


     


 
...



Alig confidence 















...



Template Conservation 
           
 
       
Template Sequence  VKFSYHAKCLPHLTGGTCLEYAP
Template Known Secondary structure 
TTSTTS


Template Predicted Secondary structure 









Template SS confidence 






















   516...520.........530........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D